Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq15 118 1e-21 seq486 98.7 1e-15 >seq15 Length=47181002 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||||||||| | ||| | ||| |||| ||| ||||||| |||||||| ||||| ||| Sbjct 34780774 CCTCCTTGATCAACATAACGGGCCGTATCATTAAAAACTCTCAACATTGGAACAATGCCA 34780833 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || || | ||||| ||||| ||||||||| || | || | || ||| || ||| Sbjct 34780834 TTGGAGGTTCCATTTGTTCCACGAATATAACTGCCTGTGGCACGGATGTTATGAACTGAG 34780893 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || || || || || | |||||| ||| | |||||||||||| Sbjct 34780894 ACACCAATTCCTCCAGCTGACTTGCTGATAACAGCACATTCTTTCAAGGTATCATAAATG 34780953 Query 48540 CCTTCTATACTATCATCTATCAT 48562 ||||| || ||||||||| |||| Sbjct 34780954 CCTTCAATGCTATCATCTTTCAT 34780976 Score = 86.0 bits (94), Expect = 7e-12 Identities = 110/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 |||||| ||||| || | || ||||| |||||| | ||||| || || | || | Sbjct 34781109 AGTTCCAGAATTGAAGAGGGTGGGAGAAGCATGAGTGAACCACCGCTGAGACATCAGGTG 34781168 Query 48659 ATATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTA 48717 |||||| | ||||||||||| ||||| | ||| || || || | ||| || | ||||| Sbjct 34781169 ATATGTCTTGATAACAGAATCGATATCATCCTTG-TGAATCCCAACAGAAACCCTCATTA 34781227 Query 48718 ACATATATTGAGGTCTTTCAACAATTTTG 48746 ||| | |||||||||||| |||| |||| Sbjct 34781228 GCATGTGTTGAGGTCTTTCCACAACTTTG 34781256 >seq486 Length=229640 Score = 98.7 bits (108), Expect = 1e-15 Identities = 143/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||||||||| | ||| | ||||||| || |||||| |||||||| ||||| ||| Sbjct 170580 CCTCCTTGATCAACATAACGAGCAGTATCATTGAAAACTCGCAACATTGGAACAATGCCA 170521 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || || | ||||| ||||| ||||||||| || | || | || || | || Sbjct 170520 TTGGAGGTTCCATTTGTTCCACGAATATAACTGCCTGTGGCCCGAATGTTGTGGACAGAG 170461 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || || || ||| || | |||||| ||| | |||||||||||| Sbjct 170460 ACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACATTCTTTTAAGGTATCATAAATG 170401 Query 48540 CCTTCTATACTATCATCTATCA 48561 ||||| || ||||||||| ||| Sbjct 170400 CCTTCAATGCTATCATCTTTCA 170379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562100010023640