Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq9 295 8e-75 seq672 262 5e-65 seq1241 158 1e-33 seq13 152 6e-32 seq11 125 9e-24 seq629 102 1e-16 seq8 102 1e-16 seq1251 91.5 2e-13 seq1081 91.5 2e-13 seq98 91.5 2e-13 >seq9 Length=33717675 Score = 295 bits (326), Expect = 8e-75 Identities = 452/638 (71%), Gaps = 6/638 (1%) Strand=Plus/Plus Query 181553 TGGTACACCCACGGATTGGCGTCTTCCTACCTTGAGGGTGCTAATTTCCTTACAGCGGCT 181612 ||||| ||||| |||| || |||||| | || || |||| ||| | | | || Sbjct 26714189 TGGTATACCCATAGATTAGCAAGTTCCTATTTGGAAGGCTCTAACTTCTTAAGTGATGCA 26714248 Query 181613 GTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCT-ACTTTGGGGTCCTGAAGC 181671 || || || || ||| | | | | || | |||| || | ||| |||||||||||||| Sbjct 26714249 GTTTCCACTCCGGCTAATAGTTTAGCGCACT-TCTTGTTGTTACTATGGGGTCCTGAAGC 26714307 Query 181672 TCAGGGCGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCA 181731 || || ||||| || ||| ||| | || | || | | ||||||| || || || Sbjct 26714308 ACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCAGTCTATAGACTTTTGTTGCACTACA 26714367 Query 181732 CGGAGCCTTCGCTCTTATCGGTTTTATGCTCAGGCAATTTGAACTTGCTCG-TCTAATCG 181790 || || |||| || || ||||| ||| | | |||||||| |||||||| ||| | | Sbjct 26714368 TGGCGCTTTCGAACTAATAGGTTT-ATGTTACGTCAATTTGAGCTTGCTCGATCTGTT-G 26714425 Query 181791 GAATCCGACCCTACAATGCGATTGCTTTTTCCGGTCCTATTGCTGTATTCGTCTCTGTAT 181850 | | |||| | ||||| ||||| || |||||||| |||||||| || || ||||||| Sbjct 26714426 AATTGTGACCTTGTAATGCAATTGCATTCTCCGGTCCAATTGCTGTTTT-GTTTCTGTAT 26714484 Query 181851 TTCTCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTTTCGGTGTCGCGG 181910 | || || ||||| | || || || |||||||||||||| || ||||| ||||| || | Sbjct 26714485 TCCTAATTTATCCGTTAGGTCAGTCTAGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCAG 26714544 Query 181911 CGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCC 181970 | || || | ||| | ||||| | ||||| |||||||||||||| || || || || | Sbjct 26714545 CTATATTTTGATTCATCCTCTTTTTYCAGGGGTTTCATAATTGGACACTAAACCCATTTC 26714604 Query 181971 ATATGATGGGTGTTGCTGGTATCCTGGGTGGCGCATTACTCTCTGCAATTCACGGTGTGA 182030 |||||||||| |||| ||| | |||| | || || | | || |||||||||| | Sbjct 26714605 ATATGATGGGAGTTGTTGGGGTGTTGGGCGCTGCTTTGTTATGCGCTATTCACGGTGCTA 26714664 Query 182031 CCGTGGAGAATACTCTGTATCAAGACGGTGACCAAGCAAATACTTTCAAAGCATTCGATT 182090 | | | |||||| | | | ||| ||||| |||||||| ||| | ||| | Sbjct 26714665 TCATAAAAAATACTTTATTTGGAGATGGTGATGGTGCAAATACATTCCGTGGTTTCAACC 26714724 Query 182091 CAACTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCTGGTCTCAGATCT 182150 ||||||||| |||||||| ||||||||||| || | |||| ||| ||||| || |||| Sbjct 26714725 CAACTCAAGTTGAAGAAACTTATTCAATGGTCACCACTAACCRCTTTTGGTCCCAAATCT 26714784 Query 182151 TCGGTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTC 182188 | | |||| ||| |||||| | ||||| |||||| Sbjct 26714785 TTAGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTC 26714822 >seq672 Length=1945142 Score = 262 bits (290), Expect = 5e-65 Identities = 518/767 (68%), Gaps = 33/767 (4%) Strand=Plus/Minus Query 181424 TTTGACATCCTTGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGA 181483 ||||| || | ||||||||| | | | ||||||| || ||||| || |||||| | Sbjct 1649958 TTTGATATTATGGATGACTGGTTACGAAGGAACCGCTTCGTTTTTGTAGGTTGGTCTAGC 1649899 Query 181484 CTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGGGGCTGGCTCACTGGCACTACTTTT 181543 | | | || ||||| ||| ||| | || | ||||| ||| | || | ||| Sbjct 1649898 CAATTACTCTTTCCTTGTGCCTATTTYGCTTTAGGGGGTTGGTT----GGAA----TTTA 1649847 Query 181544 GTTACGTCGTGGTACACCCACGGATTGGCGTCTTCCTACCTTGAGGGTGCTAATTTCCTT 181603 || ||||| ||||| |||| || |||||| | || || ||| ||| | Sbjct 1649846 ATT------TGGTATACCCATAGATTAGCAAGTTCCTATTTGGAAGGCTTTAACTTCTTA 1649793 Query 181604 ACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCT-ACTTTGGGG 181662 | | || || || || || ||| | | | | || | |||| || | ||| ||||| Sbjct 1649792 AGTGATGCAGTTTCCACTCCGGCTAATAGTTTAGCGCACT-TCTTGTTGTTACTATGGGG 1649734 Query 181663 TCCTGAAGCTCAGGGCGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGGCTTTTGT 181722 ||||||||| || || ||||| || ||| ||| | || | || | | ||||||| Sbjct 1649733 TCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCAGTCTATAGACTTTTGT 1649674 Query 181723 GGCGCTCCACGGAGCCTTCGCTCTTATCGGTTTTATGCTCAGGCAATTTGAACTTGCTCG 181782 || || || || || |||| || || ||||| ||| | | |||||||| |||||||| Sbjct 1649673 TGCACTACATGGCGCTTTCGGACTAATAGGTTT-ATGTTACGTCAATTTGAGCTTGCTCG 1649615 Query 181783 -TCTAATCGGAATCCGACCCTACAATGCGATTGCTTTTTCCGGTCCTATTGCTGTATTCG 181841 ||| | | | |||| | ||||| ||||| || |||||||| |||||||| || | Sbjct 1649614 ATCTGTTSA-ATTGTGACCTTRTAATGCAATTGCATTCTCCGGTCCAATTGCTGTTTTTG 1649556 Query 181842 TCTCTGTATTTCTCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTTTCG 181901 | |||||||| || || |||| | || || || ||||||||||||| || ||||| | Sbjct 1649555 TTTCTGTATTCCTAATTTATCYRTTAGGTCAGTCTRGTTGGTTCTTTGCACCTAGTTTTG 1649496 Query 181902 GTGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCA 181961 |||| || || || || | ||| | ||||| | ||||| |||||||||||||| || | Sbjct 1649495 GTGTAGCAGCTATATTTTGATTCATCCTCTTTTTYCAGGGGTTTCATAATTGGACACTAA 1649436 Query 181962 ATCCCTTCCATATGATGGGTGTTGCTGGTATCCTGGGTGGCGCATTACTCTCTGCAATTC 182021 | || || ||||||||||| |||| ||| | |||| | || | | | || |||| Sbjct 1649435 ACCCATTTCATATGATGGGAGTTGTTGGGGTGTTGGGCGCTGCTYTGTTATGCGCTATTC 1649376 Query 182022 ACGGTGTGACCGTGGAGAATACTCTGTATCAAGACGGTGACCAAGCAAATACTTTCAAAG 182081 |||||| | | | | |||||| | | | ||| || || || | | | || Sbjct 1649375 ACGGTGCTATCATARAAAATACTTTATTTGGAGATGGGGA------AATTCCGGTTTAAC 1649322 Query 182082 CATTCGATTCAACTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCTGGT 182141 | ||||||||| |||||||| ||||||||||| || | |||| ||| |||| Sbjct 1649321 C--------CAACTCAAGTTGAAGAAACTTATTCAATGGTCACCACTAACCRCTTTTGGT 1649270 Query 182142 CTCAGATCTTCGGTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTC 182188 | || ||||| | |||| ||| |||||| | ||||| |||||| Sbjct 1649269 CCCAAATCTTTAGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTC 1649223 >seq1241 Length=4265459 Score = 158 bits (174), Expect = 1e-33 Identities = 249/354 (70%), Gaps = 2/354 (1%) Strand=Plus/Minus Query 179790 GGTTGGTTCGGCGTTCTGATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGT 179848 || ||||| || ||| ||||||| | ||| | ||| | |||||| |||| || || | Sbjct 4250727 GGATGGTTTGGTGTTTTGATGATCCTTACTTTATTGACCGCAACT-TCTGTATTTATTAT 4250669 Query 179849 CGCCTTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTC 179908 || ||||| ||||| || || | || || ||||| || |||||||| || |||| || Sbjct 4250668 TGCTTTCATTGCTGCACCTCCAATAGATATTGATGGTATTCGTGAACCTGTTTCTGGATC 4250609 Query 179909 ACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGG 179968 | | ||||| | ||| || || | | |||| || ||||| |||| || || || Sbjct 4250608 TTTACTTTATGGAAGCAATATTATTTTTTGTGCCATTATTCCTACTTCTGCAGCTATAGG 4250549 Query 179969 TCTTCACTTCTATCCCATCTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGG 180028 | | ||||| || || || |||||||| | || |||| || ||| | || || ||||| Sbjct 4250548 TTTGCACTTTTACCCTATATGGGAAGCGACTTCTGTTGATGAATGGTTATACAATGGTGG 4250489 Query 180029 TCCTTTCCAACTTGTCGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGA 180088 ||||| | || | || | |||||| | |||| | | |||| |||||||||| Sbjct 4250488 TCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACGTGGGTCGTGA 4250429 Query 180089 GTGGGAACTTTCTTATCGCTTGGGTATGCGCCCCTGGATCTGCGTAGCATATTC 180142 |||||||||| || ||| ||||||| ||||| ||||| || |||||||| Sbjct 4250428 GTGGGAACTTAGTTTTCGTCTGGGTATACGCCCTTGGATTGTTGTTGCATATTC 4250375 >seq13 Length=34719086 Score = 152 bits (168), Expect = 6e-32 Identities = 249/359 (69%), Gaps = 2/359 (1%) Strand=Plus/Plus Query 179790 GGTTGGTTCGGCGTTCTGATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGT 179848 || ||||| || ||| ||||||| | ||| | ||| | |||||| |||| || || | Sbjct 21513248 GGATGGTTTGGTGTTTTGATGATCCTTACTTTATTGACCGCAACT-TCTGTATTTATTAT 21513306 Query 179849 CGCCTTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTC 179908 || ||||| |||| || || | || || ||||| || |||||||| || |||| || Sbjct 21513307 TGCTTTCATTRCTGCACCTCCAATAGATATTGATGGTATTCGTGAACCTGTTTCTGGATC 21513366 Query 179909 ACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGG 179968 | | ||||| | ||| || || | | |||| || ||||| |||| || || || Sbjct 21513367 TTTACTTTATGGAAGCAATATTATTTTTTGTGCCATTATTCCTACTTCTGCAGCTATAGG 21513426 Query 179969 TCTTCACTTCTATCCCATCTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGG 180028 | | ||||| || || || |||||||| | || |||| || ||| | || || ||||| Sbjct 21513427 TTTGCACTTTTACCCTATATGGGAAGCGACTTCTGTTGATGAATGGTTATACAATGGTGG 21513486 Query 180029 TCCTTTCCAACTTGTCGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGA 180088 ||||| | || | || | |||||| | |||| | | |||| |||||||||| Sbjct 21513487 TCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACGTGGGTCGTGA 21513546 Query 180089 GTGGGAACTTTCTTATCGCTTGGGTATGCGCCCCTGGATCTGCGTAGCATATTCTGCTC 180147 |||||||||| || | ||||||| ||||| ||||| || |||||||| ||| Sbjct 21513547 GTGGGAACTTAGTTTTYKTCTGGGTATACGCCCTTGGATTGTTGTTGCATATTCARCTC 21513605 >seq11 Length=35299535 Score = 125 bits (138), Expect = 9e-24 Identities = 206/297 (69%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 182140 GTCTCAGATCTTCGGTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTTATGCTCTT 182199 ||| || ||||| || |||| || |||||| ||||| |||||| ||||| | || Sbjct 68910 GTCCCACATCTTTGGGGTTGCTGTTTCCAATAAACATTGGTTACATTTCCTTATGTTATT 68851 Query 182200 TGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCT 182259 ||| | || | ||| | |||| ||| | | | | | ||||| || | ||||| Sbjct 68850 TGTACTAGTAACCGGTTTATGGATGAGTGCTCTTGAAGTAGTGGGTCTGGCCTTGAACCT 68791 Query 182260 TCGTGCTTATGACTTTGTATCCCAAGAAATCAGAGCATCAGAAGACCCAGAGTTCGAGAC 182319 |||| ||||| ||||| || || ||||| | | |||||| || || || ||||| Sbjct 68790 ACGTGTCTATGATTTTGTTTCTCAGAAAATCCATGTAGTAGAAGATCCTGAATTTGAGAC 68731 Query 182320 GTTCTACACAAAGAACATTCTCTTGAATGAAGGTCTGCGTGCATGGTTAGCACCAGTCGA 182379 ||||| || || || |||||||| ||||||||| | | ||| ||| | | | || Sbjct 68730 TTTCTAAACCAACAATATTCTCTTAAATGAAGGTATACATGCTTGGATGGTGGCTCAAGA 68671 Query 182380 TCAACCACATGAGAACTTTGTGTTCCCTGAGGAAGTATTACCCAGAGGTAACGCACT 182436 ||| || |||| ||| || | ||||||||||| || |||||| | || ||||| || Sbjct 68670 TCAGCCTTATGAAAACCTTATATTCCCTGAGGAGGTTTTACCCCGTGGAAACGCTCT 68614 >seq629 Length=2291386 Score = 102 bits (112), Expect = 1e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 180377 AACCACTGAAACTGAGTCCCAGAACTACGGTTACAAGTTTGGTCAAGAAGAAGAGACCTA 180436 |||||| |||| ||| | || |||||||||| ||||||||||| ||||| ||||| Sbjct 2030055 AACCACAGAAAATGAATATGCTAATTACGGTTACAGATTTGGTCAAGAGGAAGAAACCTA 2029996 Query 180437 CAACATCGTTGCTGCACATGGATACTTCGGTCGTCTGATCTTCCAGTATGCATCGTTCAA 180496 ||| ||||| || || ||||| || || || | |||||||||| ||||| || || Sbjct 2029995 CAATATCGTAGCGGCTCATGGTTATTTTGGCTGATTGATCTTCCAATATGCTAGTTTGAA 2029936 Query 180497 CAACTCCCGTTCACTTCACTTCTT 180520 |||||| | ||| | |||||||| Sbjct 2029935 CAACTCTCATTCTTTACACTTCTT 2029912 >seq8 Length=29603939 Score = 102 bits (112), Expect = 1e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 180377 AACCACTGAAACTGAGTCCCAGAACTACGGTTACAAGTTTGGTCAAGAAGAAGAGACCTA 180436 |||||| |||| ||| | || |||||||||| ||||||||||| ||||| ||||| Sbjct 4091896 AACCACAGAAAATGAATATGCTAATTACGGTTACAGATTTGGTCAAGAGGAAGAAACCTA 4091955 Query 180437 CAACATCGTTGCTGCACATGGATACTTCGGTCGTCTGATCTTCCAGTATGCATCGTTCAA 180496 ||| ||||| || || ||||| || || || | |||||||||| ||||| || || Sbjct 4091956 CAATATCGTAGCGGCTCATGGTTATTTTGGCTGATTGATCTTCCAATATGCTAGTTTGAA 4092015 Query 180497 CAACTCCCGTTCACTTCACTTCTT 180520 |||||| | ||| | |||||||| Sbjct 4092016 CAACTCTCATTCTTTACACTTCTT 4092039 >seq1251 Length=396947 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| | |||||||||||||||||| Sbjct 247075 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCAAAT 247016 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 247015 CCTACTTGGGGAG 247003 >seq1081 Length=585217 Score = 91.5 bits (100), Expect = 2e-13 Identities = 160/231 (69%), Gaps = 11/231 (5%) Strand=Plus/Minus Query 181874 TCCAGTTGGTTCTTTGCGCCGAGTTTCGGTGTCGCGGCGATTTTCCGCTTCCTTCTCTTC 181933 || |||||||||||||||| | ||| |||| || || || || | ||| | ||||| Sbjct 578917 TCTAGTTGGTTCTTTGCGCTCAATTTTCGTGTGGCAGCTATATTTTGATTCATCCTCTTT 578858 Query 181934 CTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATATGATGGGTGTTGCTGGTATC 181993 ||||||| ||||||||||| || | || || ||||||||| | |||| ||| Sbjct 578857 TTCCAGGGGTTTCATAATTGAACATTGAACTYATTTCATATGATGAGAGTTGTTGG---- 578802 Query 181994 CTGGGTGGCGCATTACTC---TCTGCA--ATTCACGGTGTGACCGTGGAGAATACTCTGT 182048 | || | ||| | ||| | |||| ||||| ||||| || || || ||||| | | Sbjct 578801 -AGTGTTGGGCACTGCTCTRTTATGCACTATTCATGGTGTTACTGTAGAAGATACTTTAT 578743 Query 182049 ATCAAGACGGTGACCAAGCAAATACTTTCAAAGCATTCGATTCAACTCAAG 182099 | |||| ||||| |||||||| || | || || | ||||||||| Sbjct 578742 TTGAAGATGGTGATGGTGCAAATACATTACATGCCTT-AACCCAACTCAAG 578693 >seq98 Length=658186 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| | |||||||||||||| ||| Sbjct 224072 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCGAAT 224013 Query 141314 CCTACCTGGGGAG 141326 ||||||||||||| Sbjct 224012 CCTACCTGGGGAG 224000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610387254920040