Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq1241 123 7e-24 seq13 120 9e-23 seq376 100 8e-17 >seq1241 Length=4265459 Score = 123 bits (136), Expect = 7e-24 Identities = 270/399 (68%), Gaps = 8/399 (2%) Strand=Plus/Minus Query 25817 ACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCCTGCTTA 25876 || || | ||| || | ||| || | |||||||| || || | ||||| || | ||| Sbjct 4250754 ACCAGCATTGAAAATCATCTTTACATTGGATGGTTTGGTGTTTTGATGAT-CCTTACTTT 4250696 Query 25877 CTCG-CAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACCGCCTGTAGATATAG 25934 | | | || ||| | ||| ||||| |||| ||||| || ||||| || ||||||| | Sbjct 4250695 ATTGACCGCAACTTC-TGTATTTATTATTGCTTTCATTGCTGCACCTCCAATAGATATTG 4250637 Query 25935 ATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATATCAGGAG 25994 |||| || ||||| || ||||| || || ||| | || |||| |||||| || | | | Sbjct 4250636 ATGGTATTCGTGAACCTGTTTCTGGATCTTTACTTTATGGAAGCAATATTATTTTTTGTG 4250577 Query 25995 CAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATCTGGGAAGCTGGCA 26054 | | | || | ||| || || || | || |||||||| || |||||||| Sbjct 4250576 CCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCTATATGGGAAGCGACTT 4250517 Query 26055 CACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTATCTTCCACTTCTTAA 26114 | | || || ||| |||||||||| || || ||| | || ||| | | ||||||||| Sbjct 4250516 CTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTAC 4250457 Query 26115 TAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACAGACTAGGAATGAGAC 26174 | || ||||| || | || | |||||||||| || | || || || | | Sbjct 4250456 TTGGTGTAGCTTGCTACGTGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATACGCC 4250397 Query 26175 CATGGATATTTGTTGCATATACAGC----ACCACTATCC 26209 | ||||| ||||||||||| || | |||| ||||| Sbjct 4250396 CTTGGATTGTTGTTGCATATTCAACTCTTACCATTATCC 4250358 >seq13 Length=34719086 Score = 120 bits (132), Expect = 9e-23 Identities = 268/399 (67%), Gaps = 8/399 (2%) Strand=Plus/Plus Query 25817 ACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCCTGCTTA 25876 || || | ||| || | ||| || | |||||||| || || | ||||| || | ||| Sbjct 21513221 ACCAGCATTGAAAATCATCTTTACATTGGATGGTTTGGTGTTTTGATGAT-CCTTACTTT 21513279 Query 25877 CTCG-CAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACCGCCTGTAGATATAG 25934 | | | || ||| | ||| ||||| |||| ||||| | ||||| || ||||||| | Sbjct 21513280 ATTGACCGCAACTTC-TGTATTTATTATTGCTTTCATTRCTGCACCTCCAATAGATATTG 21513338 Query 25935 ATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATATCAGGAG 25994 |||| || ||||| || ||||| || || ||| | || |||| |||||| || | | | Sbjct 21513339 ATGGTATTCGTGAACCTGTTTCTGGATCTTTACTTTATGGAAGCAATATTATTTTTTGTG 21513398 Query 25995 CAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATCTGGGAAGCTGGCA 26054 | | | || | ||| || || || | || |||||||| || |||||||| Sbjct 21513399 CCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCTATATGGGAAGCGACTT 21513458 Query 26055 CACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTATCTTCCACTTCTTAA 26114 | | || || ||| |||||||||| || || ||| | || ||| | | ||||||||| Sbjct 21513459 CTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTAC 21513518 Query 26115 TAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACAGACTAGGAATGAGAC 26174 | || ||||| || | || | |||||||||| || || || || | | Sbjct 21513519 TTGGTGTAGCTTGCTACGTGGGTCGTGAGTGGGAACTTAGTTTTYKTCTGGGTATACGCC 21513578 Query 26175 CATGGATATTTGTTGCATATACAGC----ACCACTATCC 26209 | ||||| ||||||||||| || | |||| ||||| Sbjct 21513579 CTTGGATTGTTGTTGCATATTCARCTCTTACCATTATCC 21513617 Score = 80.6 bits (88), Expect = 8e-11 Identities = 123/170 (72%), Gaps = 8/170 (5%) Strand=Plus/Minus Query 25823 ACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCCTGCTTACTCGCA 25882 ||||| |||||||| || | |||||||| || || | | ||| |||| ||| | || Sbjct 21517486 ACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGAGGAT-CCCTACTTTATTGC- 21517429 Query 25883 GCCACTACATGT---TTTATACTTGCCTTCATCGCAGCACCGCCTGTAGATATAGATGGC 25939 |||| || | | ||||| |||| ||||| || ||||| | || |||||| ||||| Sbjct 21517428 -CCACAACTTTTGTATTTATTATTGCTTTCATTGCTGCACCTC-TG-AGATATTGATGGT 21517372 Query 25940 ATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATATC 25989 || ||||| || |||| || | ||| | || ||||||||||| || || Sbjct 21517371 ATTCGTGAACCTATTTCTGGATTTTTACTTTATGGAAACAATATTATTTC 21517322 >seq376 Length=2445099 Score = 100 bits (110), Expect = 8e-17 Identities = 133/183 (73%), Gaps = 4/183 (2%) Strand=Plus/Plus Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861 |||||| | ||| | || || ||||| |||||||| || | |||||||| || || | Sbjct 1076006 TTTTGTAACTGGATAACYAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1076065 Query 25862 ATGATACCCTGC-TTACTCGCAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCAC 25919 ||||| |||| | ||| | | | ||| | ||| ||||| |||| ||||| || |||| Sbjct 1076066 ATGAT-CCCTACTTTATTGACCKCAACTTC-TGTATTTATTATTGCTTTCATTGCTGCAC 1076123 Query 25920 CGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACA 25979 | |||||||| ||||| || | ||| || ||||| || || ||| | || |||| || Sbjct 1076124 CTYYGGTAGATATTGATGGTATTCRTGAACCTGTTTCTGGATCTTTACTTTATGGAARCA 1076183 Query 25980 ATA 25982 ||| Sbjct 1076184 ATA 1076186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146724220287624