Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq1241 145 9e-30 seq13 138 1e-27 seq629 89.7 6e-13 seq8 89.7 6e-13 >seq1241 Length=4265459 Score = 145 bits (160), Expect = 9e-30 Identities = 245/355 (69%), Gaps = 0/355 (0%) Strand=Plus/Minus Query 169730 TTGGTTGGTTCGGTGTCTTGATGATCCCATGTCTATTAGCAGCAGCAACCTGCTTTATCG 169789 |||| ||||| ||||| |||||||||| | |||| | ||| | | ||||| Sbjct 4250729 TTGGATGGTTTGGTGTTTTGATGATCCTTACTTTATTGACCGCAACTTCTGTATTTATTA 4250670 Query 169790 TTGCTTTCATCGCAGCTCCACCTGTGGACATCGATGGAATCAGAGAACCTGTAGCAGGTT 169849 |||||||||| || || || || | || || ||||| || | |||||||| | || | Sbjct 4250669 TTGCTTTCATTGCTGCACCTCCAATAGATATTGATGGTATTCGTGAACCTGTTTCTGGAT 4250610 Query 169850 CATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCG 169909 | || | ||||| | ||| || || | | |||| || |||| |||| || || | Sbjct 4250609 CTTTACTTTATGGAAGCAATATTATTTTTTGTGCCATTATTCCTACTTCTGCAGCTATAG 4250550 Query 169910 GTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTAGATGAGTGGTTGTATAACGGTG 169969 || | ||||| || ||||| |||||||| | || | ||||| ||||| || || |||| Sbjct 4250549 GTTTGCACTTTTACCCTATATGGGAAGCGACTTCTGTTGATGAATGGTTATACAATGGTG 4250490 Query 169970 GTCCTTATCAATTAGTTATCTTCCACTTCCTTATCGGAATCTCTGCCTACATGGGTAGAC 170029 |||||||| | || || | | |||||| | | || | || |||| ||||| | Sbjct 4250489 GTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACGTGGGTCGTG 4250430 Query 170030 AGTGGGAACTATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTAGCATATTC 170084 |||||||||| | ||| | ||||| || |||||||| ||| |||||||| Sbjct 4250429 AGTGGGAACTTAGTTTTCGTCTGGGTATACGCCCTTGGATTGTTGTTGCATATTC 4250375 >seq13 Length=34719086 Score = 138 bits (152), Expect = 1e-27 Identities = 245/360 (68%), Gaps = 0/360 (0%) Strand=Plus/Plus Query 169730 TTGGTTGGTTCGGTGTCTTGATGATCCCATGTCTATTAGCAGCAGCAACCTGCTTTATCG 169789 |||| ||||| ||||| |||||||||| | |||| | ||| | | ||||| Sbjct 21513246 TTGGATGGTTTGGTGTTTTGATGATCCTTACTTTATTGACCGCAACTTCTGTATTTATTA 21513305 Query 169790 TTGCTTTCATCGCAGCTCCACCTGTGGACATCGATGGAATCAGAGAACCTGTAGCAGGTT 169849 |||||||||| | || || || | || || ||||| || | |||||||| | || | Sbjct 21513306 TTGCTTTCATTRCTGCACCTCCAATAGATATTGATGGTATTCGTGAACCTGTTTCTGGAT 21513365 Query 169850 CATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCG 169909 | || | ||||| | ||| || || | | |||| || |||| |||| || || | Sbjct 21513366 CTTTACTTTATGGAAGCAATATTATTTTTTGTGCCATTATTCCTACTTCTGCAGCTATAG 21513425 Query 169910 GTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTAGATGAGTGGTTGTATAACGGTG 169969 || | ||||| || ||||| |||||||| | || | ||||| ||||| || || |||| Sbjct 21513426 GTTTGCACTTTTACCCTATATGGGAAGCGACTTCTGTTGATGAATGGTTATACAATGGTG 21513485 Query 169970 GTCCTTATCAATTAGTTATCTTCCACTTCCTTATCGGAATCTCTGCCTACATGGGTAGAC 170029 |||||||| | || || | | |||||| | | || | || |||| ||||| | Sbjct 21513486 GTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACGTGGGTCGTG 21513545 Query 170030 AGTGGGAACTATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTAGCATATTCTGCTC 170089 |||||||||| | | | ||||| || |||||||| ||| |||||||| ||| Sbjct 21513546 AGTGGGAACTTAGTTTTYKTCTGGGTATACGCCCTTGGATTGTTGTTGCATATTCARCTC 21513605 >seq629 Length=2291386 Score = 89.7 bits (98), Expect = 6e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 170341 AACTATGGATACAAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGA 170400 || || || |||| ||| || ||||| |||||||| ||||| || || || || ||||| Sbjct 2030033 AATTACGGTTACAGATTTGGTCAAGAGGAAGAAACCTACAATATCGTAGCGGCTCATGGT 2029974 Query 170401 TACTTTGGTAGACTTATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTC 170460 || ||||| || | ||||||||||||||||| || ||||| || | | | |||||| Sbjct 2029973 TATTTTGGCTGATTGATCTTCCAATATGCTAGTTTGAACAACTCTCATTCTTTACACTTC 2029914 Query 170461 TT 170462 || Sbjct 2029913 TT 2029912 >seq8 Length=29603939 Score = 89.7 bits (98), Expect = 6e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 170341 AACTATGGATACAAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGA 170400 || || || |||| ||| || ||||| |||||||| ||||| || || || || ||||| Sbjct 4091918 AATTACGGTTACAGATTTGGTCAAGAGGAAGAAACCTACAATATCGTAGCGGCTCATGGT 4091977 Query 170401 TACTTTGGTAGACTTATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTC 170460 || ||||| || | ||||||||||||||||| || ||||| || | | | |||||| Sbjct 4091978 TATTTTGGCTGATTGATCTTCCAATATGCTAGTTTGAACAACTCTCATTCTTTACACTTC 4092037 Query 170461 TT 170462 || Sbjct 4092038 TT 4092039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582838885714400