Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq9 316 2e-81 seq672 300 2e-76 seq1241 159 4e-34 seq13 154 2e-32 seq11 141 1e-28 seq629 95.1 1e-14 seq8 95.1 1e-14 seq1081 86.0 8e-12 seq376 84.2 3e-11 >seq9 Length=33717675 Score = 316 bits (350), Expect = 2e-81 Identities = 458/640 (72%), Gaps = 6/640 (1%) Strand=Plus/Plus Query 183308 GTTGGTATACCCATGGACTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTTACGGCA- 183366 |||||||||||||| || | || ||||||| | ||||| ||||||| |||| | | Sbjct 26714187 GTTGGTATACCCATAGATTAGCAAGTTCCTATTTGGAAGGCTCTAACTT-CTTAAGTGAT 26714245 Query 183367 GCTGTCTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCT-GTTACTTTGGGGTCCTGA 183425 || || || || || ||| | | | | || | |||| | |||||| ||||||||||| Sbjct 26714246 GCAGTTTCCACTCCGGCTAATAGTTTAGCGCACT-TCTTGTTGTTACTATGGGGTCCTGA 26714304 Query 183426 GTCTCAAGGGGACTTTCAACGCTGGTGCCAACTTGGGGGACTCTGGAATTTTGTGGCACT 183485 | ||||| || ||| || ||||| ||| | || | || | || |||||| ||||| Sbjct 26714305 AGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCAGTCTATAGACTTTTGTTGCACT 26714364 Query 183486 CCACGGTGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCGCTTGAT 183545 || || || || | || || ||||| ||| | || || ||||| |||||||| | | Sbjct 26714365 ACATGGCGCTTTCGAACTAATAGGTTT-ATGTTACGTCAATTTGAGCTTGCTCGATCTGT 26714423 Query 183546 TGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGT 183605 || | | |||| ||||| ||||| ||||| ||||| ||||||||||| || ||| Sbjct 26714424 TGAATTGTGACCTTGTAATGCAATTGCATTCTCCGGTCCAATTGCTGTTTT-GTTTCTGT 26714482 Query 183606 ATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGC 183665 |||||| || ||||| | ||||||||| |||||||||||||||||||| || ||||| Sbjct 26714483 ATTCCTAATTTATCCGTTAGGTCAGTCTAGTTGGTTCTTTGCACCTAGTTTTGGTGTAGC 26714542 Query 183666 AGCAATCTTTAGATTCCTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTT 183725 ||| || ||| ||||| | | || | ||||| || || || ||||| ||||||| || Sbjct 26714543 AGCTATATTTTGATTCATCCTCTTTTTYCAGGGGTTTCATAATTGGACACTAAACCCATT 26714602 Query 183726 CCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTACTCAGTGCTATCCATGGTGT 183785 |||||||||||||||| ||| | | || | || | | | ||||| || |||| Sbjct 26714603 TCATATGATGGGAGTTGTTGGGGTGTTGGGCGCTGCTTTGTTATGCGCTATTCACGGTGC 26714662 Query 183786 CACAGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTCAAGGCATTTGA 183845 | || | ||||| || | || |||||| || ||||| |||||| | || | Sbjct 26714663 TATCATAAAAAATACTTTATTTGGAGATGGTGATGGTGCAAATACATTCCGTGGTTTCAA 26714722 Query 183846 TTCCACTCAAGAAGAAGAGACGTATTCTATGGTTACAGCGAATCGTTTCTGGTCACAAAT 183905 | ||||||| ||||| || ||||| ||||| || | || | || ||||| ||||| Sbjct 26714723 CCCAACTCAAGTTGAAGAAACTTATTCAATGGTCACCACTAACCRCTTTTGGTCCCAAAT 26714782 Query 183906 CTTCGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTC 183945 ||| ||||||| ||| |||||| |||||||| || ||| Sbjct 26714783 CTTTAGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTC 26714822 >seq672 Length=1945142 Score = 300 bits (332), Expect = 2e-76 Identities = 450/639 (70%), Gaps = 19/639 (3%) Strand=Plus/Minus Query 183309 TTGGTATACCCATGGACTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTTACGGCA-G 183367 ||||||||||||| || | || ||||||| | ||||| |||||| |||| | | | Sbjct 1649844 TTGGTATACCCATAGATTAGCAAGTTCCTATTTGGAAGGCTTTAACTT-CTTAAGTGATG 1649786 Query 183368 CTGTCTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCT-GTTACTTTGGGGTCCTGAG 183426 | || || || || ||| | | | | || | |||| | |||||| ||||||||||| Sbjct 1649785 CAGTTTCCACTCCGGCTAATAGTTTAGCGCACT-TCTTGTTGTTACTATGGGGTCCTGAA 1649727 Query 183427 TCTCAAGGGGACTTTCAACGCTGGTGCCAACTTGGGGGACTCTGGAATTTTGTGGCACTC 183486 | ||||| || ||| || ||||| ||| | || | || | || |||||| ||||| Sbjct 1649726 GCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCAGTCTATAGACTTTTGTTGCACTA 1649667 Query 183487 CACGGTGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCGCTTGATT 183546 || || || || | || || ||||| ||| | || || ||||| |||||||| | || Sbjct 1649666 CATGGCGCTTTCGGACTAATAGGTTT-ATGTTACGTCAATTTGAGCTTGCTCGATCTGTT 1649608 Query 183547 GGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTA 183606 | | |||| ||||| ||||| ||||| ||||| |||||||||||||| |||| Sbjct 1649607 SAATTGTGACCTTRTAATGCAATTGCATTCTCCGGTCCAATTGCTGTTTTTGTTTCTGTA 1649548 Query 183607 TTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCA 183666 ||||| || |||| | ||||||||| |||||||||||||||||||| || |||||| Sbjct 1649547 TTCCTAATTTATCYRTTAGGTCAGTCTRGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCA 1649488 Query 183667 GCAATCTTTAGATTCCTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTTC 183726 || || ||| ||||| | | || | ||||| || || || ||||| ||||||| || Sbjct 1649487 GCTATATTTTGATTCATCCTCTTTTTYCAGGGGTTTCATAATTGGACACTAAACCCATTT 1649428 Query 183727 CATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTACTCAGTGCTATCCATGGTGTC 183786 |||||||||||||||| ||| | | || | || | | | ||||| || |||| Sbjct 1649427 CATATGATGGGAGTTGTTGGGGTGTTGGGCGCTGCTYTGTTATGCGCTATTCACGGTGCT 1649368 Query 183787 ACAGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTCAAGGCATTTGAT 183846 | || | ||||| || | || |||||| ||| |||| | ||| | Sbjct 1649367 ATCATARAAAATACTTTATTTGGAGATGGGGAA-----------ATTCCGG---TTTAAC 1649322 Query 183847 TCCACTCAAGAAGAAGAGACGTATTCTATGGTTACAGCGAATCGTTTCTGGTCACAAATC 183906 | ||||||| ||||| || ||||| ||||| || | || | || ||||| |||||| Sbjct 1649321 CCAACTCAAGTTGAAGAAACTTATTCAATGGTCACCACTAACCRCTTTTGGTCCCAAATC 1649262 Query 183907 TTCGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTC 183945 || ||||||| ||| |||||| |||||||| || ||| Sbjct 1649261 TTTAGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTC 1649223 >seq1241 Length=4265459 Score = 159 bits (176), Expect = 4e-34 Identities = 262/372 (70%), Gaps = 8/372 (2%) Strand=Plus/Minus Query 181821 AATCGTCTCTATGTCGGTTGGTTTGGTGTGCTGATGATCCCAACTCTGTTGGCGGCAACC 181880 |||| ||| || | || ||||||||||| ||||||||| ||| | ||| | |||| | Sbjct 4250742 AATCATCTTTACATTGGATGGTTTGGTGTTTTGATGATCCTTACTTTATTGACCGCAA-C 4250684 Query 181881 ATCTGT-TTCATCGTTGCTTTCGTAGCAGCACCTCCTGTCGATATCGACGGTATCCGCGA 181939 ||||| || || |||||||| | || |||||||| | ||||| || ||||| || || Sbjct 4250683 TTCTGTATTTATTATTGCTTTCATTGCTGCACCTCCAATAGATATTGATGGTATTCGTGA 4250624 Query 181940 ACCCGTAGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCATC 181999 ||| || |||| || | | ||||| | ||| || || | | |||| || | || | Sbjct 4250623 ACCTGTTTCTGGATCTTTACTTTATGGAAGCAATATTATTTTTTGTGCCATTATTCCTAC 4250564 Query 182000 CTCCAACGCAATTGGTCTTCACTTCTACCCAATCTGGGAAGCTGCCTCACTTGATGAGTG 182059 || || || ||| | ||||| ||||| || |||||||| | || ||||||| || Sbjct 4250563 TTCTGCAGCTATAGGTTTGCACTTTTACCCTATATGGGAAGCGACTTCTGTTGATGAATG 4250504 Query 182060 GCTGTATAACGGTGGTCCTTTCCAACTGGTTGTTTTCCACTTCCTGATCGGCATCTACGC 182119 | | || || |||||||||| | || ||||| | |||||| | | || | || || Sbjct 4250503 GTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGG--TGTA-GC 4250447 Query 182120 ---CTACATGGGACGTGAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCCTGGATCTG 182176 |||| |||| ||||||||||||||| || || | ||||| || || ||||| Sbjct 4250446 TTGCTACGTGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATACGCCCTTGGATTGT 4250387 Query 182177 TGTAGCATACTC 182188 ||| ||||| || Sbjct 4250386 TGTTGCATATTC 4250375 >seq13 Length=34719086 Score = 154 bits (170), Expect = 2e-32 Identities = 262/377 (69%), Gaps = 8/377 (2%) Strand=Plus/Plus Query 181821 AATCGTCTCTATGTCGGTTGGTTTGGTGTGCTGATGATCCCAACTCTGTTGGCGGCAACC 181880 |||| ||| || | || ||||||||||| ||||||||| ||| | ||| | |||| | Sbjct 21513233 AATCATCTTTACATTGGATGGTTTGGTGTTTTGATGATCCTTACTTTATTGACCGCAA-C 21513291 Query 181881 ATCTGT-TTCATCGTTGCTTTCGTAGCAGCACCTCCTGTCGATATCGACGGTATCCGCGA 181939 ||||| || || |||||||| | | |||||||| | ||||| || ||||| || || Sbjct 21513292 TTCTGTATTTATTATTGCTTTCATTRCTGCACCTCCAATAGATATTGATGGTATTCGTGA 21513351 Query 181940 ACCCGTAGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCATC 181999 ||| || |||| || | | ||||| | ||| || || | | |||| || | || | Sbjct 21513352 ACCTGTTTCTGGATCTTTACTTTATGGAAGCAATATTATTTTTTGTGCCATTATTCCTAC 21513411 Query 182000 CTCCAACGCAATTGGTCTTCACTTCTACCCAATCTGGGAAGCTGCCTCACTTGATGAGTG 182059 || || || ||| | ||||| ||||| || |||||||| | || ||||||| || Sbjct 21513412 TTCTGCAGCTATAGGTTTGCACTTTTACCCTATATGGGAAGCGACTTCTGTTGATGAATG 21513471 Query 182060 GCTGTATAACGGTGGTCCTTTCCAACTGGTTGTTTTCCACTTCCTGATCGGCATCTACGC 182119 | | || || |||||||||| | || ||||| | |||||| | | || | || || Sbjct 21513472 GTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGG--TGTA-GC 21513528 Query 182120 ---CTACATGGGACGTGAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCCTGGATCTG 182176 |||| |||| ||||||||||||||| || | ||||| || || ||||| Sbjct 21513529 TTGCTACGTGGGTCGTGAGTGGGAACTTAGTTTTYKTCTGGGTATACGCCCTTGGATTGT 21513588 Query 182177 TGTAGCATACTCTGCTC 182193 ||| ||||| || ||| Sbjct 21513589 TGTTGCATATTCARCTC 21513605 >seq11 Length=35299535 Score = 141 bits (156), Expect = 1e-28 Identities = 213/303 (70%), Gaps = 0/303 (0%) Strand=Plus/Minus Query 183897 GTCACAAATCTTCGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTT 183956 ||| || ||||| |||||||| || |||||| | |||||| || ||| ||||||| || Sbjct 68910 GTCCCACATCTTTGGGGTTGCTGTTTCCAATAAACATTGGTTACATTTCCTTATGTTATT 68851 Query 183957 TGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTTGCTCTTAATCT 184016 ||| | || | ||| | ||| | | || ||| | | || || || | || || Sbjct 68850 TGTACTAGTAACCGGTTTATGGATGAGTGCTCTTGAAGTAGTGGGTCTGGCCTTGAACCT 68791 Query 184017 TCGTGCTTATGATTTTGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGAC 184076 |||| ||||||||||| ||| | ||| | || ||||||||| ||||||||||| Sbjct 68790 ACGTGTCTATGATTTTGTTTCTCAGAAAATCCATGTAGTAGAAGATCCTGAATTTGAGAC 68731 Query 184077 GTTCTACACAAAGAACATACTTCTTAATGAAGGACTACGTGCATGGTTAGCACCTTCTGA 184136 ||||| || || || || || | |||||||| ||| ||| ||| | | || || Sbjct 68730 TTTCTAAACCAACAATATTCTCTTAAATGAAGGTATACATGCTTGGATGGTGGCTCAAGA 68671 Query 184137 TCAACCACATGAGAATTTTATATTTCCAGAGGAGGTATTACCTAGAGGCAATGCTCTTTG 184196 ||| || |||| || ||||||| || |||||||| ||||| | || || ||||||| Sbjct 68670 TCAGCCTTATGAAAACCTTATATTCCCTGAGGAGGTTTTACCCCGTGGAAACGCTCTTTA 68611 Query 184197 ATG 184199 ||| Sbjct 68610 ATG 68608 >seq629 Length=2291386 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 182445 AACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTATAACATCGTTGCAGCCCATGGC 182504 || || ||||||| || |||||||| ||||| ||||| || ||||| || || ||||| Sbjct 2030033 AATTACGGTTACAGATTTGGTCAAGAGGAAGAAACCTACAATATCGTAGCGGCTCATGGT 2029974 Query 182505 TACTTCGGTCGTTTGATCTTCCAATACGCATCATTCAACAACTCCCGTTCCTTGCACTTC 182564 || || || | |||||||||||||| || || |||||||| | ||| || |||||| Sbjct 2029973 TATTTTGGCTGATTGATCTTCCAATATGCTAGTTTGAACAACTCTCATTCTTTACACTTC 2029914 Query 182565 TT 182566 || Sbjct 2029913 TT 2029912 >seq8 Length=29603939 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 182445 AACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTATAACATCGTTGCAGCCCATGGC 182504 || || ||||||| || |||||||| ||||| ||||| || ||||| || || ||||| Sbjct 4091918 AATTACGGTTACAGATTTGGTCAAGAGGAAGAAACCTACAATATCGTAGCGGCTCATGGT 4091977 Query 182505 TACTTCGGTCGTTTGATCTTCCAATACGCATCATTCAACAACTCCCGTTCCTTGCACTTC 182564 || || || | |||||||||||||| || || |||||||| | ||| || |||||| Sbjct 4091978 TATTTTGGCTGATTGATCTTCCAATATGCTAGTTTGAACAACTCTCATTCTTTACACTTC 4092037 Query 182565 TT 182566 || Sbjct 4092038 TT 4092039 >seq1081 Length=585217 Score = 86.0 bits (94), Expect = 8e-12 Identities = 143/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 183626 GTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTTAGATTCCTAT 183685 || ||||| ||||||||||| | | ||| | || ||||| || ||| ||||| | Sbjct 578922 GTTAGTCTAGTTGGTTCTTTGCGCTCAATTTTCGTGTGGCAGCTATATTTTGATTCATCC 578863 Query 183686 TGTTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTTCCATATGATGGGAGTTGCTG 183745 | || | ||||| || || || || || || ||| || ||||||||| |||||| || Sbjct 578862 TCTTTTTCCAGGGGTTTCATAATTGAACATTGAACTYATTTCATATGATGAGAGTTGTTG 578803 Query 183746 GTATACTAGGAGGAGCACTACTCAGTGCTATCCATGGTGTCACAGTAGAGAATACATTGT 183805 | | | || || || | | |||| |||||||| || ||||| |||| || | Sbjct 578802 GAGTGTTGGGCACTGCTCTRTTATGCACTATTCATGGTGTTACTGTAGAAGATACTTTAT 578743 Query 183806 ATGAAGATGGAGAACAAGCAAACACATT 183833 ||||||||| || ||||| ||||| Sbjct 578742 TTGAAGATGGTGATGGTGCAAATACATT 578715 >seq376 Length=2445099 Score = 84.2 bits (92), Expect = 3e-11 Identities = 110/153 (72%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 181821 AATCGTCTCTATGTCGGTTGGTTTGGTGTGCTGATGATCCCAACTCTGTTGGCGGCAACC 181880 || ||||| || | || ||||||||||| |||||||||| ||| | ||| | ||| | Sbjct 1076033 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCKCAA-C 1076091 Query 181881 ATCTGT-TTCATCGTTGCTTTCGTAGCAGCACCTCCTGTCGATATCGACGGTATCCGCGA 181939 ||||| || || |||||||| | || |||||| || ||||| || ||||| | || Sbjct 1076092 TTCTGTATTTATTATTGCTTTCATTGCTGCACCTYYGGTAGATATTGATGGTATTCRTGA 1076151 Query 181940 ACCCGTAGCTGGTTCACTCATGTATGGTAACAA 181972 ||| || |||| || | | ||||| | ||| Sbjct 1076152 ACCTGTTTCTGGATCTTTACTTTATGGAARCAA 1076184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611686434603800