Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq9 250 3e-61 seq672 226 3e-54 seq629 113 5e-20 seq8 113 5e-20 seq12 107 2e-18 seq11 107 2e-18 >seq9 Length=33717675 Score = 250 bits (276), Expect = 3e-61 Identities = 440/638 (69%), Gaps = 8/638 (1%) Strand=Plus/Plus Query 169436 TGGTACACCCACGGACTCGC---TTCCAGTTACTTAGAAGGCGCTAACTTCCTCACTGCT 169492 ||||| ||||| || | || |||| || || |||||| |||||||| | | || | Sbjct 26714189 TGGTATACCCATAGATTAGCAAGTTCC---TATTTGGAAGGCTCTAACTTCTTAAGTGAT 26714245 Query 169493 GCTGTCAGTACACCTGCTGACGCTATGGGACACTCACTGCTCTTGCTATGGGGTCCAGAA 169552 || || || || ||| | | | | |||| || | || ||||||||||| ||| Sbjct 26714246 GCAGTTTCCACTCCGGCTAATAGTTTAGCGCACTTCTTGTTGTTACTATGGGGTCCTGAA 26714305 Query 169553 GCACAAGGCGATTTCGTTCGCTGGTGTCAATTGGGTGGTCTCTGGAACTTTGTAGCACTT 169612 |||||||| ||||| ||| ||||||||||| || |||| | || ||||| ||||| Sbjct 26714306 GCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCAGTCTATAGACTTTTGTTGCACTA 26714365 Query 169613 CATGGTGCATTTGCATTGATTGGTTTCATGCTTAGGCAGTTTGAATTGGCACGTCTTATT 169672 ||||| || || | | | || ||||| ||| | | || ||||| | || || | || Sbjct 26714366 CATGGCGCTTTCGAACTAATAGGTTT-ATGTTACGTCAATTTGAGCTTGCTCGATCTGTT 26714424 Query 169673 GGCATCCGTCCTTATAATGCTATTGCATTCTCTGGTCCTATTGCTGTATTTGTCAGTGTC 169732 | | | |||| |||||| ||||||||||| ||||| |||||||| ||||| ||| Sbjct 26714425 GAATTGTGACCTTGTAATGCAATTGCATTCTCCGGTCCAATTGCTGT-TTTGTTTCTGTA 26714483 Query 169733 TTTCTTATCTACCCACTTGGACAGTCCTCATGGTTCTTTGCTCCCTCCTTTGGAGTATCA 169792 || || || || || | || ||||| ||||||||||| || ||||| ||| || Sbjct 26714484 TTCCTAATTTATCCGTTAGGTCAGTCTAGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCA 26714543 Query 169793 GCAATCTTCAGGTTCCTGTTGTTCCTGCAAGGATTCCACAACTGGACGTTGAATCCATTC 169852 || || || | ||| | | || | || || || || || ||||| | || ||||| Sbjct 26714544 GCTATATTTTGATTCATCCTCTTTTTYCAGGGGTTTCATAATTGGACACTAAACCCATTT 26714603 Query 169853 CACATGATGGGTGTAGCAGGAATCTTGGGCGGAGCATTGCTTTCTGCTATCCATGGTGTT 169912 || |||||||| || | || | ||||||| || ||| | | ||||| || |||| | Sbjct 26714604 CATATGATGGGAGTTGTTGGGGTGTTGGGCGCTGCTTTGTTATGCGCTATTCACGGTGCT 26714663 Query 169913 ACAGTAGAGAACACATTGTATGAAGACGGTGAGCAGGCAAATACTTTCAAGGCGTTTGAT 169972 | || | || || || | || ||| ||||| |||||||| ||| | || | Sbjct 26714664 ATCATAAAAAATACTTTATTTGGAGATGGTGATGGTGCAAATACATTCCGTGGTTTCAAC 26714723 Query 169973 TCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATC 170032 | || || | ||||| |||||||| |||||||| | |||| ||| ||||| || ||| Sbjct 26714724 CCAACTCAAGTTGAAGAAACTTATTCAATGGTCACCACTAACCRCTTTTGGTCCCAAATC 26714783 Query 170033 TTCGGTATTGCGTTTTCTAACAAGCGTTGGCTTCATTT 170070 || | |||| ||||| || || |||||| | ||||| Sbjct 26714784 TTTAGGGTTGCTTTTTCCAATAAACGTTGGTTACATTT 26714821 >seq672 Length=1945142 Score = 226 bits (250), Expect = 3e-54 Identities = 508/767 (66%), Gaps = 35/767 (5%) Strand=Plus/Minus Query 169307 TTCGATGTTCTCGATGACTGGCTCAAACGCGACCGCTTTGTATTCATTGGTTGGTCTGGT 169366 || ||| || | ||||||||| | | | ||||||| || || | ||||||||| | Sbjct 1649958 TTTGATATTATGGATGACTGGTTACGAAGGAACCGCTTCGTTTTTGTAGGTTGGTCTAGC 1649899 Query 169367 CTACTTCTTCTTCCCACTGCCTATCTTGCTATTGGAGGGTGGCTCACTGGTACAGCGTTT 169426 | | | || |||| ||||||| | ||| | || || ||| | || | Sbjct 1649898 CAATTACTCTTTCCTTGTGCCTATTTYGCTTTAGGGGGTTGGTT----GGAAT------- 1649850 Query 169427 GTTACTTCCTGGTACACCCACGGACTCGC---TTCCAGTTACTTAGAAGGCGCTAACTTC 169483 ||| || ||||| ||||| || | || |||| || || |||||| ||||||| Sbjct 1649849 -TTAATT--TGGTATACCCATAGATTAGCAAGTTCC---TATTTGGAAGGCTTTAACTTC 1649796 Query 169484 CTCACTGCTGCTGTCAGTACACCTGCTGACGCTATGGGACACTCACTGCTCTTGCTATGG 169543 | | || ||| || || || ||| | | | | |||| || | || |||||| Sbjct 1649795 TTAAGTGATGCAGTTTCCACTCCGGCTAATAGTTTAGCGCACTTCTTGTTGTTACTATGG 1649736 Query 169544 GGTCCAGAAGCACAAGGCGATTTCGTTCGCTGGTGTCAATTGGGTGGTCTCTGGAACTTT 169603 ||||| ||||||||||| ||||| ||| ||||||||||| || |||| | || ||| Sbjct 1649735 GGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCAGTCTATAGACTTTT 1649676 Query 169604 GTAGCACTTCATGGTGCATTTGCATTGATTGGTTTCATGCTTAGGCAGTTTGAATTGGCA 169663 || ||||| ||||| || || | | | || ||||| ||| | | || ||||| | || Sbjct 1649675 GTTGCACTACATGGCGCTTTCGGACTAATAGGTTT-ATGTTACGTCAATTTGAGCTTGCT 1649617 Query 169664 CGTCTTATTGGCATCCGTCCTTATAATGCTATTGCATTCTCTGGTCCTATTGCTGTATTT 169723 || | || | | |||| |||||| ||||||||||| ||||| |||||||| ||| Sbjct 1649616 CGATCTGTTSAATTGTGACCTTRTAATGCAATTGCATTCTCCGGTCCAATTGCTGTTTTT 1649557 Query 169724 GTCAGTGTCTTTCTTATCTACCCACTTGGACAGTCCTCATGGTTCTTTGCTCCCTCCTTT 169783 || ||| || || || || | | || ||||| ||||||||||| || ||| Sbjct 1649556 GTTTCTGTATTCCTAATTTATCYRTTAGGTCAGTCTRGTTGGTTCTTTGCACCTAGTTTT 1649497 Query 169784 GGAGTATCAGCAATCTTCAGGTTCCTGTTGTTCCTGCAAGGATTCCACAACTGGACGTTG 169843 || ||| |||| || || | ||| | | || | || || || || || ||||| | Sbjct 1649496 GGTGTAGCAGCTATATTTTGATTCATCCTCTTTTTYCAGGGGTTTCATAATTGGACACTA 1649437 Query 169844 AATCCATTCCACATGATGGGTGTAGCAGGAATCTTGGGCGGAGCATTGCTTTCTGCTATC 169903 || ||||| || |||||||| || | || | ||||||| || || | | ||||| Sbjct 1649436 AACCCATTTCATATGATGGGAGTTGTTGGGGTGTTGGGCGCTGCTYTGTTATGCGCTATT 1649377 Query 169904 CATGGTGTTACAGTAGAGAACACATTGTATGAAGACGGTGAGCAGGCAAATACTTTCAAG 169963 || |||| || || | || || || | || ||| | || |||| | Sbjct 1649376 CACGGTGCTATCATARAAAATACTTTATTTGGAGATG-------GGGAAATTC------- 1649331 Query 169964 GCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGG 170023 |||| | | || || | ||||| |||||||| |||||||| | |||| ||| ||| Sbjct 1649330 CGGTTTAACCCAACTCAAGTTGAAGAAACTTATTCAATGGTCACCACTAACCRCTTTTGG 1649271 Query 170024 TCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGTTGGCTTCATTT 170070 || || ||||| | |||| ||||| || || |||||| | ||||| Sbjct 1649270 TCCCAAATCTTTAGGGTTGCTTTTTCCAATAAACGTTGGTTACATTT 1649224 >seq629 Length=2291386 Score = 113 bits (124), Expect = 5e-20 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 168514 AACTACGGTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGT 168573 || |||||||||| || || ||||| |||||||| ||||| |||||||| ||||||||| Sbjct 2030033 AATTACGGTTACAGATTTGGTCAAGAGGAAGAAACCTACAATATCGTAGCGGCTCATGGT 2029974 Query 168574 TACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTC 168633 || || || | |||||||||||||| ||| || |||||||| | || || |||||| Sbjct 2029973 TATTTTGGCTGATTGATCTTCCAATATGCTAGTTTGAACAACTCTCATTCTTTACACTTC 2029914 Query 168634 TT 168635 || Sbjct 2029913 TT 2029912 >seq8 Length=29603939 Score = 113 bits (124), Expect = 5e-20 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 168514 AACTACGGTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGT 168573 || |||||||||| || || ||||| |||||||| ||||| |||||||| ||||||||| Sbjct 4091918 AATTACGGTTACAGATTTGGTCAAGAGGAAGAAACCTACAATATCGTAGCGGCTCATGGT 4091977 Query 168574 TACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTC 168633 || || || | |||||||||||||| ||| || |||||||| | || || |||||| Sbjct 4091978 TATTTTGGCTGATTGATCTTCCAATATGCTAGTTTGAACAACTCTCATTCTTTACACTTC 4092037 Query 168634 TT 168635 || Sbjct 4092038 TT 4092039 >seq12 Length=31678690 Score = 107 bits (118), Expect = 2e-18 Identities = 99/124 (80%), Gaps = 1/124 (1%) Strand=Plus/Minus Query 170177 GCAGCAGAAGATCCAGAATTT-GAGACCTTCTACACCAAAAACATCCTATTGAATGAAGG 170235 ||| | |||||||| |||||| ||||| |||||||||||||| || || || | |||||| Sbjct 15529651 GCAACGGAAGATCCTGAATTTTGAGACTTTCTACACCAAAAATATTCTCTTAAGTGAAGG 15529592 Query 170236 ACTTCGTGCATGGTTGGCACCTGCTGATCAACCACATGAAAACTTCATCTTCCCAGAAGA 170295 ||| ||| ||| ||||| || |||||||| ||||||||| | || ||||| ||||| Sbjct 15529591 TATTCATGCTTGGATGGCARCTTAAGATCAACCTCATGAAAACCTTATATTCCCTGAAGA 15529532 Query 170296 AGTT 170299 ||| Sbjct 15529531 GGTT 15529528 Score = 105 bits (116), Expect = 8e-18 Identities = 96/120 (80%), Gaps = 1/120 (1%) Strand=Plus/Minus Query 170177 GCAGCAGAAGATCCAGAATTT-GAGACCTTCTACACCAAAAACATCCTATTGAATGAAGG 170235 ||| | |||||||| |||||| ||||| |||||||||||||| || || || | |||||| Sbjct 15589922 GCAACGGAAGATCCTGAATTTTGAGACTTTCTACACCAAAAATATTCTCTTAAGTGAAGG 15589863 Query 170236 ACTTCGTGCATGGTTGGCACCTGCTGATCAACCACATGAAAACTTCATCTTCCCAGAAGA 170295 ||| ||| ||| ||||| || |||||||| ||||||||| | || ||||| ||||| Sbjct 15589862 TATTCATGCTTGGATGGCARCTTAAGATCAACCTCATGAAAACCTTATATTCCCTGAAGA 15589803 >seq11 Length=35299535 Score = 107 bits (118), Expect = 2e-18 Identities = 202/297 (68%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 170023 GTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGTTGGCTTCATTTTTTCATGTTGTT 170082 ||| || ||||| || |||| |||| || || | |||| | ||||| | ||||| || Sbjct 68910 GTCCCACATCTTTGGGGTTGCTGTTTCCAATAAACATTGGTTACATTTCCTTATGTTATT 68851 Query 170083 TGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCT 170142 ||| | || | ||| | |||| || ||| | | || || || | || || Sbjct 68850 TGTACTAGTAACCGGTTTATGGATGAGTGCTCTTGAAGTAGTGGGTCTGGCCTTGAACCT 68791 Query 170143 TCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGAC 170202 |||| || ||||| || |||| | ||| | || ||||||||| ||||||||||| Sbjct 68790 ACGTGTCTATGATTTTGTTTCTCAGAAAATCCATGTAGTAGAAGATCCTGAATTTGAGAC 68731 Query 170203 CTTCTACACCAAAAACATCCTATTGAATGAAGGACTTCGTGCATGGTTGGCACCTGCTGA 170262 ||||| ||||| || || || || |||||||| | | ||| ||| ||| || || Sbjct 68730 TTTCTAAACCAACAATATTCTCTTAAATGAAGGTATACATGCTTGGATGGTGGCTCAAGA 68671 Query 170263 TCAACCACATGAAAACTTCATCTTCCCAGAAGAAGTTCTTCCGAGAGGTAACGCACT 170319 ||| || |||||||| | || ||||| || || ||| | || | || ||||| || Sbjct 68670 TCAGCCTTATGAAAACCTTATATTCCCTGAGGAGGTTTTACCCCGTGGAAACGCTCT 68614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574464616669080