Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq1241 140 1e-28 seq13 136 1e-27 seq376 102 2e-17 seq1185 98.7 3e-16 seq14 98.7 3e-16 >seq1241 Length=4265459 Score = 140 bits (154), Expect = 1e-28 Identities = 246/357 (69%), Gaps = 6/357 (2%) Strand=Plus/Plus Query 26040 TGAATAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCG 26099 |||||| || ||| ||||| || | || || || | | ||||||||||||| | || Sbjct 4250374 TGAATATGCAACAACAATCCAAGGGCGTATACCCAGACGAAAACTAAGTTCCCACTCACG 4250433 Query 26100 TCCCAAGTA---AGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCC 26156 |||| ||| |||| | || | | ||||| | ||||| || | ||| || || Sbjct 4250434 ACCCACGTAGCAAGCT---ACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACC 4250490 Query 26157 ACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACC 26216 ||| || || ||||| || || | | | |||||||| || ||||| ||||| | ||| Sbjct 4250491 ACCATTGTATAACCATTCATCAACAGAAGTCGCTTCCCATATAGGGTAAAAGTGCAAACC 4250550 Query 26217 GATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGC 26276 || || ||| | || | || || | | || || ||| ||||||| ||||| | Sbjct 4250551 TATAGCTGCAGAAGTAGGAATAATGGCACAAAAAATAATATTGCTTCCATAAAGTAAAGA 4250610 Query 26277 TCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAAT 26336 ||| || ||||| |||||||||||||| ||||| | ||||| ||||||| || ||||| Sbjct 4250611 TCCAGAAACAGGTTCACGAATACCATCAATATCTATTGGAGGTGCAGCAATGAAAGCAAT 4250670 Query 26337 TAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCC 26393 | |||| | | ||| || || | | | ||||||| | || |||||||| || Sbjct 4250671 AATAAATACAGAAGTTGCGGTCAATAAAGTAAGGATCATCAAAACACCAAACCATCC 4250727 >seq13 Length=34719086 Score = 136 bits (150), Expect = 1e-27 Identities = 245/359 (68%), Gaps = 6/359 (2%) Strand=Plus/Minus Query 26038 GCTGAATAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGT 26097 | |||||| || ||| ||||| || | || || || | ||||||||||||| | Sbjct 21513603 GYTGAATATGCAACAACAATCCAAGGGCGTATACCCAGAMRAAAACTAAGTTCCCACTCA 21513544 Query 26098 CGTCCCAAGTA---AGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGT 26154 || |||| ||| |||| | || | | ||||| | ||||| || | ||| || Sbjct 21513543 CGACCCACGTAGCAAGCT---ACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGA 21513487 Query 26155 CCACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGA 26214 ||||| || || ||||| || || | | | |||||||| || ||||| ||||| | | Sbjct 21513486 CCACCATTGTATAACCATTCATCAACAGAAGTCGCTTCCCATATAGGGTAAAAGTGCAAA 21513427 Query 26215 CCGATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAAT 26274 || || || ||| | || | || || | | || || ||| ||||||| ||||| Sbjct 21513426 CCTATAGCTGCAGAAGTAGGAATAATGGCACAAAAAATAATATTGCTTCCATAAAGTAAA 21513367 Query 26275 GCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCA 26334 | ||| || ||||| |||||||||||||| ||||| | ||||| |||| || || ||| Sbjct 21513366 GATCCAGAAACAGGTTCACGAATACCATCAATATCTATTGGAGGTGCAGYAATGAAAGCA 21513307 Query 26335 ATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCC 26393 || | |||| | | ||| || || | | | ||||||| | || |||||||| || Sbjct 21513306 ATAATAAATACAGAAGTTGCGGTCAATAAAGTAAGGATCATCAAAACACCAAACCATCC 21513248 >seq376 Length=2445099 Score = 102 bits (112), Expect = 2e-17 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 26257 TTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGA 26316 ||| ||||||| ||||| | ||| || ||||| ||| |||||||||| ||||| || | Sbjct 1076184 TTGYTTCCATAAAGTAAAGATCCAGAAACAGGTTCAYGAATACCATCAATATCTACCRRA 1076125 Query 26317 GGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATT 26376 || ||||||| || ||||| | |||| | | || || || | | ||||||||| Sbjct 1076124 GGTGCAGCAATGAAAGCAATAATAAATACAGAAGTTGMGGTCAATAAAGTAGGGATCATC 1076065 Query 26377 AGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAGTCACATAA 26435 | || |||||||| || | || || ||||| | || || || | ||||| ||| || Sbjct 1076064 AAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTRGTTATCCAGTTACAAAA 1076006 >seq1185 Length=2433339 Score = 98.7 bits (108), Expect = 3e-16 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 26257 TTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGA 26316 ||| ||||||| ||||| | ||| || ||||| ||| |||||||||| ||||| || | Sbjct 1074561 TTGYTTCCATAAAGTAAAGATCCAGAAACAGGTTCAYGAATACCATCAATATCTACCRAA 1074502 Query 26317 GGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATT 26376 || ||||||| || ||||| | |||| | | || || || | | ||||||||| Sbjct 1074501 GGTGCAGCAATGAAAGCAATAATAAATACAGAAGTTGAGGTCAATAAAGTAGGGATCATC 1074442 Query 26377 AGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAGTCACATAA 26435 | || |||||||| || | || || ||||| | || || || | ||||| ||| || Sbjct 1074441 AAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTRGTTATCCAGTTACAAAA 1074383 >seq14 Length=29158859 Score = 98.7 bits (108), Expect = 3e-16 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 26257 TTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGA 26316 ||| ||||||| ||||| | ||| || ||||| ||| |||||||||| ||||| || | Sbjct 26472374 TTGYTTCCATAAAGTAAAGATCCAGAAACAGGTTCAYGAATACCATCAATATCTACCRAA 26472315 Query 26317 GGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATT 26376 || ||||||| || ||||| | |||| | | || || || | | ||||||||| Sbjct 26472314 GGTGCAGCAATGAAAGCAATAATAAATACAGAAGTTGAGGTCAATAAAGTAGGGATCATC 26472255 Query 26377 AGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAGTCACATAA 26435 | || |||||||| || | || || ||||| | || || || | ||||| ||| || Sbjct 26472254 AAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTRGTTATCCAGTTACAAAA 26472196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151991342040076