Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq1241 138 2e-27 seq13 132 7e-26 seq629 89.7 8e-13 seq8 89.7 8e-13 >seq1241 Length=4265459 Score = 138 bits (152), Expect = 2e-27 Identities = 256/373 (69%), Gaps = 2/373 (1%) Strand=Plus/Minus Query 215317 TGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCG-CAG 215375 ||| |||| | | ||| |||| ||||||||||| | ||||| |||| | | | | | | Sbjct 4250746 TGAAAATCATCTTTACATTGGATGGTTTGGTGTTTTGATGAT-CCTTACTTTATTGACCG 4250688 Query 215376 CTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATCA 215435 | || || || || | || ||||| ||||||||||| | ||||| || || || Sbjct 4250687 CAACTTCTGTATTTATTATTGCTTTCATTGCTGCACCTCCAATAGATATTGATGGTATTC 4250628 Query 215436 GAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTAC 215495 | || || ||| |||| |||||| | ||||| | ||| || || | | |||| || | | Sbjct 4250627 GTGAACCTGTTTCTGGATCTTTACTTTATGGAAGCAATATTATTTTTTGTGCCATTATTC 4250568 Query 215496 CTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGACG 215555 ||| ||| || || || || ||||| |||||||| |||||||| | | ||||| | Sbjct 4250567 CTACTTCTGCAGCTATAGGTTTGCACTTTTACCCTATATGGGAAGCGACTTCTGTTGATG 4250508 Query 215556 AATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATTT 215615 ||||| | ||||||||||| |||| | || || | | |||||| | ||||| | Sbjct 4250507 AATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAG 4250448 Query 215616 CTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATCT 215675 || ||| || | ||||||||||| || | | ||||| | |||||||| Sbjct 4250447 CTTGCTACGTGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATACGCCCTTGGATTG 4250388 Query 215676 GTGTTGCTTACTC 215688 |||||| || || Sbjct 4250387 TTGTTGCATATTC 4250375 >seq13 Length=34719086 Score = 132 bits (146), Expect = 7e-26 Identities = 254/373 (68%), Gaps = 2/373 (1%) Strand=Plus/Plus Query 215317 TGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCG-CAG 215375 ||| |||| | | ||| |||| ||||||||||| | ||||| |||| | | | | | | Sbjct 21513229 TGAAAATCATCTTTACATTGGATGGTTTGGTGTTTTGATGAT-CCTTACTTTATTGACCG 21513287 Query 215376 CTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATCA 215435 | || || || || | || ||||| |||||||||| | ||||| || || || Sbjct 21513288 CAACTTCTGTATTTATTATTGCTTTCATTRCTGCACCTCCAATAGATATTGATGGTATTC 21513347 Query 215436 GAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTAC 215495 | || || ||| |||| |||||| | ||||| | ||| || || | | |||| || | | Sbjct 21513348 GTGAACCTGTTTCTGGATCTTTACTTTATGGAAGCAATATTATTTTTTGTGCCATTATTC 21513407 Query 215496 CTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGACG 215555 ||| ||| || || || || ||||| |||||||| |||||||| | | ||||| | Sbjct 21513408 CTACTTCTGCAGCTATAGGTTTGCACTTTTACCCTATATGGGAAGCGACTTCTGTTGATG 21513467 Query 215556 AATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATTT 215615 ||||| | ||||||||||| |||| | || || | | |||||| | ||||| | Sbjct 21513468 AATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAG 21513527 Query 215616 CTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATCT 215675 || ||| || | ||||||||||| || | ||||| | |||||||| Sbjct 21513528 CTTGCTACGTGGGTCGTGAGTGGGAACTTAGTTTTYKTCTGGGTATACGCCCTTGGATTG 21513587 Query 215676 GTGTTGCTTACTC 215688 |||||| || || Sbjct 21513588 TTGTTGCATATTC 21513600 >seq629 Length=2291386 Score = 89.7 bits (98), Expect = 8e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 215945 AACTACGGTTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGT 216004 || |||||||||| || || |||||||| ||||| ||||| |||||||| || || ||| Sbjct 2030033 AATTACGGTTACAGATTTGGTCAAGAGGAAGAAACCTACAATATCGTAGCGGCTCATGGT 2029974 Query 216005 TACTTTGGTCGCCTCATCTTCCAATACGCATCTTTCAACAACTC 216048 || ||||| | | ||||||||||| || ||| |||||||| Sbjct 2029973 TATTTTGGCTGATTGATCTTCCAATATGCTAGTTTGAACAACTC 2029930 >seq8 Length=29603939 Score = 89.7 bits (98), Expect = 8e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 215945 AACTACGGTTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGT 216004 || |||||||||| || || |||||||| ||||| ||||| |||||||| || || ||| Sbjct 4091918 AATTACGGTTACAGATTTGGTCAAGAGGAAGAAACCTACAATATCGTAGCGGCTCATGGT 4091977 Query 216005 TACTTTGGTCGCCTCATCTTCCAATACGCATCTTTCAACAACTC 216048 || ||||| | | ||||||||||| || ||| |||||||| Sbjct 4091978 TATTTTGGCTGATTGATCTTCCAATATGCTAGTTTGAACAACTC 4092021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 745069948786480