Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq9 275 7e-69 seq672 253 2e-62 seq629 104 3e-17 seq8 104 3e-17 seq1081 98.7 1e-15 >seq9 Length=33717675 Score = 275 bits (304), Expect = 7e-69 Identities = 447/637 (70%), Gaps = 6/637 (1%) Strand=Plus/Plus Query 163750 TGGTACACCCATGGACTGGCAACTTCCTATCTTGAGGGTGCTAATTTTCTCACAGCGGCT 163809 ||||| |||||| || | |||| ||||||| | || || |||| || | | | || Sbjct 26714189 TGGTATACCCATAGATTAGCAAGTTCCTATTTGGAAGGCTCTAACTTCTTAAGTGATGCA 26714248 Query 163810 GTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGGGTCCTGAGGC 163868 || || || || ||| | | | | || | |||| || || || ||||||||||| || Sbjct 26714249 GTTTCCACTCCGGCTAATAGTTTAGCGCACT-TCTTGTTGTTACTATGGGGTCCTGAAGC 26714307 Query 163869 TCAGGGCGATTTCGTCCGCTGGATCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCA 163928 || || ||||| || ||| ||| | || | || | || |||||| ||||| || Sbjct 26714308 ACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCAGTCTATAGACTTTTGTTGCACTACA 26714367 Query 163929 CGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGGCAATTTGAACTTGCTCGC-CTGATTG 163987 || || || | || || ||||| ||| | || |||||||| |||||||| ||| ||| Sbjct 26714368 TGGCGCTTTCGAACTAATAGGTTT-ATGTTACGTCAATTTGAGCTTGCTCGATCTG-TTG 26714425 Query 163988 GAATCAGACCCTACAATGCGATTGCTTTCTCTGGTCCTATTGCTGTCTTCGTTAGTGTCT 164047 | | |||| | ||||| ||||| ||||| ||||| |||||||| || ||| ||| | Sbjct 26714426 AATTGTGACCTTGTAATGCAATTGCATTCTCCGGTCCAATTGCTGTTTT-GTTTCTGTAT 26714484 Query 164048 TTCTCATCTACCCTCTGGGTCAATCAAGTTGGTTCTTCGCTCCATCTTTTGGAGTGGCAG 164107 | || || || || | ||||| || ||||||||||| || || |||||| || |||| Sbjct 26714485 TCCTAATTTATCCGTTAGGTCAGTCTAGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCAG 26714544 Query 164108 CAATCTTCAGATTCCTCTTATTCCTTCAAGGATTTCATAACTGGACTTTGAACCCCTTCC 164167 | || || ||||| || | || | || || |||||||| ||||| | ||||| || | Sbjct 26714545 CTATATTTTGATTCATCCTCTTTTTYCAGGGGTTTCATAATTGGACACTAAACCCATTTC 26714604 Query 164168 ATATGATGGGAGTTGCTGGTATACTAGGCGGAGCATTGCTATCTGCTATTCACGGAGTCA 164227 ||||||||||||||| ||| | | |||| || ||| ||| ||||||||||| | | Sbjct 26714605 ATATGATGGGAGTTGTTGGGGTGTTGGGCGCTGCTTTGTTATGCGCTATTCACGGTGCTA 26714664 Query 164228 CAGTTGAAAATACATTGTATGAAGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATT 164287 | ||||||| || | || |||||| || ||||| || || | || | Sbjct 26714665 TCATAAAAAATACTTTATTTGGAGATGGTGATGGTGCAAATACATTCCGTGGTTTCAACC 26714724 Query 164288 CGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCT 164347 | || || | ||||| |||||||| |||||||| | |||| ||| ||||| || |||| Sbjct 26714725 CAACTCAAGTTGAAGAAACTTATTCAATGGTCACCACTAACCRCTTTTGGTCCCAAATCT 26714784 Query 164348 TCGGTGTTGCGTTTTCTAACAAGCGGTGGCTTCATTT 164384 | | ||||| ||||| || || || ||| | ||||| Sbjct 26714785 TTAGGGTTGCTTTTTCCAATAAACGTTGGTTACATTT 26714821 >seq672 Length=1945142 Score = 253 bits (280), Expect = 2e-62 Identities = 518/767 (68%), Gaps = 35/767 (5%) Strand=Plus/Minus Query 163621 TTTGATGTCCTGGATGACTGGCTTAAGCGCGATC-GTTTCGTATTTATTGGTTGGTCTGG 163679 |||||| | ||||||||||| ||| | || | | ||||| ||| | ||||||||| | Sbjct 1649958 TTTGATATTATGGATGACTGG-TTACGAAGGAACCGCTTCGTTTTTGTAGGTTGGTCTAG 1649900 Query 163680 ATTACTACTTCTTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGTACAACTTT 163739 | |||| |||| ||| ||| | || | || || ||| | || | ||| Sbjct 1649899 CCAATTACTCTTTCCTTGTGCCTATTTYGCTTTAGGGGGTTGGTT----GGAA----TTT 1649848 Query 163740 CGTTACGTCGTGGTACACCCATGGACTGGCAACTTCCTATCTTGAGGGTGCTAATTTTCT 163799 || ||||| |||||| || | |||| ||||||| | || || ||| || | Sbjct 1649847 AATT------TGGTATACCCATAGATTAGCAAGTTCCTATTTGGAAGGCTTTAACTTCTT 1649794 Query 163800 CACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGG 163858 | | || || || || || ||| | | | | || | |||| || || || |||| Sbjct 1649793 AAGTGATGCAGTTTCCACTCCGGCTAATAGTTTAGCGCACT-TCTTGTTGTTACTATGGG 1649735 Query 163859 GTCCTGAGGCTCAGGGCGATTTCGTCCGCTGGATCCAACTTGGGGGACTCTGGAATTTTG 163918 ||||||| || || || ||||| || ||| ||| | || | || | || ||||| Sbjct 1649734 GTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCAGTCTATAGACTTTTG 1649675 Query 163919 TGGCACTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGGCAATTTGAACTTGCTC 163978 | ||||| || || || || | || || ||||| ||| | || |||||||| ||||||| Sbjct 1649674 TTGCACTACATGGCGCTTTCGGACTAATAGGTTT-ATGTTACGTCAATTTGAGCTTGCTC 1649616 Query 163979 GC-CTGATTGGAATCAGACCCTACAATGCGATTGCTTTCTCTGGTCCTATTGCTGTCTTC 164037 | ||| || | | |||| | ||||| ||||| ||||| ||||| |||||||| || Sbjct 1649615 GATCTG-TTSAATTGTGACCTTRTAATGCAATTGCATTCTCCGGTCCAATTGCTGTTTTT 1649557 Query 164038 GTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCAAGTTGGTTCTTCGCTCCATCTTTT 164097 ||| ||| || || || || | | ||||| || |||||||||| || || |||| Sbjct 1649556 GTTTCTGTATTCCTAATTTATCYRTTAGGTCAGTCTRGTTGGTTCTTTGCACCTAGTTTT 1649497 Query 164098 GGAGTGGCAGCAATCTTCAGATTCCTCTTATTCCTTCAAGGATTTCATAACTGGACTTTG 164157 || || ||||| || || ||||| || | || | || || |||||||| ||||| | Sbjct 1649496 GGTGTAGCAGCTATATTTTGATTCATCCTCTTTTTYCAGGGGTTTCATAATTGGACACTA 1649437 Query 164158 AACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGCGGAGCATTGCTATCTGCTATT 164217 ||||| || |||||||||||||||| ||| | | |||| || || ||| |||||| Sbjct 1649436 AACCCATTTCATATGATGGGAGTTGTTGGGGTGTTGGGCGCTGCTYTGTTATGCGCTATT 1649377 Query 164218 CACGGAGTCACAGTTGAAAATACATTGTATGAAGATGGAGAACAAGCAAACACCTTTAAG 164277 ||||| | | | ||||||| || | || |||||| | ||| || Sbjct 1649376 CACGGTGCTATCATARAAAATACTTTATTTGGAGATGG-------GGAAATTCC------ 1649330 Query 164278 GCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGG 164337 |||| | | || || | ||||| |||||||| |||||||| | |||| ||| ||| Sbjct 1649329 -GGTTTAACCCAACTCAAGTTGAAGAAACTTATTCAATGGTCACCACTAACCRCTTTTGG 1649271 Query 164338 TCGCAGATCTTCGGTGTTGCGTTTTCTAACAAGCGGTGGCTTCATTT 164384 || || ||||| | ||||| ||||| || || || ||| | ||||| Sbjct 1649270 TCCCAAATCTTTAGGGTTGCTTTTTCCAATAAACGTTGGTTACATTT 1649224 >seq629 Length=2291386 Score = 104 bits (114), Expect = 3e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 163036 AACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACATACAACATCGTCGCAGCCCATGGT 163095 || || ||||||| || |||||||| ||||| || ||||| ||||| || || |||||| Sbjct 2030033 AATTACGGTTACAGATTTGGTCAAGAGGAAGAAACCTACAATATCGTAGCGGCTCATGGT 2029974 Query 163096 TACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCCTTGCACTTC 163155 || || || | ||||||||||||||||| || |||||||| | ||| || |||||| Sbjct 2029973 TATTTTGGCTGATTGATCTTCCAATATGCTAGTTTGAACAACTCTCATTCTTTACACTTC 2029914 Query 163156 TT 163157 || Sbjct 2029913 TT 2029912 >seq8 Length=29603939 Score = 104 bits (114), Expect = 3e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 163036 AACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACATACAACATCGTCGCAGCCCATGGT 163095 || || ||||||| || |||||||| ||||| || ||||| ||||| || || |||||| Sbjct 4091918 AATTACGGTTACAGATTTGGTCAAGAGGAAGAAACCTACAATATCGTAGCGGCTCATGGT 4091977 Query 163096 TACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCCTTGCACTTC 163155 || || || | ||||||||||||||||| || |||||||| | ||| || |||||| Sbjct 4091978 TATTTTGGCTGATTGATCTTCCAATATGCTAGTTTGAACAACTCTCATTCTTTACACTTC 4092037 Query 163156 TT 163157 || Sbjct 4092038 TT 4092039 >seq1081 Length=585217 Score = 98.7 bits (108), Expect = 1e-15 Identities = 136/190 (72%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 164071 TCAAGTTGGTTCTT--CGCTCCATCTTTTGGAGTGGCAGCAATCTTCAGATTCCTCTTAT 164128 || ||||||||||| ||||| | |||| | |||||||| || || ||||| || | | Sbjct 578917 TCTAGTTGGTTCTTTGCGCTCAA--TTTTCGTGTGGCAGCTATATTTTGATTCATCCTCT 578860 Query 164129 TCCTTCAAGGATTTCATAACTGGACTTTGAACCCCTTCCATATGATGGGAGTTGCTGGTA 164188 | | || || |||||||| || || |||||| || ||||||||| |||||| ||| Sbjct 578859 TTTTCCAGGGGTTTCATAATTGAACATTGAACTYATTTCATATGATGAGAGTTGTTGGAG 578800 Query 164189 TACTAGGCGGAGCATTGCTATCTGCTATTCACGGAGTCACAGTTGAAAATACATTGTATG 164248 | | ||| || | ||| ||||||| || || || || ||| |||| || | || Sbjct 578799 TGTTGGGCACTGCTCTRTTATGCACTATTCATGGTGTTACTGTAGAAGATACTTTATTTG 578740 Query 164249 AAGATGGAGA 164258 ||||||| || Sbjct 578739 AAGATGGTGA 578730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557575280780200