Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq1241 154 4e-33 seq13 149 2e-31 seq376 102 2e-17 seq1185 98.7 3e-16 seq14 98.7 3e-16 >seq1241 Length=4265459 Score = 154 bits (170), Expect = 4e-33 Identities = 249/357 (70%), Gaps = 6/357 (2%) Strand=Plus/Plus Query 36560 TGAATAAGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCG 36619 |||||| || ||| ||||| || | ||||| || | | ||||||||||||| | || Sbjct 4250374 TGAATATGCAACAACAATCCAAGGGCGTATACCCAGACGAAAACTAAGTTCCCACTCACG 4250433 Query 36620 TCCCA---AGTAAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCC 36676 |||| || ||||| | ||||| | ||||| | ||||| || | ||| || || Sbjct 4250434 ACCCACGTAGCAAGCT---ACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACC 4250490 Query 36677 TCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACC 36736 || || |||||||| || || | | | |||||||| || ||||| ||||| | ||| Sbjct 4250491 ACCATTGTATAACCATTCATCAACAGAAGTCGCTTCCCATATAGGGTAAAAGTGCAAACC 4250550 Query 36737 GATTGCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGC 36796 || || || | || | || || | | | || || ||| ||||||| ||||| | Sbjct 4250551 TATAGCTGCAGAAGTAGGAATAATGGCACAAAAAATAATATTGCTTCCATAAAGTAAAGA 4250610 Query 36797 TCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAAT 36856 ||| || ||||| |||||||||||||| ||||| | ||||| ||||||| || ||||| Sbjct 4250611 TCCAGAAACAGGTTCACGAATACCATCAATATCTATTGGAGGTGCAGCAATGAAAGCAAT 4250670 Query 36857 TAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCC 36913 | |||| | | ||| || || | | | ||||||| | || |||||||| || Sbjct 4250671 AATAAATACAGAAGTTGCGGTCAATAAAGTAAGGATCATCAAAACACCAAACCATCC 4250727 >seq13 Length=34719086 Score = 149 bits (164), Expect = 2e-31 Identities = 248/359 (69%), Gaps = 6/359 (2%) Strand=Plus/Minus Query 36558 GCTGAATAAGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGT 36617 | |||||| || ||| ||||| || | ||||| || | ||||||||||||| | Sbjct 21513603 GYTGAATATGCAACAACAATCCAAGGGCGTATACCCAGAMRAAAACTAAGTTCCCACTCA 21513544 Query 36618 CGTCCCAAGTA---AGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGT 36674 || |||| ||| |||| | ||||| | ||||| | ||||| || | ||| || Sbjct 21513543 CGACCCACGTAGCAAGCT---ACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGA 21513487 Query 36675 CCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGA 36734 || || || |||||||| || || | | | |||||||| || ||||| ||||| | | Sbjct 21513486 CCACCATTGTATAACCATTCATCAACAGAAGTCGCTTCCCATATAGGGTAAAAGTGCAAA 21513427 Query 36735 CCGATTGCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAAT 36794 || || || || | || | || || | | | || || ||| ||||||| ||||| Sbjct 21513426 CCTATAGCTGCAGAAGTAGGAATAATGGCACAAAAAATAATATTGCTTCCATAAAGTAAA 21513367 Query 36795 GCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCA 36854 | ||| || ||||| |||||||||||||| ||||| | ||||| |||| || || ||| Sbjct 21513366 GATCCAGAAACAGGTTCACGAATACCATCAATATCTATTGGAGGTGCAGYAATGAAAGCA 21513307 Query 36855 ATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCC 36913 || | |||| | | ||| || || | | | ||||||| | || |||||||| || Sbjct 21513306 ATAATAAATACAGAAGTTGCGGTCAATAAAGTAAGGATCATCAAAACACCAAACCATCC 21513248 >seq376 Length=2445099 Score = 102 bits (112), Expect = 2e-17 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 36777 TTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGA 36836 ||| ||||||| ||||| | ||| || ||||| ||| |||||||||| ||||| || | Sbjct 1076184 TTGYTTCCATAAAGTAAAGATCCAGAAACAGGTTCAYGAATACCATCAATATCTACCRRA 1076125 Query 36837 GGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATT 36896 || ||||||| || ||||| | |||| | | || || || | | ||||||||| Sbjct 1076124 GGTGCAGCAATGAAAGCAATAATAAATACAGAAGTTGMGGTCAATAAAGTAGGGATCATC 1076065 Query 36897 AGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAGTCACATAA 36955 | || |||||||| || | || || ||||| | || || || | ||||| ||| || Sbjct 1076064 AAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTRGTTATCCAGTTACAAAA 1076006 >seq1185 Length=2433339 Score = 98.7 bits (108), Expect = 3e-16 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 36777 TTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGA 36836 ||| ||||||| ||||| | ||| || ||||| ||| |||||||||| ||||| || | Sbjct 1074561 TTGYTTCCATAAAGTAAAGATCCAGAAACAGGTTCAYGAATACCATCAATATCTACCRAA 1074502 Query 36837 GGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATT 36896 || ||||||| || ||||| | |||| | | || || || | | ||||||||| Sbjct 1074501 GGTGCAGCAATGAAAGCAATAATAAATACAGAAGTTGAGGTCAATAAAGTAGGGATCATC 1074442 Query 36897 AGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAGTCACATAA 36955 | || |||||||| || | || || ||||| | || || || | ||||| ||| || Sbjct 1074441 AAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTRGTTATCCAGTTACAAAA 1074383 >seq14 Length=29158859 Score = 98.7 bits (108), Expect = 3e-16 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 36777 TTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGA 36836 ||| ||||||| ||||| | ||| || ||||| ||| |||||||||| ||||| || | Sbjct 26472374 TTGYTTCCATAAAGTAAAGATCCAGAAACAGGTTCAYGAATACCATCAATATCTACCRAA 26472315 Query 36837 GGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATT 36896 || ||||||| || ||||| | |||| | | || || || | | ||||||||| Sbjct 26472314 GGTGCAGCAATGAAAGCAATAATAAATACAGAAGTTGAGGTCAATAAAGTAGGGATCATC 26472255 Query 36897 AGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAGTCACATAA 36955 | || |||||||| || | || || ||||| | || || || | ||||| ||| || Sbjct 26472254 AAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTRGTTATCCAGTTACAAAA 26472196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150452164905854