Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq9 255 7e-63 seq672 232 7e-56 seq1241 174 2e-38 seq13 165 9e-36 seq629 111 2e-19 seq8 111 2e-19 seq12 104 3e-17 seq1081 95.1 1e-14 seq725 87.8 2e-12 seq11 87.8 2e-12 >seq9 Length=33717675 Score = 255 bits (282), Expect = 7e-63 Identities = 445/640 (70%), Gaps = 6/640 (1%) Strand=Plus/Plus Query 165321 GTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGTGCAAACTTTCTTACTGCGG 165380 |||||||||| || | || |||||||||||| |||| || | ||||| | | || | Sbjct 26714187 GTTGGTATACCCATAGATTAGCAAGTTCCTATTTGGAAGGCTCTAACTTCTTAAGTGATG 26714246 Query 165381 CAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTT-CTCTGGGGTCCTGAG 165439 ||||||| ||||| || | | | | || | |||| | || || ||||||||||| Sbjct 26714247 CAGTTTCCACTCCGGCTAATAGTTTAGCGCACT-TCTTGTTGTTACTATGGGGTCCTGAA 26714305 Query 165440 GCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTC 165499 || ||||| ||||| | ||| ||| | || | || | | ||||||| || || Sbjct 26714306 GCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCAGTCTATAGACTTTTGTTGCACTA 26714365 Query 165500 CACGGGGCTTTCGCTCTAATTGGTTTCATGCTTCGTCAGTTTGAATTAGCACG-TCTCAT 165558 || || ||||||| ||||| ||||| ||| | ||||| ||||| | || || ||| | Sbjct 26714366 CATGGCGCTTTCGAACTAATAGGTTT-ATGTTACGTCAATTTGAGCTTGCTCGATCTGTT 26714424 Query 165559 CGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGT 165618 | | | || | ||||| ||||| ||||| ||||| || |||||||| ||| || Sbjct 26714425 GAAT-TGTGACCTTGTAATGCAATTGCATTCTCCGGTCCAATTGCTGTTTT-GTTTCTGT 26714482 Query 165619 CTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGC 165678 || || || || || | ||||| || |||||||| || || || ||| || || || Sbjct 26714483 ATTCCTAATTTATCCGTTAGGTCAGTCTAGTTGGTTCTTTGCACCTAGTTTTGGTGTAGC 26714542 Query 165679 AGCAATCTTCAGGTTCCTTCTCTTCCTACAAGGATTCCATAACTGGACCTTGAATCCCTT 165738 ||| || || | ||| | ||||| | || || || ||||| ||||| | || || || Sbjct 26714543 AGCTATATTTTGATTCATCCTCTTTTTYCAGGGGTTTCATAATTGGACACTAAACCCATT 26714602 Query 165739 TCATATGATGGGTGTTGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCCATCCATGGTGT 165798 |||||||||||| |||| || | |||| | ||| ||| | | || || || |||| Sbjct 26714603 TCATATGATGGGAGTTGTTGGGGTGTTGGGCGCTGCTTTGTTATGCGCTATTCACGGTGC 26714662 Query 165799 TACAGTAGAGAATACTCTGTATCAAGATGGTGACGATGCAAATACTTTCAAGGCATTTGA 165858 || || | |||||| | | | ||||||||| | ||||||||| ||| | || | Sbjct 26714663 TATCATAAAAAATACTTTATTTGGAGATGGTGATGGTGCAAATACATTCCGTGGTTTCAA 26714722 Query 165859 CTCTACTCAAGAGGAAGAAACCTACTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGAT 165918 | | ||||||| |||||||| || |||||||| || | |||| || ||||| || || Sbjct 26714723 CCCAACTCAAGTTGAAGAAACTTATTCAATGGTCACCACTAACCRCTTTTGGTCCCAAAT 26714782 Query 165919 CTTCGGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTC 165958 ||| | |||| ||| ||||| | ||||| |||||| Sbjct 26714783 CTTTAGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTC 26714822 >seq672 Length=1945142 Score = 232 bits (256), Expect = 7e-56 Identities = 509/757 (67%), Gaps = 37/757 (5%) Strand=Plus/Minus Query 165206 GATGACTGGCTTA--AACGAGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTT 165263 ||||||||| ||| || || | || ||||||||||| ||||||||| | | | || | Sbjct 1649946 GATGACTGG-TTACGAAGGA-ACCGCTTCGTTTTTGTAGGTTGGTCTAGCCAATTACTCT 1649889 Query 165264 TTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGCGACGAGTT 165323 |||| ||| ||| | ||| | || |||||| | ||| | || | || Sbjct 1649888 TTCCTTGTGCCTATTTYGCTTTAGGGGGTTGGTT-----GGAAT---TTA------ATTT 1649843 Query 165324 GGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGTGCAAACTTTCTTACTGCGGCAG 165383 ||||||| || | || |||||||||||| |||| || ||||| | | || |||| Sbjct 1649842 GGTATACCCATAGATTAGCAAGTTCCTATTTGGAAGGCTTTAACTTCTTAAGTGATGCAG 1649783 Query 165384 TTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTT-CTCTGGGGTCCTGAGGCT 165442 |||| ||||| || | | | | || | |||| | || || ||||||||||| || Sbjct 1649782 TTTCCACTCCGGCTAATAGTTTAGCGCACT-TCTTGTTGTTACTATGGGGTCCTGAAGCA 1649724 Query 165443 CAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCAC 165502 ||||| ||||| | ||| ||| | || | || | | ||||||| || || || Sbjct 1649723 CAAGGAGATTTTACTCGTTGGTGTCAATTAGGCAGTCTATAGACTTTTGTTGCACTACAT 1649664 Query 165503 GGGGCTTTCGCTCTAATTGGTTTCATGCTTCGTCAGTTTGAATTAGCACG-TCTCATCGG 165561 || ||||||| ||||| ||||| ||| | ||||| ||||| | || || ||| | Sbjct 1649663 GGCGCTTTCGGACTAATAGGTTT-ATGTTACGTCAATTTGAGCTTGCTCGATCTGTTSAA 1649605 Query 165562 TATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTT 165621 | | | || | ||||| ||||| ||||| ||||| || |||||||||||| || || Sbjct 1649604 T-TGTGACCTTRTAATGCAATTGCATTCTCCGGTCCAATTGCTGTTTTTGTTTCTGTATT 1649546 Query 165622 TCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGC 165681 || || || | | ||||| || ||||||| || || || ||| || || ||||| Sbjct 1649545 CCTAATTTATCYRTTAGGTCAGTCTRGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCAGC 1649486 Query 165682 AATCTTCAGGTTCCTTCTCTTCCTACAAGGATTCCATAACTGGACCTTGAATCCCTTTCA 165741 || || | ||| | ||||| | || || || ||||| ||||| | || || ||||| Sbjct 1649485 TATATTTTGATTCATCCTCTTTTTYCAGGGGTTTCATAATTGGACACTAAACCCATTTCA 1649426 Query 165742 TATGATGGGTGTTGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTAC 165801 ||||||||| |||| || | |||| | ||| || | | || || || |||| || Sbjct 1649425 TATGATGGGAGTTGTTGGGGTGTTGGGCGCTGCTYTGTTATGCGCTATTCACGGTGCTAT 1649366 Query 165802 AGTAGAGAATACTCTGTATCAAGATGGTGACGATGCAAATACTTTCAAGGCATTTGACTC 165861 || | |||||| | | | |||||| || || ||| | ||| || | Sbjct 1649365 CATARAAAATACTTTATTTGGAGATGGGGA------AA-----TTCCGG---TTTAACCC 1649320 Query 165862 TACTCAAGAGGAAGAAACCTACTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTT 165921 ||||||| |||||||| || |||||||| || | |||| || ||||| || ||||| Sbjct 1649319 AACTCAAGTTGAAGAAACTTATTCAATGGTCACCACTAACCRCTTTTGGTCCCAAATCTT 1649260 Query 165922 CGGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTC 165958 | |||| ||| ||||| | ||||| |||||| Sbjct 1649259 TAGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTC 1649223 >seq1241 Length=4265459 Score = 174 bits (192), Expect = 2e-38 Identities = 257/358 (72%), Gaps = 6/358 (2%) Strand=Plus/Minus Query 163825 TTGGTTGGTTCGGCGTTCTGATGATCCCTACGCTGCTTGCAGCAACCATCTGT-TTCATC 163883 |||| ||||| || ||| ||||||||| ||| | | | ||||| ||||| || || Sbjct 4250729 TTGGATGGTTTGGTGTTTTGATGATCCTTACTTTATTGACCGCAACT-TCTGTATTTATT 4250671 Query 163884 GTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGATGGTATTCGTGAACCTGTTGCAGGT 163943 | || ||| | ||||| || || | || || ||||||||||||||||||||| | || Sbjct 4250670 ATTGCTTTCATTGCTGCACCTCCAATAGATATTGATGGTATTCGTGAACCTGTTTCTGGA 4250611 Query 163944 TCGCTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTCGTCCAATGCAATT 164003 || | | ||||| | ||| || || | | |||| || |||| | || || || Sbjct 4250610 TCTTTACTTTATGGAAGCAATATTATTTTTTGTGCCATTATTCCTACTTCTGCAGCTATA 4250551 Query 164004 GGTCTTCACTTCTACCCCATTTGGGAAGCCGCATCCCTTGATGAATGGCTTTACAACGGT 164063 ||| | ||||| ||||| || |||||||| | || ||||||||||| | ||||| ||| Sbjct 4250550 GGTTTGCACTTTTACCCTATATGGGAAGCGACTTCTGTTGATGAATGGTTATACAATGGT 4250491 Query 164064 GGTCCTTTCCAACTTGTCGTCTTCCACTTCCTGATCG--GTATCTATGCATACATGGGTC 164121 ||||||| | || | || | |||||| | | | ||| || ||| ||| |||||| Sbjct 4250490 GGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCT-TGC-TACGTGGGTC 4250433 Query 164122 GTGAGTGGGAACTGTCTTACCGTCTTGGTATGCGTCCTTGGATTTGTGTTGCTTACTC 164179 ||||||||||||| || ||||| ||||| || ||||||||| |||||| || || Sbjct 4250432 GTGAGTGGGAACTTAGTTTTCGTCTGGGTATACGCCCTTGGATTGTTGTTGCATATTC 4250375 >seq13 Length=34719086 Score = 165 bits (182), Expect = 9e-36 Identities = 254/358 (71%), Gaps = 6/358 (2%) Strand=Plus/Plus Query 163825 TTGGTTGGTTCGGCGTTCTGATGATCCCTACGCTGCTTGCAGCAACCATCTGT-TTCATC 163883 |||| ||||| || ||| ||||||||| ||| | | | ||||| ||||| || || Sbjct 21513246 TTGGATGGTTTGGTGTTTTGATGATCCTTACTTTATTGACCGCAACT-TCTGTATTTATT 21513304 Query 163884 GTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGATGGTATTCGTGAACCTGTTGCAGGT 163943 | || ||| | |||| || || | || || ||||||||||||||||||||| | || Sbjct 21513305 ATTGCTTTCATTRCTGCACCTCCAATAGATATTGATGGTATTCGTGAACCTGTTTCTGGA 21513364 Query 163944 TCGCTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTCGTCCAATGCAATT 164003 || | | ||||| | ||| || || | | |||| || |||| | || || || Sbjct 21513365 TCTTTACTTTATGGAAGCAATATTATTTTTTGTGCCATTATTCCTACTTCTGCAGCTATA 21513424 Query 164004 GGTCTTCACTTCTACCCCATTTGGGAAGCCGCATCCCTTGATGAATGGCTTTACAACGGT 164063 ||| | ||||| ||||| || |||||||| | || ||||||||||| | ||||| ||| Sbjct 21513425 GGTTTGCACTTTTACCCTATATGGGAAGCGACTTCTGTTGATGAATGGTTATACAATGGT 21513484 Query 164064 GGTCCTTTCCAACTTGTCGTCTTCCACTTCCTGATCG--GTATCTATGCATACATGGGTC 164121 ||||||| | || | || | |||||| | | | ||| || ||| ||| |||||| Sbjct 21513485 GGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCT-TGC-TACGTGGGTC 21513542 Query 164122 GTGAGTGGGAACTGTCTTACCGTCTTGGTATGCGTCCTTGGATTTGTGTTGCTTACTC 164179 ||||||||||||| || ||| ||||| || ||||||||| |||||| || || Sbjct 21513543 GTGAGTGGGAACTTAGTTTTYKTCTGGGTATACGCCCTTGGATTGTTGTTGCATATTC 21513600 >seq629 Length=2291386 Score = 111 bits (122), Expect = 2e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 164414 AACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAAACATA 164473 |||||| |||| ||| | || || ||||||| ||||||||||| |||||||| || Sbjct 2030055 AACCACAGAAAATGAATATGCTAATTACGGTTACAGATTTGGTCAAGAGGAAGAAACCTA 2029996 Query 164474 CAACATTGTTGCCGCTCACGGTTACTTTGGTCGTCTGATCTTCCAATACGCTTCATTCAA 164533 ||| || || || ||||| ||||| ||||| | ||||||||||||| ||| || || Sbjct 2029995 CAATATCGTAGCGGCTCATGGTTATTTTGGCTGATTGATCTTCCAATATGCTAGTTTGAA 2029936 Query 164534 CAACTCCCGTTCCTTGCACTTCTT 164557 |||||| | ||| || |||||||| Sbjct 2029935 CAACTCTCATTCTTTACACTTCTT 2029912 >seq8 Length=29603939 Score = 111 bits (122), Expect = 2e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 164414 AACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAAACATA 164473 |||||| |||| ||| | || || ||||||| ||||||||||| |||||||| || Sbjct 4091896 AACCACAGAAAATGAATATGCTAATTACGGTTACAGATTTGGTCAAGAGGAAGAAACCTA 4091955 Query 164474 CAACATTGTTGCCGCTCACGGTTACTTTGGTCGTCTGATCTTCCAATACGCTTCATTCAA 164533 ||| || || || ||||| ||||| ||||| | ||||||||||||| ||| || || Sbjct 4091956 CAATATCGTAGCGGCTCATGGTTATTTTGGCTGATTGATCTTCCAATATGCTAGTTTGAA 4092015 Query 164534 CAACTCCCGTTCCTTGCACTTCTT 164557 |||||| | ||| || |||||||| Sbjct 4092016 CAACTCTCATTCTTTACACTTCTT 4092039 >seq12 Length=31678690 Score = 104 bits (114), Expect = 3e-17 Identities = 98/124 (79%), Gaps = 1/124 (1%) Strand=Plus/Minus Query 166064 GCAGCAGAAGACCCAGAGTTT-GAAACCTTCTACACGAAAAACATTCTCTTGAATGAAGG 166122 ||| | ||||| || || ||| || || |||||||| ||||| |||||||| | |||||| Sbjct 15529651 GCAACGGAAGATCCTGAATTTTGAGACTTTCTACACCAAAAATATTCTCTTAAGTGAAGG 15529592 Query 166123 TCTTCGTGCTTGGTTGGCACCAGTCGATCAACCGCATGAGAACTTTGTCTTCCCTGAAGA 166182 | ||| ||||||| ||||| | |||||||| ||||| ||| || | ||||||||||| Sbjct 15529591 TATTCATGCTTGGATGGCARCTTAAGATCAACCTCATGAAAACCTTATATTCCCTGAAGA 15529532 Query 166183 AGTT 166186 ||| Sbjct 15529531 GGTT 15529528 Score = 100 bits (110), Expect = 3e-16 Identities = 95/120 (79%), Gaps = 1/120 (1%) Strand=Plus/Minus Query 166064 GCAGCAGAAGACCCAGAGTTT-GAAACCTTCTACACGAAAAACATTCTCTTGAATGAAGG 166122 ||| | ||||| || || ||| || || |||||||| ||||| |||||||| | |||||| Sbjct 15589922 GCAACGGAAGATCCTGAATTTTGAGACTTTCTACACCAAAAATATTCTCTTAAGTGAAGG 15589863 Query 166123 TCTTCGTGCTTGGTTGGCACCAGTCGATCAACCGCATGAGAACTTTGTCTTCCCTGAAGA 166182 | ||| ||||||| ||||| | |||||||| ||||| ||| || | ||||||||||| Sbjct 15589862 TATTCATGCTTGGATGGCARCTTAAGATCAACCTCATGAAAACCTTATATTCCCTGAAGA 15589803 >seq1081 Length=585217 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/228 (70%), Gaps = 5/228 (2%) Strand=Plus/Minus Query 165644 TCGAGTTGGTTTTT--CGCTCCATCTTTCGGGGTCGCAGCAATCTTCAGGTTCCTTCTCT 165701 || |||||||| || ||||| || ||||| | | ||||| || || | ||| | |||| Sbjct 578917 TCTAGTTGGTTCTTTGCGCTCAAT-TTTCGTG-TGGCAGCTATATTTTGATTCATCCTCT 578860 Query 165702 TCCTACAAGGATTCCATAACTGGACCTTGAATCCCTTTCATATGATGGGTGTTGCAGGTA 165761 | | || || || ||||| || || ||||| |||||||||||| | |||| || Sbjct 578859 TTTTCCAGGGGTTTCATAATTGAACATTGAACTYATTTCATATGATGAGAGTTGTTGGAG 578800 Query 165762 TCCTGGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGAGAATACTCTGTATC 165821 | |||| ||| | | | | || ||||||||||| ||||| ||||| | | | Sbjct 578799 TGTTGGGCACTGCTCTRTTATGCACTATTCATGGTGTTACTGTAGAAGATACTTTATTTG 578740 Query 165822 AAGATGGTGACGATGCAAATACTTTCAAGGCATTTGACTCTACTCAAG 165869 |||||||||| | ||||||||| || | || || || | ||||||| Sbjct 578739 AAGATGGTGATGGTGCAAATACATTACATGC-CTTAACCCAACTCAAG 578693 >seq725 Length=1948186 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/125 (76%), Gaps = 1/125 (1%) Strand=Plus/Plus Query 166068 CAGAAGACCCAGAGTTTGAAACCTTCTACACGAAAAACATTCTCTTGAATGAAGGTCTTC 166127 || |||| || |||||||| || ||||||| ||||| |||||||| ||||||||| ||| Sbjct 1573254 CAAAAGATCCTGAGTTTGAGACTCTCTACACAAAAAATATTCTCTTAAATGAAGGTATTC 1573313 Query 166128 GTGCTTGGTTGGCACCAGTCGATCAACCGCATGAGAACT-TTGTCTTCCCTGAAGAAGTT 166186 |||||||| |||| | ||| | || ||||| || | || | ||| ||| || ||| Sbjct 1573314 GTGCTTGGATGGCGGCTCAAGATTAGCCTCATGAAAAATCTTATAATCCTTGAGGAGGTT 1573373 Query 166187 CTGCC 166191 || || Sbjct 1573374 CTACC 1573378 >seq11 Length=35299535 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/125 (76%), Gaps = 1/125 (1%) Strand=Plus/Plus Query 166068 CAGAAGACCCAGAGTTTGAAACCTTCTACACGAAAAACATTCTCTTGAATGAAGGTCTTC 166127 || |||| || |||||||| || ||||||| ||||| |||||||| ||||||||| ||| Sbjct 34851773 CAAAAGATCCTGAGTTTGAGACTCTCTACACAAAAAATATTCTCTTAAATGAAGGTATTC 34851832 Query 166128 GTGCTTGGTTGGCACCAGTCGATCAACCGCATGAGAACT-TTGTCTTCCCTGAAGAAGTT 166186 |||||||| |||| | ||| | || ||||| || | || | ||| ||| || ||| Sbjct 34851833 GTGCTTGGATGGCGGCTCAAGATTAGCCTCATGAAAAATCTTATAATCCTTGAGGAGGTT 34851892 Query 166187 CTGCC 166191 || || Sbjct 34851893 CTACC 34851897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556916091088440