Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq672 156 5e-33 seq1241 143 3e-29 seq9 143 3e-29 seq13 138 1e-27 seq15 118 1e-21 seq8 118 1e-21 seq11 100 3e-16 >seq672 Length=1945142 Score = 156 bits (172), Expect = 5e-33 Identities = 401/610 (66%), Gaps = 25/610 (4%) Strand=Plus/Minus Query 170529 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTCTGGT 170588 |||||| || | || ||||||||| || | || || || || |||| |||||| | Sbjct 1649958 TTTGATATTATGGATGACTGGTTACGAAGGAACCGCTTCGTTTTTGTAGGTTGGTCTAGC 1649899 Query 170589 CTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTACCTTC 170648 | ||||| | |||||||| || | | | || |||||||| ||| | Sbjct 1649898 CAATTACTCTTTCCTTGTGCCTATTTYGCTTTAGGGGGTTGGTT-----GGAAT------ 1649850 Query 170649 GTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAACTTCCTA 170708 ||| | |||||||| ||| | | || || ||| | || || | ||||||| || Sbjct 1649849 -TTAATT--TGGTATACCCATAGATTAGCAAGTTCCTATTTGGAAGGCTTTAACTTCTTA 1649793 Query 170709 ACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGTCATAGT-CTTCT----GTTCCTTT 170763 | | ||||||||||| || ||| | || | | | | ||||| ||| || | Sbjct 1649792 AGTGATGCAGTTTCCACTCC-GGCTA----ATAGTTTAGCGCACTTCTTGTTGTTACTAT 1649738 Query 170764 GGGGACCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATGGAACT 170823 |||| |||||||||||||| ||| |||||||| ||| | || || ||| || | Sbjct 1649737 GGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCAGTCTATAGACTT 1649678 Query 170824 TTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCAGACAATTTGAGATCG 170883 |||| ||| ||||||| | || ||||| |||||||| ||| | | ||||||||| | | Sbjct 1649677 TTGTTGCACTACATGGCGCTTTCGGACTAATAGGTTT-ATGTTACGTCAATTTGAGCTTG 1649619 Query 170884 CAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCT 170943 | || ||| | |||||| || ||| | |||||||| | | || || || | Sbjct 1649618 CTCGATCTGTTSAATTGTGACCTTRTAATGCAATTGCATTCTCCGGTCCAATTGCTGTTT 1649559 Query 170944 TCACTAGCATCTTTCTGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCACCATCAT 171003 | | | || || || |||| |||||||| |||||||||| ||||| | Sbjct 1649558 TTGTTTCTGTATTCCTAATTTATCYRTTAGGTCAGTCTRGTTGGTTCTTTGCACCTAGTT 1649499 Query 171004 TCGGTGTCGCAGCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACAT 171063 | ||||| ||||| || ||| | | ||| | || | || || || || || ||| Sbjct 1649498 TTGGTGTAGCAGCTATATTTTGATTCATCCTCTTTTTYCAGGGGTTTCATAATTGGACAC 1649439 Query 171064 TGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTGCCA 171123 | || |||||||| |||||||| |||| || | | || | || | ||||| || | Sbjct 1649438 TAAACCCATTTCATATGATGGGAGTTGTTGGGGTGTTGGGCGCTGCTYTGTTATGCGCTA 1649379 Query 171124 TTCATGGTGC 171133 |||| ||||| Sbjct 1649378 TTCACGGTGC 1649369 >seq1241 Length=4265459 Score = 143 bits (158), Expect = 3e-29 Identities = 249/357 (70%), Gaps = 4/357 (1%) Strand=Plus/Minus Query 169442 TTGGTTGGTTTGGTGTTCTAATGATTCCATGCTT-ACTCACAGCAGCAGCATGT-TTCAT 169499 |||| |||||||||||| | ||||| || | ||| | | || ||| | | ||| || || Sbjct 4250729 TTGGATGGTTTGGTGTTTTGATGAT-CCTTACTTTATTGACCGCAACTTC-TGTATTTAT 4250672 Query 169500 CGTTGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGG 169559 |||| |||||||| |||||||| | ||||| || || || | ||||| || | || Sbjct 4250671 TATTGCTTTCATTGCTGCACCTCCAATAGATATTGATGGTATTCGTGAACCTGTTTCTGG 4250612 Query 169560 TTCTTTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTAT 169619 ||||| | ||||| | ||| || || | | |||| || |||| | || ||||| Sbjct 4250611 ATCTTTACTTTATGGAAGCAATATTATTTTTTGTGCCATTATTCCTACTTCTGCAGCTAT 4250552 Query 169620 CGGACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGG 169679 || | ||||| ||||| || |||||||| | |||||||||||||||| || ||||| Sbjct 4250551 AGGTTTGCACTTTTACCCTATATGGGAAGCGACTTCTGTTGATGAATGGTTATACAATGG 4250492 Query 169680 TGGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAG 169739 |||||||||| || | | | | |||||| | ||||| | | ||| |||| | Sbjct 4250491 TGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACGTGGGTCG 4250432 Query 169740 ACAGTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTC 169796 |||||||||| | | | || || || |||||||| ||||||||| || Sbjct 4250431 TGAGTGGGAACTTAGTTTTCGTCTGGGTATACGCCCTTGGATTGTTGTTGCATATTC 4250375 >seq9 Length=33717675 Score = 143 bits (158), Expect = 3e-29 Identities = 324/481 (67%), Gaps = 12/481 (2%) Strand=Plus/Plus Query 170658 TGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAACTTCCTAACAGCAGCA 170717 |||||||| ||| | | || || ||| | || || | ||||||| ||| | ||| Sbjct 26714189 TGGTATACCCATAGATTAGCAAGTTCCTATTTGGAAGGCTCTAACTTCTTAAGTGATGCA 26714248 Query 170718 GTTTCCACACCTGGCGACGCAATGGGTCATAGT-CTTCT----GTTCCTTTGGGGACCTG 170772 |||||||| || ||| | || | | | | ||||| ||| || ||||| |||| Sbjct 26714249 GTTTCCACTCC-GGCTA----ATAGTTTAGCGCACTTCTTGTTGTTACTATGGGGTCCTG 26714303 Query 170773 AAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATGGAACTTTGTAGCAT 170832 |||||||||| ||| |||||||| ||| | || || ||| || ||||| ||| Sbjct 26714304 AAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCAGTCTATAGACTTTTGTTGCAC 26714363 Query 170833 TACATGGAGTCTTTGGACTCATAGGTTTCATGCTCAGACAATTTGAGATCGCAGGACTTG 170892 ||||||| | || | ||| |||||||| ||| | | ||||||||| | || || || Sbjct 26714364 TACATGGCGCTTTCGAACTAATAGGTTT-ATGTTACGTCAATTTGAGCTTGCTCGATCTG 26714422 Query 170893 TAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTTCACTAGCA 170952 | | | |||||| || ||| | |||||||| | | || || || || | Sbjct 26714423 TTGAATTGTGACCTTGTAATGCAATTGCATTCTCCGGTCCAATTGCTGTTTTGTTTCTG- 26714481 Query 170953 TCTTTCTGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCACCATCATTCGGTGTCG 171012 | || || || ||||| |||||||| ||||||||||| ||||| || ||||| | Sbjct 26714482 TATTCCTAATTTATCCGTTAGGTCAGTCTAGTTGGTTCTTTGCACCTAGTTTTGGTGTAG 26714541 Query 171013 CAGCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAATCCAT 171072 |||| || ||| | | ||| | || | || || || || || ||| | || |||| Sbjct 26714542 CAGCTATATTTTGATTCATCCTCTTTTTYCAGGGGTTTCATAATTGGACACTAAACCCAT 26714601 Query 171073 TTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTGCCATTCATGGTG 171132 |||| |||||||| |||| || | | || | || || ||||| || ||||| |||| Sbjct 26714602 TTCATATGATGGGAGTTGTTGGGGTGTTGGGCGCTGCTTTGTTATGCGCTATTCACGGTG 26714661 Query 171133 C 171133 | Sbjct 26714662 C 26714662 >seq13 Length=34719086 Score = 138 bits (152), Expect = 1e-27 Identities = 247/357 (69%), Gaps = 4/357 (1%) Strand=Plus/Plus Query 169442 TTGGTTGGTTTGGTGTTCTAATGATTCCATGCTT-ACTCACAGCAGCAGCATGT-TTCAT 169499 |||| |||||||||||| | ||||| || | ||| | | || ||| | | ||| || || Sbjct 21513246 TTGGATGGTTTGGTGTTTTGATGAT-CCTTACTTTATTGACCGCAACTTC-TGTATTTAT 21513303 Query 169500 CGTTGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGG 169559 |||| |||||| | |||||||| | ||||| || || || | ||||| || | || Sbjct 21513304 TATTGCTTTCATTRCTGCACCTCCAATAGATATTGATGGTATTCGTGAACCTGTTTCTGG 21513363 Query 169560 TTCTTTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTAT 169619 ||||| | ||||| | ||| || || | | |||| || |||| | || ||||| Sbjct 21513364 ATCTTTACTTTATGGAAGCAATATTATTTTTTGTGCCATTATTCCTACTTCTGCAGCTAT 21513423 Query 169620 CGGACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGG 169679 || | ||||| ||||| || |||||||| | |||||||||||||||| || ||||| Sbjct 21513424 AGGTTTGCACTTTTACCCTATATGGGAAGCGACTTCTGTTGATGAATGGTTATACAATGG 21513483 Query 169680 TGGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAG 169739 |||||||||| || | | | | |||||| | ||||| | | ||| |||| | Sbjct 21513484 TGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACGTGGGTCG 21513543 Query 169740 ACAGTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTC 169796 |||||||||| | | || || || |||||||| ||||||||| || Sbjct 21513544 TGAGTGGGAACTTAGTTTTYKTCTGGGTATACGCCCTTGGATTGTTGTTGCATATTC 21513600 >seq15 Length=47181002 Score = 118 bits (130), Expect = 1e-21 Identities = 164/228 (72%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 153747 GATATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCAT 153806 ||||||| ||| ||| | ||| ||||||||| |||| ||||| ||||||||||||||| Sbjct 849971 GATATTGTTGTTGGTTCTGCGCAGAGGTTTGGTGTTCCGATGGGGTATGGAGGTCCTCAT 849912 Query 153807 GCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG-- 153864 || || ||| | || || || | |||| ||||| | ||| || || |||||| | | Sbjct 849911 GCGGCTTTCCTCGCCACCTCACAAGAGTACAAGAGGATGATGCCAGGGAGAATTATCGGT 849852 Query 153865 GTCAGTCAGTAGATAGTGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGC 153924 || ||| || || ||| || || | | | || | ||||| || |||| Sbjct 849851 GTTAGT--GTTGACTCCTCAGGGAAGCCTGCGTTGCGTATGGCGATGCAGACAAGGGAGC 849794 Query 153925 AGCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCTCAGG 153972 |||||||| |||| ||||| || ||||| ||||| ||||| ||||||| Sbjct 849793 AGCATATCCGGAGGGACAAGGCTACCAGCAACATTTGCACTGCTCAGG 849746 >seq8 Length=29603939 Score = 118 bits (130), Expect = 1e-21 Identities = 168/233 (72%), Gaps = 5/233 (2%) Strand=Plus/Plus Query 153747 GATATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCAT 153806 ||||||| ||| ||| | ||| ||||||||| |||| ||||| ||||||||||||||| Sbjct 7970414 GATATTGTTGTTGGTTCTGCGCAGAGGTTTGGTGTTCCGATGGGGTATGGAGGTCCTCAT 7970473 Query 153807 GCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG-- 153864 || || ||| | || || || | |||| ||||| | ||| || || |||||| | | Sbjct 7970474 GCGGCTTTCCTGGCCACCTCACAAGAGTACAAGAGGATGATGCCGGGGAGAATTATTGGT 7970533 Query 153865 GTCAGTCAGTAGATAGTGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGC 153924 || ||| || ||| || || || | | || | ||||| || |||| Sbjct 7970534 GTTAGT--GTTGATTCCTCGGGGAAGCCTGCGCTGCGTATGGCTATGCAGACAAGGGAGC 7970591 Query 153925 AGCATATCAGGA-GAGACAAAGCAACCAGTAACATCTGCACAGCTCAGGCACT 153976 |||||||||||| | |||||||| ||||| ||||| ||||| ||||||| ||| Sbjct 7970592 AGCATATCAGGAGGGGACAAAGCTACCAGCAACATTTGCACTGCTCAGGTACT 7970644 >seq11 Length=35299535 Score = 100 bits (110), Expect = 3e-16 Identities = 205/303 (68%), Gaps = 4/303 (1%) Strand=Plus/Minus Query 171266 GTCACAGATATTTGGTATTGCTTTCTCTAACAAAAGATTTTTACACTTCCTTATGTTGTT 171325 ||| || || ||||| ||||| | || || ||| | ||||| ||||||||||| || Sbjct 68910 GTCCCACATCTTTGGGGTTGCTGTTTCCAATAAACATTGGTTACATTTCCTTATGTTATT 68851 Query 171326 CGTTCCTGTCATGGGTATGTGGACA--TCATCTATAGGTATCGTAGGTCTAGCACTTAAC 171383 || | || | ||| | |||| | ||| | ||| || ||||| || | ||| Sbjct 68850 TGTACTAGTAACCGGTTTATGGATGAGTGCTCTTGAAGTA--GTGGGTCTGGCCTTGAAC 68793 Query 171384 CTCAGAGCATACGATTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAGAGTTCGAG 171443 || | | || |||||||| ||||| | || | || |||||| || || || ||| Sbjct 68792 CTACGTGTCTATGATTTTGTTTCTCAGAAAATCCATGTAGTAGAAGATCCTGAATTTGAG 68733 Query 171444 ACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAGCATGGATGTCATCAGTT 171503 |||||||| || || ||||| || | ||||||||||| || |||||| | Sbjct 68732 ACTTTCTAAACCAACAATATTCTCTTAAATGAAGGTATACATGCTTGGATGGTGGCTCAA 68673 Query 171504 GACCAACCACATGAGAACTTCGTATTCCCAGAAGAAGTGTTACCAAGAGGTAACGCACTT 171563 || || || |||| ||| | ||||||| || || || ||||| | || ||||| ||| Sbjct 68672 GATCAGCCTTATGAAAACCTTATATTCCCTGAGGAGGTTTTACCCCGTGGAAACGCTCTT 68613 Query 171564 TAA 171566 ||| Sbjct 68612 TAA 68610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579203742559840