Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq1241 158 1e-33 seq13 150 2e-31 seq629 98.7 1e-15 seq8 98.7 1e-15 seq376 95.1 1e-14 seq1185 91.5 2e-13 seq14 91.5 2e-13 >seq1241 Length=4265459 Score = 158 bits (174), Expect = 1e-33 Identities = 257/365 (70%), Gaps = 4/365 (1%) Strand=Plus/Minus Query 168524 CTTTATGTTGGTTGGTTCGGTGTCTTAATGATCCCATGTTTATTAACAGCAGCAGCATGT 168583 ||||| |||| ||||| ||||| || ||||||| |||||| || ||| | | ||| Sbjct 4250736 CTTTACATTGGATGGTTTGGTGTTTTGATGATCCTTACTTTATTGACCGCAACTTC-TGT 4250678 Query 168584 -TTCATTGTTGCATTTATTGCTGCACCACCTGTCGATATCGACGGAATCAGAGAACCTGT 168642 || ||| |||| || ||||||||||| || | ||||| || || || | |||||||| Sbjct 4250677 ATTTATTATTGCTTTCATTGCTGCACCTCCAATAGATATTGATGGTATTCGTGAACCTGT 4250618 Query 168643 AGCAGGTGCTCTAATGTATGGAAACAACATCATCTCAGGTGCAGTTGTTCCATCTTCAAA 168702 | || || || | ||||||| ||| || || | |||| || |||| |||| Sbjct 4250617 TTCTGGATCTTTACTTTATGGAAGCAATATTATTTTTTGTGCCATTATTCCTACTTCTGC 4250558 Query 168703 CGCAATCGGTCTACACTTCTACCCAATTTGGGAAGCAGCTACAATCGATGAGTGGTTATA 168762 || || ||| | ||||| ||||| || |||||||| || | | ||||| |||||||| Sbjct 4250557 AGCTATAGGTTTGCACTTTTACCCTATATGGGAAGCGACTTCTGTTGATGAATGGTTATA 4250498 Query 168763 TAATGGTGGTCCTTACCAGTTGGTAATCTTCCACTTCCTAATCGGAATCTCTGCCTACAT 168822 |||||||||||||| || | | | | |||||| || | || | || |||| | Sbjct 4250497 CAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACGT 4250438 Query 168823 GGGTAGACAGTGGGAA-TTATCATACAGACTAGGTATGAGACCTTGGATCTGTGTTGCTT 168881 |||| | |||||||| ||| | | | || ||||| | |||||||| |||||| | Sbjct 4250437 GGGTCGTGAGTGGGAACTTAGTTTTC-GTCTGGGTATACGCCCTTGGATTGTTGTTGCAT 4250379 Query 168882 ATTCA 168886 ||||| Sbjct 4250378 ATTCA 4250374 >seq13 Length=34719086 Score = 150 bits (166), Expect = 2e-31 Identities = 255/367 (69%), Gaps = 4/367 (1%) Strand=Plus/Plus Query 168524 CTTTATGTTGGTTGGTTCGGTGTCTTAATGATCCCATGTTTATTAACAGCAGCAGCATGT 168583 ||||| |||| ||||| ||||| || ||||||| |||||| || ||| | | ||| Sbjct 21513239 CTTTACATTGGATGGTTTGGTGTTTTGATGATCCTTACTTTATTGACCGCAACTTC-TGT 21513297 Query 168584 -TTCATTGTTGCATTTATTGCTGCACCACCTGTCGATATCGACGGAATCAGAGAACCTGT 168642 || ||| |||| || ||| ||||||| || | ||||| || || || | |||||||| Sbjct 21513298 ATTTATTATTGCTTTCATTRCTGCACCTCCAATAGATATTGATGGTATTCGTGAACCTGT 21513357 Query 168643 AGCAGGTGCTCTAATGTATGGAAACAACATCATCTCAGGTGCAGTTGTTCCATCTTCAAA 168702 | || || || | ||||||| ||| || || | |||| || |||| |||| Sbjct 21513358 TTCTGGATCTTTACTTTATGGAAGCAATATTATTTTTTGTGCCATTATTCCTACTTCTGC 21513417 Query 168703 CGCAATCGGTCTACACTTCTACCCAATTTGGGAAGCAGCTACAATCGATGAGTGGTTATA 168762 || || ||| | ||||| ||||| || |||||||| || | | ||||| |||||||| Sbjct 21513418 AGCTATAGGTTTGCACTTTTACCCTATATGGGAAGCGACTTCTGTTGATGAATGGTTATA 21513477 Query 168763 TAATGGTGGTCCTTACCAGTTGGTAATCTTCCACTTCCTAATCGGAATCTCTGCCTACAT 168822 |||||||||||||| || | | | | |||||| || | || | || |||| | Sbjct 21513478 CAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACGT 21513537 Query 168823 GGGTAGACAGTGGGAA-TTATCATACAGACTAGGTATGAGACCTTGGATCTGTGTTGCTT 168881 |||| | |||||||| ||| | || ||||| | |||||||| |||||| | Sbjct 21513538 GGGTCGTGAGTGGGAACTTAGTTTTY-KTCTGGGTATACGCCCTTGGATTGTTGTTGCAT 21513596 Query 168882 ATTCAGC 168888 ||||| | Sbjct 21513597 ATTCARC 21513603 >seq629 Length=2291386 Score = 98.7 bits (108), Expect = 1e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 169142 AACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGA 169201 || || ||||||| || |||||||| ||||||||||| ||||| || || || ||||| Sbjct 2030033 AATTACGGTTACAGATTTGGTCAAGAGGAAGAAACCTACAATATCGTAGCGGCTCATGGT 2029974 Query 169202 TACTTCGGTAGATTAATCTTCCAGTATGCAAGTTTCAACAACTC 169245 || || || |||| |||||||| ||||| ||||| |||||||| Sbjct 2029973 TATTTTGGCTGATTGATCTTCCAATATGCTAGTTTGAACAACTC 2029930 >seq8 Length=29603939 Score = 98.7 bits (108), Expect = 1e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 169142 AACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGA 169201 || || ||||||| || |||||||| ||||||||||| ||||| || || || ||||| Sbjct 4091918 AATTACGGTTACAGATTTGGTCAAGAGGAAGAAACCTACAATATCGTAGCGGCTCATGGT 4091977 Query 169202 TACTTCGGTAGATTAATCTTCCAGTATGCAAGTTTCAACAACTC 169245 || || || |||| |||||||| ||||| ||||| |||||||| Sbjct 4091978 TATTTTGGCTGATTGATCTTCCAATATGCTAGTTTGAACAACTC 4092021 >seq376 Length=2445099 Score = 95.1 bits (104), Expect = 1e-14 Identities = 123/171 (72%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 168500 TGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTAATGATCCCA 168559 ||| |||| |||||| | ||| | ||||| |||| ||||| ||||| || |||||||| Sbjct 1076015 TGGATAACYAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCT 1076074 Query 168560 TGTTTATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACCACCTGTCGA 168618 |||||| || || | | ||| || ||| |||| || ||||||||||| || || Sbjct 1076075 ACTTTATTGACCKCAACTTC-TGTATTTATTATTGCTTTCATTGCTGCACCTYYGGTAGA 1076133 Query 168619 TATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAA 168669 ||| || || || |||||||| | || || || | ||||||| ||| Sbjct 1076134 TATTGATGGTATTCRTGAACCTGTTTCTGGATCTTTACTTTATGGAARCAA 1076184 >seq1185 Length=2433339 Score = 91.5 bits (100), Expect = 2e-13 Identities = 123/171 (72%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 168500 TGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTAATGATCCCA 168559 ||| |||| |||||| | ||| | ||||| |||| ||||| ||||| || |||||||| Sbjct 1074392 TGGATAACYAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCT 1074451 Query 168560 TGTTTATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACCACCTGTCGA 168618 |||||| || || | | ||| || ||| |||| || ||||||||||| || || Sbjct 1074452 ACTTTATTGACCTCAACTTC-TGTATTTATTATTGCTTTCATTGCTGCACCTTYGGTAGA 1074510 Query 168619 TATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAA 168669 ||| || || || |||||||| | || || || | ||||||| ||| Sbjct 1074511 TATTGATGGTATTCRTGAACCTGTTTCTGGATCTTTACTTTATGGAARCAA 1074561 >seq14 Length=29158859 Score = 91.5 bits (100), Expect = 2e-13 Identities = 123/171 (72%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 168500 TGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTAATGATCCCA 168559 ||| |||| |||||| | ||| | ||||| |||| ||||| ||||| || |||||||| Sbjct 26472205 TGGATAACYAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCT 26472264 Query 168560 TGTTTATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACCACCTGTCGA 168618 |||||| || || | | ||| || ||| |||| || ||||||||||| || || Sbjct 26472265 ACTTTATTGACCTCAACTTC-TGTATTTATTATTGCTTTCATTGCTGCACCTTYGGTAGA 26472323 Query 168619 TATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAA 168669 ||| || || || |||||||| | || || || | ||||||| ||| Sbjct 26472324 TATTGATGGTATTCRTGAACCTGTTTCTGGATCTTTACTTTATGGAARCAA 26472374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564432773544480