Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq1241 168 7e-37 seq13 161 1e-34 seq629 95.1 1e-14 seq8 95.1 1e-14 >seq1241 Length=4265459 Score = 168 bits (186), Expect = 7e-37 Identities = 255/357 (71%), Gaps = 8/357 (2%) Strand=Plus/Minus Query 162541 GGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCG-CAGCAGCAACTTGCTTCATCAT 162599 || ||||| ||||| |||||||||| || ||| | | | ||| | || || || || Sbjct 4250727 GGATGGTTTGGTGTTTTGATGATCC-TTACTTTATTGACCGCAACTTCTGTATTTATTAT 4250669 Query 162600 TGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTC 162659 ||| |||||||| ||||||||| | ||||| |||||||| | ||||||||| | || || Sbjct 4250668 TGCTTTCATTGCTGCACCTCCAATAGATATTGATGGTATTCGTGAACCTGTTTCTGGATC 4250609 Query 162660 ACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGG 162719 | || ||||| | ||| || || | | |||| | |||||| ||| ||||| || Sbjct 4250608 TTTACTTTATGGAAGCAATATTATTTTTTGTGCCATTATTCCTACTTCTGCAGCTATAGG 4250549 Query 162720 TCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGG 162779 | | ||||| || ||||| |||||||| | || ||||||| ||||| || |||||||| Sbjct 4250548 TTTGCACTTTTACCCTATATGGGAAGCGACTTCTGTTGATGAATGGTTATACAATGGTGG 4250489 Query 162780 ACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACT--GTGG-TCG 162836 |||| | || | || | |||||| | | || | ||| | || |||| ||| Sbjct 4250488 TCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT---AGCTTGCTACGTGGGTCG 4250432 Query 162837 TCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTC 162893 | ||||||||||| || || | ||||| || |||||||| ||||||||| || Sbjct 4250431 TGAGTGGGAACTTAGTTTTCGTCTGGGTATACGCCCTTGGATTGTTGTTGCATATTC 4250375 >seq13 Length=34719086 Score = 161 bits (178), Expect = 1e-34 Identities = 252/357 (71%), Gaps = 8/357 (2%) Strand=Plus/Plus Query 162541 GGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCG-CAGCAGCAACTTGCTTCATCAT 162599 || ||||| ||||| |||||||||| || ||| | | | ||| | || || || || Sbjct 21513248 GGATGGTTTGGTGTTTTGATGATCC-TTACTTTATTGACCGCAACTTCTGTATTTATTAT 21513306 Query 162600 TGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTC 162659 ||| |||||| | ||||||||| | ||||| |||||||| | ||||||||| | || || Sbjct 21513307 TGCTTTCATTRCTGCACCTCCAATAGATATTGATGGTATTCGTGAACCTGTTTCTGGATC 21513366 Query 162660 ACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGG 162719 | || ||||| | ||| || || | | |||| | |||||| ||| ||||| || Sbjct 21513367 TTTACTTTATGGAAGCAATATTATTTTTTGTGCCATTATTCCTACTTCTGCAGCTATAGG 21513426 Query 162720 TCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGG 162779 | | ||||| || ||||| |||||||| | || ||||||| ||||| || |||||||| Sbjct 21513427 TTTGCACTTTTACCCTATATGGGAAGCGACTTCTGTTGATGAATGGTTATACAATGGTGG 21513486 Query 162780 ACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACT--GTGG-TCG 162836 |||| | || | || | |||||| | | || | ||| | || |||| ||| Sbjct 21513487 TCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT---AGCTTGCTACGTGGGTCG 21513543 Query 162837 TCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTC 162893 | ||||||||||| || | ||||| || |||||||| ||||||||| || Sbjct 21513544 TGAGTGGGAACTTAGTTTTYKTCTGGGTATACGCCCTTGGATTGTTGTTGCATATTC 21513600 >seq629 Length=2291386 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 163150 AACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGA 163209 || |||||||| | || || ||||| ||||| || ||||| || || || |||||||| Sbjct 2030033 AATTACGGTTACAGATTTGGTCAAGAGGAAGAAACCTACAATATCGTAGCGGCTCATGGT 2029974 Query 163210 TACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTC 163269 || ||||| | ||||||||||| ||||| ||| |||||||| | ||| | |||||| Sbjct 2029973 TATTTTGGCTGATTGATCTTCCAATATGCTAGTTTGAACAACTCTCATTCTTTACACTTC 2029914 Query 163270 TT 163271 || Sbjct 2029913 TT 2029912 >seq8 Length=29603939 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 163150 AACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGA 163209 || |||||||| | || || ||||| ||||| || ||||| || || || |||||||| Sbjct 4091918 AATTACGGTTACAGATTTGGTCAAGAGGAAGAAACCTACAATATCGTAGCGGCTCATGGT 4091977 Query 163210 TACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTC 163269 || ||||| | ||||||||||| ||||| ||| |||||||| | ||| | |||||| Sbjct 4091978 TATTTTGGCTGATTGATCTTCCAATATGCTAGTTTGAACAACTCTCATTCTTTACACTTC 4092037 Query 163270 TT 163271 || Sbjct 4092038 TT 4092039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553076151136440