Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq864 123 3e-23 seq9 123 3e-23 seq15 100 3e-16 seq8 87.8 2e-12 seq486 86.0 7e-12 >seq864 Length=2386779 Score = 123 bits (136), Expect = 3e-23 Identities = 230/335 (69%), Gaps = 6/335 (2%) Strand=Plus/Plus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9284 ||||| || || | | || ||||| || | || | ||||| || | |||||| Sbjct 704321 TCAAGAATRTCTGCCCTGTTAGTCGCTGCAACCACRATRATACCAGTGTTGCCYTCAAAA 704380 Query 9285 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9344 |||||||| ||||||||||| || |||| |||||||||| |||||| ||| || | | Sbjct 704381 CCATCCATTTCTGTCAAAAGCTGATTAAGGGTTTGTTCCCTTTCATCGTTCCCT--CCTC 704438 Query 9345 CCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATG 9402 | | |||| | | |||| ||| || || ||||| ||||||| || ||||| || | Sbjct 704439 CAATTCCAGTTCCTCTTTGCCGTCCAACAGCGTCAATTTCATCAACAAATACAATGCAAG 704498 Query 9403 GTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAA 9462 || ||| || ||| | | ||| ||||| ||||| | || || |||||||||| Sbjct 704499 GTGCATTCTCCTTGGCCTTCTTAAAAAGATCACGAACTCGGGAAGCACCAACACCAACAA 704558 Query 9463 ACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCA 9521 |||| || ||||| | | | | | || | || || || ||| | |||||| ||| Sbjct 704559 ACATTTCAACAAATTCAGAACCTG-AGATGGAGAAAAATGGAACACCCGCTTCACCAGCA 704617 Query 9522 ATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 || || || || |||||||| || || ||||| Sbjct 704618 ATTGCCTTTGCTAGCAGAGTCTTTCCGGTTCCTGG 704652 >seq9 Length=33717675 Score = 123 bits (136), Expect = 3e-23 Identities = 227/333 (68%), Gaps = 2/333 (1%) Strand=Plus/Plus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9284 ||||| ||||| | | || ||||| || | || | ||||| || | |||||| Sbjct 26639021 TCAAGAATATCTGCCCTGTTAGTCGCTGCAACCACRATRATACCAGTGTTGCCYTCAAAA 26639080 Query 9285 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9344 |||||||| ||||||||||| || |||| |||||||||| |||||| ||| || | Sbjct 26639081 CCATCCATTTCTGTCAAAAGCTGATTAAGGGTTTGTTCCCTTTCATCGTTCCCTCCWCCA 26639140 Query 9345 CCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGT 9404 |||| | | |||| ||| || || ||||| ||||||| || ||||| || ||| Sbjct 26639141 ATTCCAGTTCCTCTTTGCCGTCCAACAGCGTCAATTTCATCAACAAATACAATGCAAGGT 26639200 Query 9405 TGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAAC 9464 ||| || ||| | | ||| ||||| ||||| | || || |||||||||||| Sbjct 26639201 GCATTCTCCTTGGCCTTCTTAAAAAGATCACGAACTCGGGAAGCACCAACACCAACAAAC 26639260 Query 9465 ATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAAT 9523 || || ||||| | | | | | || | || || || ||| | |||||| ||||| Sbjct 26639261 ATTTCAACAAAYTCAGAACCTG-AGATGGAGAAAAATGGAACACCMGCTTCACCAGCAAT 26639319 Query 9524 GGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 || || || |||||||| || || || || Sbjct 26639320 TGCCTTTGCTAGCAGAGTCTTTCCGGTTCCYGG 26639352 >seq15 Length=47181002 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 107167 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 107226 ||| || ||||| || |||| |||||||||||| || | || ||| ||||| | || Sbjct 34781097 CTGAGGCCTTGGAGTTCCAGAATTGAAGAGGGTGGGAGAAGCATGAGTGAACCACCGCTG 34781156 Query 107227 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGC 107286 |||||| || ||||||| | |||||||| || || ||| ||| || || | | Sbjct 34781157 AGACATCAGGTGATATGTCTTGATAACAGAATCGATATCATCCTTGTGAATCCCAACAGA 34781216 Query 107287 CACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGAT 107345 || | ||| | ||||| ||| ||| |||||| | |||| | || || || | || | Sbjct 34781217 AACCCTCATTAGCATGTGTTGAGGTCTTTCCACAACTTTGCC-TTGAACCTTTAAGAGGT 34781275 Query 107346 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 107394 | | ||||||| || |||| ||||||||| || | ||| ||||||| Sbjct 34781276 AAGACCTCTCAAGAGTCTTGAAGCCAAAGTAATCATAGTCAAAGTCCCG 34781324 >seq8 Length=29603939 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/198 (71%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| ||||||||||| |||| || || ||||||||||| |||| ||||||||| | | Sbjct 359224 AAACCCATCCATCTCCGTCAGCAGCTGATTAATAGTTTGCTCCCTCTCATCATTCCC--G 359167 Query 9341 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 | ||| || || | | ||| | ||||| ||||| |||||||||||||| ||||| Sbjct 359166 CCGCCCATYCCCGCGCCTCTCTGCCTCCCCACCGCATCTATCTCATCAATGAACACAATG 359107 Query 9399 CATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACC 9457 || || | ||| | ||| | || || | || || || || || ||||| || Sbjct 359106 CACGG-CGCTTTCGACTTGGCCTTCTCGAACAAGTCCCGYACTCTCGACGCCCCCACTCC 359048 Query 9458 AACAAACATCTCCACAAA 9475 ||||||| |||||| || Sbjct 359047 CACAAACAACTCCACGAA 359030 >seq486 Length=229640 Score = 86.0 bits (94), Expect = 7e-12 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227 || || ||||| || |||| |||||||||||| || | || ||| ||||| | ||| Sbjct 170241 TGAGGCCTTGGGGTTCCAGAATTGAAGAGGGTGGGAGAAGCATGAGTGAACCACCGTTGA 170182 Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287 |||||| | |||||| | ||||||||||| || | | ||| || || | | Sbjct 170181 GACATCAAATGATATGTCCTGATAACAGAATCAATATCGTYCTTGTGAATCCCAACAGAA 170122 Query 107288 ACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGATA 107346 || | ||| | ||||| ||| || |||| | | |||| | || || || | || || Sbjct 170121 ACCCTCATTAGCATGTGTTGAGGCCTTTCTACAACTTTGCC-TTGAACCTTTAACAGGTA 170063 Query 107347 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 107394 | ||||||| || |||| ||||||||| || | ||| ||||||| Sbjct 170062 AGACCTCTCAAGAGTCTTGAAGCCAAAGTAATCATAGTCAAAGTCCCG 170015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589971574175240