Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq1241 152 2e-32 seq13 147 7e-31 seq376 109 2e-19 seq1185 105 2e-18 seq14 105 2e-18 seq629 89.7 2e-13 seq8 89.7 2e-13 >seq1241 Length=4265459 Score = 152 bits (168), Expect = 2e-32 Identities = 246/354 (69%), Gaps = 0/354 (0%) Strand=Plus/Plus Query 5782 TGAATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCG 5841 ||||||||| || |||||| || || || || | | ||||||||||||| | || Sbjct 4250374 TGAATATGCAACAACAATCCAAGGGCGTATACCCAGACGAAAACTAAGTTCCCACTCACG 4250433 Query 5842 TCCCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCC 5901 |||| ||| || | ||||| | |||||| | || | || | || || || || Sbjct 4250434 ACCCACGTAGCAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACC 4250493 Query 5902 ATTGTAAAGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAAT 5961 |||||| | ||||||||| | | | |||||||| || || || ||||| || || || Sbjct 4250494 ATTGTATAACCATTCATCAACAGAAGTCGCTTCCCATATAGGGTAAAAGTGCAAACCTAT 4250553 Query 5962 TGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCC 6021 || || | || | || ||| | | || || ||| ||||||| |||| |||||| Sbjct 4250554 AGCTGCAGAAGTAGGAATAATGGCACAAAAAATAATATTGCTTCCATAAAGTAAAGATCC 4250613 Query 6022 TGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATAT 6081 | || |||||||| || || || || || | ||| |||||||| | ||| || | || Sbjct 4250614 AGAAACAGGTTCACGAATACCATCAATATCTATTGGAGGTGCAGCAATGAAAGCAATAAT 4250673 Query 6082 AAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCC 6135 |||| ||| ||||||||| || | | | ||||| || ||||||||||| || Sbjct 4250674 AAATACAGAAGTTGCGGTCAATAAAGTAAGGATCATCAAAACACCAAACCATCC 4250727 >seq13 Length=34719086 Score = 147 bits (162), Expect = 7e-31 Identities = 245/356 (69%), Gaps = 0/356 (0%) Strand=Plus/Minus Query 5780 GCTGAATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGG 5839 | ||||||||| || |||||| || || || || | ||||||||||||| | Sbjct 21513603 GYTGAATATGCAACAACAATCCAAGGGCGTATACCCAGAMRAAAACTAAGTTCCCACTCA 21513544 Query 5840 CGTCCCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCT 5899 || |||| ||| || | ||||| | |||||| | || | || | || || || Sbjct 21513543 CGACCCACGTAGCAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCA 21513484 Query 5900 CCATTGTAAAGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCA 5959 |||||||| | ||||||||| | | | |||||||| || || || ||||| || || Sbjct 21513483 CCATTGTATAACCATTCATCAACAGAAGTCGCTTCCCATATAGGGTAAAAGTGCAAACCT 21513424 Query 5960 ATTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGAT 6019 || || || | || | || ||| | | || || ||| ||||||| |||| |||| Sbjct 21513423 ATAGCTGCAGAAGTAGGAATAATGGCACAAAAAATAATATTGCTTCCATAAAGTAAAGAT 21513364 Query 6020 CCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAAT 6079 || | || |||||||| || || || || || | ||| ||||||| | ||| || | Sbjct 21513363 CCAGAAACAGGTTCACGAATACCATCAATATCTATTGGAGGTGCAGYAATGAAAGCAATA 21513304 Query 6080 ATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCC 6135 |||||| ||| ||||||||| || | | | ||||| || ||||||||||| || Sbjct 21513303 ATAAATACAGAAGTTGCGGTCAATAAAGTAAGGATCATCAAAACACCAAACCATCC 21513248 >seq376 Length=2445099 Score = 109 bits (120), Expect = 2e-19 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 5999 TTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGG 6058 ||| ||||||| |||| |||||| | || |||||| | || || || || || || Sbjct 1076184 TTGYTTCCATAAAGTAAAGATCCAGAAACAGGTTCAYGAATACCATCAATATCTACCRRA 1076125 Query 6059 GGTGCAGCTACGAATGCTAATATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATT 6118 |||||||| | ||| || | |||||| ||| ||||| ||| || | | || ||||| Sbjct 1076124 GGTGCAGCAATGAAAGCAATAATAAATACAGAAGTTGMGGTCAATAAAGTAGGGATCATC 1076065 Query 6119 AAGACACCAAACCACCCCACATAGAGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 || ||||||||||| || | || || ||||| | ||||| || | ||||| ||| || Sbjct 1076064 AAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTRGTTATCCAGTTACAAAA 1076006 >seq1185 Length=2433339 Score = 105 bits (116), Expect = 2e-18 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 5999 TTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGG 6058 ||| ||||||| |||| |||||| | || |||||| | || || || || || || Sbjct 1074561 TTGYTTCCATAAAGTAAAGATCCAGAAACAGGTTCAYGAATACCATCAATATCTACCRAA 1074502 Query 6059 GGTGCAGCTACGAATGCTAATATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATT 6118 |||||||| | ||| || | |||||| ||| ||||| ||| || | | || ||||| Sbjct 1074501 GGTGCAGCAATGAAAGCAATAATAAATACAGAAGTTGAGGTCAATAAAGTAGGGATCATC 1074442 Query 6119 AAGACACCAAACCACCCCACATAGAGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 || ||||||||||| || | || || ||||| | ||||| || | ||||| ||| || Sbjct 1074441 AAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTRGTTATCCAGTTACAAAA 1074383 >seq14 Length=29158859 Score = 105 bits (116), Expect = 2e-18 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 5999 TTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGG 6058 ||| ||||||| |||| |||||| | || |||||| | || || || || || || Sbjct 26472374 TTGYTTCCATAAAGTAAAGATCCAGAAACAGGTTCAYGAATACCATCAATATCTACCRAA 26472315 Query 6059 GGTGCAGCTACGAATGCTAATATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATT 6118 |||||||| | ||| || | |||||| ||| ||||| ||| || | | || ||||| Sbjct 26472314 GGTGCAGCAATGAAAGCAATAATAAATACAGAAGTTGAGGTCAATAAAGTAGGGATCATC 26472255 Query 6119 AAGACACCAAACCACCCCACATAGAGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 || ||||||||||| || | || || ||||| | ||||| || | ||||| ||| || Sbjct 26472254 AAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTRGTTATCCAGTTACAAAA 26472196 >seq629 Length=2291386 Score = 89.7 bits (98), Expect = 2e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 5405 AAGAAATGTAAACTACGGCTATTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAG 5464 ||||| |||||| | | ||||| || |||||||| |||||||| | || ||||| Sbjct 2029912 AAGAAGTGTAAAGAATGAGAGTTGTTCAAACTAGCATATTGGAAGATCAATCAGCCAAAA 2029971 Query 5465 TAGCCATGAGCCGCAACAATGTTATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAG 5524 || ||||||||||| || || || || |||||||||||||| || ||| | || || || Sbjct 2029972 TAACCATGAGCCGCTACGATATTGTAGGTTTCTTCCTCTTGACCAAATCTGTAACCGTAA 2030031 Query 5525 TT 5526 || Sbjct 2030032 TT 2030033 >seq8 Length=29603939 Score = 89.7 bits (98), Expect = 2e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 5405 AAGAAATGTAAACTACGGCTATTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAG 5464 ||||| |||||| | | ||||| || |||||||| |||||||| | || ||||| Sbjct 4092039 AAGAAGTGTAAAGAATGAGAGTTGTTCAAACTAGCATATTGGAAGATCAATCAGCCAAAA 4091980 Query 5465 TAGCCATGAGCCGCAACAATGTTATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAG 5524 || ||||||||||| || || || || |||||||||||||| || ||| | || || || Sbjct 4091979 TAACCATGAGCCGCTACGATATTGTAGGTTTCTTCCTCTTGACCAAATCTGTAACCGTAA 4091920 Query 5525 TT 5526 || Sbjct 4091919 TT 4091918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152647332294786