Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq672 149 7e-31 seq1241 134 2e-26 seq9 134 2e-26 seq13 132 6e-26 seq15 100 3e-16 seq11 100 3e-16 seq8 100 3e-16 seq12 93.3 5e-14 >seq672 Length=1945142 Score = 149 bits (164), Expect = 7e-31 Identities = 398/610 (65%), Gaps = 25/610 (4%) Strand=Plus/Minus Query 172951 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 173010 |||||| || | || ||||||||| || | || ||||| || | || |||||| | Sbjct 1649958 TTTGATATTATGGATGACTGGTTACGAAGGAACCGCTTCGTTTTTGTAGGTTGGTCTAGC 1649899 Query 173011 CTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACTACCTTC 173070 | ||||| | |||||||| || | || | || |||||||| |||| | || Sbjct 1649898 CAATTACTCTTTCCTTGTGCCTATTTYGCTTTAGGGGGTTGGTT----GGAATTTAATT- 1649844 Query 173071 GTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGGAGCAAACTTTTTA 173130 |||||||| ||| | | ||| ||| ||| | ||||| ||||| ||| Sbjct 1649843 ---------TGGTATACCCATAGATTAGCAAGTTCCTATTTGGAAGGCTTTAACTTCTTA 1649793 Query 173131 ACAGCAGCAGTCTCCACACCTGGCGACGCAATGGGTCATAGT-CTTCT----GTTCCTTT 173185 | | ||||| ||||| || ||| | || | | | | ||||| ||| || | Sbjct 1649792 AGTGATGCAGTTTCCACTCC-GGCTA----ATAGTTTAGCGCACTTCTTGTTGTTACTAT 1649738 Query 173186 GGGGACCTGAAGCACAAGGTTCATTCGTACGTTGGTTACAACTCGGAGGACTATGGAACT 173245 |||| |||||||||||||| || ||||||| ||| | || | |||| || | Sbjct 1649737 GGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCAGTCTATAGACTT 1649678 Query 173246 TTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCCGTCAGTTTGAGATCG 173305 |||| ||| ||||||| | || ||||| |||||||| ||| | ||||| |||||| | | Sbjct 1649677 TTGTTGCACTACATGGCGCTTTCGGACTAATAGGTTT-ATGTTACGTCAATTTGAGCTTG 1649619 Query 173306 CAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCT 173365 | || ||| | |||||| || ||| | |||||||| | | || || || | Sbjct 1649618 CTCGATCTGTTSAATTGTGACCTTRTAATGCAATTGCATTCTCCGGTCCAATTGCTGTTT 1649559 Query 173366 TCACTAGCATCTTTTTAATCTACCCACTAGGGCAGCACAGTTGGTTCTTCGCACCTTCAT 173425 | | | || |||| || | |||| ||| |||||||||| |||||| | Sbjct 1649558 TTGTTTCTGTATTCCTAATTTATCYRTTAGGTCAGTCTRGTTGGTTCTTTGCACCTAGTT 1649499 Query 173426 TCGGTGTCGCAGCAATCTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACAT 173485 | ||||| ||||| || ||| | | ||| | || | || || || || || ||| Sbjct 1649498 TTGGTGTAGCAGCTATATTTTGATTCATCCTCTTTTTYCAGGGGTTTCATAATTGGACAC 1649439 Query 173486 TGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTACTATGTGCCA 173545 | || |||||||| |||||||| |||| || | | || | || | |||| || | Sbjct 1649438 TAAACCCATTTCATATGATGGGAGTTGTTGGGGTGTTGGGCGCTGCTYTGTTATGCGCTA 1649379 Query 173546 TTCATGGTGC 173555 |||| ||||| Sbjct 1649378 TTCACGGTGC 1649369 >seq1241 Length=4265459 Score = 134 bits (148), Expect = 2e-26 Identities = 184/257 (72%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 171854 TTTATGTTGGTTGGTTCGGTGTACTCATGATCCCATGTTTGCTCACAGCAGCAGCATGCT 171913 |||| |||| ||||| ||||| | ||||||| ||| | || ||| | | | Sbjct 4250735 TTTACATTGGATGGTTTGGTGTTTTGATGATCCTTACTTTATTGACCGCAACTTCTGTAT 4250676 Query 171914 TCATCGTTGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTTG 171973 | || |||| |||||||| |||||||| | ||||| || || || | ||||| ||| Sbjct 4250675 TTATTATTGCTTTCATTGCTGCACCTCCAATAGATATTGATGGTATTCGTGAACCTGTTT 4250616 Query 171974 CGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACG 172033 | || ||||| | ||||| | ||| || || | | |||| || |||| | || | Sbjct 4250615 CTGGATCTTTACTTTATGGAAGCAATATTATTTTTTGTGCCATTATTCCTACTTCTGCAG 4250556 Query 172034 CAATAGGTCTCCACTTCTACCCTATCTGGGAAGCAGCAACCGTAGATGAATGGTTGTACA 172093 | |||||| | ||||| |||||||| |||||||| | | || ||||||||||| |||| Sbjct 4250555 CTATAGGTTTGCACTTTTACCCTATATGGGAAGCGACTTCTGTTGATGAATGGTTATACA 4250496 Query 172094 ATGGTGGTCCTTATCAG 172110 |||||||||||||| || Sbjct 4250495 ATGGTGGTCCTTATGAG 4250479 >seq9 Length=33717675 Score = 134 bits (148), Expect = 2e-26 Identities = 322/481 (67%), Gaps = 12/481 (2%) Strand=Plus/Plus Query 173080 TGGTATACACATGGTATTGCATCTTCATATCTTGAAGGAGCAAACTTTTTAACAGCAGCA 173139 |||||||| ||| | | ||| ||| ||| | ||||| | ||||| |||| | ||| Sbjct 26714189 TGGTATACCCATAGATTAGCAAGTTCCTATTTGGAAGGCTCTAACTTCTTAAGTGATGCA 26714248 Query 173140 GTCTCCACACCTGGCGACGCAATGGGTCATAGT-CTTCT----GTTCCTTTGGGGACCTG 173194 || ||||| || ||| | || | | | | ||||| ||| || ||||| |||| Sbjct 26714249 GTTTCCACTCC-GGCTA----ATAGTTTAGCGCACTTCTTGTTGTTACTATGGGGTCCTG 26714303 Query 173195 AAGCACAAGGTTCATTCGTACGTTGGTTACAACTCGGAGGACTATGGAACTTTGTAGCAT 173254 |||||||||| || ||||||| ||| | || | |||| || ||||| ||| Sbjct 26714304 AAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCAGTCTATAGACTTTTGTTGCAC 26714363 Query 173255 TACATGGAGTCTTTGGACTCATAGGTTTCATGCTCCGTCAGTTTGAGATCGCAGGACTTG 173314 ||||||| | || | ||| |||||||| ||| | ||||| |||||| | || || || Sbjct 26714364 TACATGGCGCTTTCGAACTAATAGGTTT-ATGTTACGTCAATTTGAGCTTGCTCGATCTG 26714422 Query 173315 TAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTTCACTAGCA 173374 | | | |||||| || ||| | |||||||| | | || || || || | Sbjct 26714423 TTGAATTGTGACCTTGTAATGCAATTGCATTCTCCGGTCCAATTGCTGTTTTGTTTCTG- 26714481 Query 173375 TCTTTTTAATCTACCCACTAGGGCAGCACAGTTGGTTCTTCGCACCTTCATTCGGTGTCG 173434 | || |||| || || |||| ||| ||||||||||| |||||| || ||||| | Sbjct 26714482 TATTCCTAATTTATCCGTTAGGTCAGTCTAGTTGGTTCTTTGCACCTAGTTTTGGTGTAG 26714541 Query 173435 CAGCAATCTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAATCCAT 173494 |||| || ||| | | ||| | || | || || || || || ||| | || |||| Sbjct 26714542 CAGCTATATTTTGATTCATCCTCTTTTTYCAGGGGTTTCATAATTGGACACTAAACCCAT 26714601 Query 173495 TTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTACTATGTGCCATTCATGGTG 173554 |||| |||||||| |||| || | | || | || || |||| || ||||| |||| Sbjct 26714602 TTCATATGATGGGAGTTGTTGGGGTGTTGGGCGCTGCTTTGTTATGCGCTATTCACGGTG 26714661 Query 173555 C 173555 | Sbjct 26714662 C 26714662 >seq13 Length=34719086 Score = 132 bits (146), Expect = 6e-26 Identities = 183/257 (71%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 171854 TTTATGTTGGTTGGTTCGGTGTACTCATGATCCCATGTTTGCTCACAGCAGCAGCATGCT 171913 |||| |||| ||||| ||||| | ||||||| ||| | || ||| | | | Sbjct 21513240 TTTACATTGGATGGTTTGGTGTTTTGATGATCCTTACTTTATTGACCGCAACTTCTGTAT 21513299 Query 171914 TCATCGTTGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTTG 171973 | || |||| |||||| | |||||||| | ||||| || || || | ||||| ||| Sbjct 21513300 TTATTATTGCTTTCATTRCTGCACCTCCAATAGATATTGATGGTATTCGTGAACCTGTTT 21513359 Query 171974 CGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACG 172033 | || ||||| | ||||| | ||| || || | | |||| || |||| | || | Sbjct 21513360 CTGGATCTTTACTTTATGGAAGCAATATTATTTTTTGTGCCATTATTCCTACTTCTGCAG 21513419 Query 172034 CAATAGGTCTCCACTTCTACCCTATCTGGGAAGCAGCAACCGTAGATGAATGGTTGTACA 172093 | |||||| | ||||| |||||||| |||||||| | | || ||||||||||| |||| Sbjct 21513420 CTATAGGTTTGCACTTTTACCCTATATGGGAAGCGACTTCTGTTGATGAATGGTTATACA 21513479 Query 172094 ATGGTGGTCCTTATCAG 172110 |||||||||||||| || Sbjct 21513480 ATGGTGGTCCTTATGAG 21513496 >seq15 Length=47181002 Score = 100 bits (110), Expect = 3e-16 Identities = 159/226 (70%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 158422 GACATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCAT 158481 || |||| ||| ||| | ||| ||||||||| |||| ||||| || |||||||||||| Sbjct 849971 GATATTGTTGTTGGTTCTGCGCAGAGGTTTGGTGTTCCGATGGGGTATGGAGGTCCTCAT 849912 Query 158482 GCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG-- 158539 || || ||| | || || || | |||| ||||| | ||| || || |||||| | | Sbjct 849911 GCGGCTTTCCTCGCCACCTCACAAGAGTACAAGAGGATGATGCCAGGGAGAATTATCGGT 849852 Query 158540 GTCAGTCAGTAGATAGCGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGC 158599 || ||| || || | ||| || || | | | || | ||||| || |||| Sbjct 849851 GTTAGT--GTTGACTCCTCAGGGAAGCCTGCGTTGCGTATGGCGATGCAGACAAGGGAGC 849794 Query 158600 AGCATATCAGAAGAGACAAAGCAACCAGTAACATCTGCACAGCACA 158645 |||||||| | || ||||| || ||||| ||||| ||||| || || Sbjct 849793 AGCATATCCGGAGGGACAAGGCTACCAGCAACATTTGCACTGCTCA 849748 >seq11 Length=35299535 Score = 100 bits (110), Expect = 3e-16 Identities = 205/303 (68%), Gaps = 4/303 (1%) Strand=Plus/Minus Query 173688 GTCACAGATATTTGGTATCGCATTTTCAAACAAAAGATTTTTACACTTCCTCATGTTGTT 173747 ||| || || ||||| | || |||| || ||| | ||||| ||||| ||||| || Sbjct 68910 GTCCCACATCTTTGGGGTTGCTGTTTCCAATAAACATTGGTTACATTTCCTTATGTTATT 68851 Query 173748 CGTACCTGTCATGGGTATGTGGACA--TCATCCATAGGTATCGTAGGTCTTGCACTTAAC 173805 |||| || | ||| | |||| | || | ||| || ||||| || | ||| Sbjct 68850 TGTACTAGTAACCGGTTTATGGATGAGTGCTCTTGAAGTA--GTGGGTCTGGCCTTGAAC 68793 Query 173806 CTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGATCCAGAGTTCGAG 173865 || | | || || ||||| ||||| | || | || ||||||||| || || ||| Sbjct 68792 CTACGTGTCTATGATTTTGTTTCTCAGAAAATCCATGTAGTAGAAGATCCTGAATTTGAG 68733 Query 173866 ACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAGCATGGATGTCATCTGTA 173925 |||||||| || || ||||| || | ||||||||||| || |||||| || | Sbjct 68732 ACTTTCTAAACCAACAATATTCTCTTAAATGAAGGTATACATGCTTGGATGGTGGCTCAA 68673 Query 173926 GATCAACCACATGAGAACTTCGTATTTCCAGAAGAAGTGTTACCAAGAGGTAACGCACTT 173985 ||||| || |||| ||| | |||| || || || || ||||| | || ||||| ||| Sbjct 68672 GATCAGCCTTATGAAAACCTTATATTCCCTGAGGAGGTTTTACCCCGTGGAAACGCTCTT 68613 Query 173986 TAA 173988 ||| Sbjct 68612 TAA 68610 >seq8 Length=29603939 Score = 100 bits (110), Expect = 3e-16 Identities = 164/233 (70%), Gaps = 5/233 (2%) Strand=Plus/Plus Query 158422 GACATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCAT 158481 || |||| ||| ||| | ||| ||||||||| |||| ||||| || |||||||||||| Sbjct 7970414 GATATTGTTGTTGGTTCTGCGCAGAGGTTTGGTGTTCCGATGGGGTATGGAGGTCCTCAT 7970473 Query 158482 GCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG-- 158539 || || ||| | || || || | |||| ||||| | ||| || || |||||| | | Sbjct 7970474 GCGGCTTTCCTGGCCACCTCACAAGAGTACAAGAGGATGATGCCGGGGAGAATTATTGGT 7970533 Query 158540 GTCAGTCAGTAGATAGCGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGC 158599 || ||| || ||| | || || || | | || | ||||| || |||| Sbjct 7970534 GTTAGT--GTTGATTCCTCGGGGAAGCCTGCGCTGCGTATGGCTATGCAGACAAGGGAGC 7970591 Query 158600 AGCATATCA-GAAGAGACAAAGCAACCAGTAACATCTGCACAGCACAAGCACT 158651 ||||||||| || | |||||||| ||||| ||||| ||||| || || | ||| Sbjct 7970592 AGCATATCAGGAGGGGACAAAGCTACCAGCAACATTTGCACTGCTCAGGTACT 7970644 >seq12 Length=31678690 Score = 93.3 bits (102), Expect = 5e-14 Identities = 101/130 (78%), Gaps = 3/130 (2%) Strand=Plus/Minus Query 173842 GCAGCAGAAGATCCAGAGTTC-GAGACTTTCTACACTAAGAATATACTTCTTAA-TGAAG 173899 ||| | |||||||| || || |||||||||||||| || ||||| | |||||| ||||| Sbjct 15529651 GCAACGGAAGATCCTGAATTTTGAGACTTTCTACACCAAAAATATTC-TCTTAAGTGAAG 15529593 Query 173900 GTATGAGAGCATGGATGTCATCTGTAGATCAACCACATGAGAACTTCGTATTTCCAGAAG 173959 |||| || |||||| || || ||||||||| ||||| ||| | |||| || |||| Sbjct 15529592 GTATTCATGCTTGGATGGCARCTTAAGATCAACCTCATGAAAACCTTATATTCCCTGAAG 15529533 Query 173960 AAGTGTTACC 173969 | || ||||| Sbjct 15529532 AGGTTTTACC 15529523 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/131 (77%), Gaps = 4/131 (3%) Strand=Plus/Minus Query 173842 GCAGCAGAAGATCCAGAGTTC-GAGACTTTCTACACTAAGAATATACTTCTTAA-TGAAG 173899 ||| | |||||||| || || |||||||||||||| || ||||| | |||||| ||||| Sbjct 15589922 GCAACGGAAGATCCTGAATTTTGAGACTTTCTACACCAAAAATATTC-TCTTAAGTGAAG 15589864 Query 173900 GTATGAGAGCATGGATGTCATCTGTAGATCAACCACATGAGAACTTCGTATTTCCAGAAG 173959 |||| || |||||| || || ||||||||| ||||| ||| | |||| || |||| Sbjct 15589863 GTATTCATGCTTGGATGGCARCTTAAGATCAACCTCATGAAAACCTTATATTCCCTGAAG 15589804 Query 173960 A-AGTGTTACC 173969 | || ||||| Sbjct 15589803 AGGGTTTTACC 15589793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588042004349360