Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq9 246 3e-60 seq672 232 8e-56 seq11 134 2e-26 seq12 113 5e-20 seq8 93.3 5e-14 seq629 86.0 7e-12 >seq9 Length=33717675 Score = 246 bits (272), Expect = 3e-60 Identities = 442/639 (69%), Gaps = 6/639 (1%) Strand=Plus/Plus Query 164734 GTTGGTACACCCATGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTCACAGCAG 164793 ||||||| |||||| | | || ||||||| | ||||| ||||||| | | | | Sbjct 26714187 GTTGGTATACCCATAGATTAGCAAGTTCCTATTTGGAAGGCTCTAACTTCTTAAGTGATG 26714246 Query 164794 CTGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCT-ACTTTGGGGTCCTGAG 164852 | || || || || ||| || | | | || | |||| || | ||| ||||||||||| Sbjct 26714247 CAGTTTCCACTCCGGCTAATAGTTTAGCGCACT-TCTTGTTGTTACTATGGGGTCCTGAA 26714305 Query 164853 TCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTC 164912 | || || |||| || ||||| ||| | || | |||| || ||| || || || Sbjct 26714306 GCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCAGTCTATAGACTTTTGTTGCACTA 26714365 Query 164913 CACGGTGCCTTCGCCCTAATTGGTTTCATGCTCCGCCAGTTTGAGCTGGCACG-TCTCAT 164971 || || || |||| ||||| ||||| ||| | || || |||||||| || || ||| | Sbjct 26714366 CATGGCGCTTTCGAACTAATAGGTTT-ATGTTACGTCAATTTGAGCTTGCTCGATCTG-T 26714423 Query 164972 TGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGT 165031 || | | |||| ||||| ||||| ||||| ||||| ||||||||||| || || Sbjct 26714424 TGAATTGTGACCTTGTAATGCAATTGCATTCTCCGGTCCAATTGCTGTTTT-GTTTCTGT 26714482 Query 165032 CTTCCTTATCTACCCACTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGC 165091 ||||| || || || | |||||||| |||||||| || || || ||||| || || Sbjct 26714483 ATTCCTAATTTATCCGTTAGGTCAGTCTAGTTGGTTCTTTGCACCTAGTTTTGGTGTAGC 26714542 Query 165092 AGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTCCACAACTGGACCCTCAACCCCTT 165151 ||| || ||| ||||| | | || | || || || || || ||||| || ||||| || Sbjct 26714543 AGCTATATTTTGATTCATCCTCTTTTTYCAGGGGTTTCATAATTGGACACTAAACCCATT 26714602 Query 165152 CCATATGATGGGTGTTGCAGGTATCTTGGGAGGAGCATTGCTATCTGCTATTCATGGAGT 165211 ||||||||||| |||| || | ||||| | || ||| ||| |||||||| || | Sbjct 26714603 TCATATGATGGGAGTTGTTGGGGTGTTGGGCGCTGCTTTGTTATGCGCTATTCACGGTGC 26714662 Query 165212 CACAGTTGAAAATACATTATACGAGGATGGAGAGCAGGCAAATACCTTTAAGGCGTTTGA 165271 | | ||||||| |||| | ||||| || |||||||| || | || | Sbjct 26714663 TATCATAAAAAATACTTTATTTGGAGATGGTGATGGTGCAAATACATTCCGTGGTTTCAA 26714722 Query 165272 TTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGAT 165331 | || || | ||||| |||||||| |||||||| | |||| ||| ||||| || || Sbjct 26714723 CCCAACTCAAGTTGAAGAAACTTATTCAATGGTCACCACTAACCRCTTTTGGTCCCAAAT 26714782 Query 165332 CTTCGGCATTGCGTTTTCTAACAAGCGGTGGCTTCATTT 165370 ||| | |||| ||||| || || || ||| | ||||| Sbjct 26714783 CTTTAGGGTTGCTTTTTCCAATAAACGTTGGTTACATTT 26714821 >seq672 Length=1945142 Score = 232 bits (256), Expect = 8e-56 Identities = 508/756 (67%), Gaps = 37/756 (5%) Strand=Plus/Minus Query 164619 GATGACTGGCTTA--AACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGATTACTACTTC 164676 ||||||||| ||| || || | ||||| |||||||| || |||||| | | |||| Sbjct 1649946 GATGACTGG-TTACGAAGGA-ACCGCTTCGTTTTTGTAGGTTGGTCTAGCCAATTACTCT 1649889 Query 164677 TTCCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTT 164736 |||| ||| ||| | || | || |||||| | || | ||| | || Sbjct 1649888 TTCCTTGTGCCTATTTYGCTTTAGGGGGTTGGTT----GGAA-----TTTA-----ATTT 1649843 Query 164737 GGTACACCCATGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTCACAGCAGCTG 164796 |||| |||||| | | || ||||||| | ||||| |||||| | | | || | Sbjct 1649842 GGTATACCCATAGATTAGCAAGTTCCTATTTGGAAGGCTTTAACTTCTTAAGTGATGCAG 1649783 Query 164797 TCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCT-ACTTTGGGGTCCTGAGTCT 164855 | || || || ||| || | | | || | |||| || | ||| ||||||||||| | Sbjct 1649782 TTTCCACTCCGGCTAATAGTTTAGCGCACT-TCTTGTTGTTACTATGGGGTCCTGAAGCA 1649724 Query 164856 CAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCAC 164915 || || |||| || ||||| ||| | || | |||| || ||| || || || || Sbjct 1649723 CAAGGAGATTTTACTCGTTGGTGTCAATTAGGCAGTCTATAGACTTTTGTTGCACTACAT 1649664 Query 164916 GGTGCCTTCGCCCTAATTGGTTTCATGCTCCGCCAGTTTGAGCTGGCACG-TCTCATTGG 164974 || || |||| ||||| ||||| ||| | || || |||||||| || || ||| || Sbjct 1649663 GGCGCTTTCGGACTAATAGGTTT-ATGTTACGTCAATTTGAGCTTGCTCGATCTG-TTSA 1649606 Query 164975 TATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTT 165034 | | |||| ||||| ||||| ||||| ||||| |||||||||||||| || || Sbjct 1649605 ATTGTGACCTTRTAATGCAATTGCATTCTCCGGTCCAATTGCTGTTTTTGTTTCTGTATT 1649546 Query 165035 CCTTATCTACCCACTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGC 165094 ||| || || | | |||||||| ||||||| || || || ||||| || ||||| Sbjct 1649545 CCTAATTTATCYRTTAGGTCAGTCTRGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCAGC 1649486 Query 165095 AATCTTTAGATTCCTGTTGTTCCTTCAAGGATTCCACAACTGGACCCTCAACCCCTTCCA 165154 || ||| ||||| | | || | || || || || || ||||| || ||||| || || Sbjct 1649485 TATATTTTGATTCATCCTCTTTTTYCAGGGGTTTCATAATTGGACACTAAACCCATTTCA 1649426 Query 165155 TATGATGGGTGTTGCAGGTATCTTGGGAGGAGCATTGCTATCTGCTATTCATGGAGTCAC 165214 ||||||||| |||| || | ||||| | || || ||| |||||||| || | | Sbjct 1649425 TATGATGGGAGTTGTTGGGGTGTTGGGCGCTGCTYTGTTATGCGCTATTCACGGTGCTAT 1649366 Query 165215 AGTTGAAAATACATTATACGAGGATGGAGAGCAGGCAAATACCTTTAAGGCGTTTGATTC 165274 | ||||||| |||| |||||| || |||| || |||| | | Sbjct 1649365 CATARAAAATACTTTAT------TTGGAGA-TGGGGAAATTCC-------GGTTTAACCC 1649320 Query 165275 GACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTT 165334 || || | ||||| |||||||| |||||||| | |||| ||| ||||| || ||||| Sbjct 1649319 AACTCAAGTTGAAGAAACTTATTCAATGGTCACCACTAACCRCTTTTGGTCCCAAATCTT 1649260 Query 165335 CGGCATTGCGTTTTCTAACAAGCGGTGGCTTCATTT 165370 | |||| ||||| || || || ||| | ||||| Sbjct 1649259 TAGGGTTGCTTTTTCCAATAAACGTTGGTTACATTT 1649224 >seq11 Length=35299535 Score = 134 bits (148), Expect = 2e-26 Identities = 211/302 (70%), Gaps = 0/302 (0%) Strand=Plus/Minus Query 165323 GTCGCAGATCTTCGGCATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTT 165382 ||| || ||||| || |||| |||| || || | ||| | ||||| | ||||| || Sbjct 68910 GTCCCACATCTTTGGGGTTGCTGTTTCCAATAAACATTGGTTACATTTCCTTATGTTATT 68851 Query 165383 TGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCT 165442 ||| | || | ||| | |||| || ||| | | ||||| || | ||||| Sbjct 68850 TGTACTAGTAACCGGTTTATGGATGAGTGCTCTTGAAGTAGTGGGTCTGGCCTTGAACCT 68791 Query 165443 TCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGAC 165502 |||| || ||||| || |||| | ||| | || ||||||||| ||||||||||| Sbjct 68790 ACGTGTCTATGATTTTGTTTCTCAGAAAATCCATGTAGTAGAAGATCCTGAATTTGAGAC 68731 Query 165503 CTTCTACACCAAAAACATCCTATTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGA 165562 ||||| ||||| || || || || |||||||| ||| ||||||| ||| || || Sbjct 68730 TTTCTAAACCAACAATATTCTCTTAAATGAAGGTATACATGCTTGGATGGTGGCTCAAGA 68671 Query 165563 TCAACCCCATGAAAACTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTA 165622 ||| || |||||||| |||| ||||| || || || || || | || ||||| ||||| Sbjct 68670 TCAGCCTTATGAAAACCTTATATTCCCTGAGGAGGTTTTACCCCGTGGAAACGCTCTTTA 68611 Query 165623 AT 165624 || Sbjct 68610 AT 68609 >seq12 Length=31678690 Score = 113 bits (124), Expect = 5e-20 Identities = 103/129 (80%), Gaps = 1/129 (1%) Strand=Plus/Minus Query 165477 GCAGCAGAAGATCCAGAATTT-GAGACCTTCTACACCAAAAACATCCTATTGAATGAAGG 165535 ||| | |||||||| |||||| ||||| |||||||||||||| || || || | |||||| Sbjct 15529651 GCAACGGAAGATCCTGAATTTTGAGACTTTCTACACCAAAAATATTCTCTTAAGTGAAGG 15529592 Query 165536 ACTACGTGCTTGGTTGGCACCTGCTGATCAACCCCATGAAAACTTTATCTTCCCAGAAGA 165595 | | ||||||| ||||| || |||||||| ||||||||| |||| ||||| ||||| Sbjct 15529591 TATTCATGCTTGGATGGCARCTTAAGATCAACCTCATGAAAACCTTATATTCCCTGAAGA 15529532 Query 165596 AGTATTGCC 165604 || || || Sbjct 15529531 GGTTTTACC 15529523 Score = 109 bits (120), Expect = 6e-19 Identities = 97/120 (81%), Gaps = 1/120 (1%) Strand=Plus/Minus Query 165477 GCAGCAGAAGATCCAGAATTT-GAGACCTTCTACACCAAAAACATCCTATTGAATGAAGG 165535 ||| | |||||||| |||||| ||||| |||||||||||||| || || || | |||||| Sbjct 15589922 GCAACGGAAGATCCTGAATTTTGAGACTTTCTACACCAAAAATATTCTCTTAAGTGAAGG 15589863 Query 165536 ACTACGTGCTTGGTTGGCACCTGCTGATCAACCCCATGAAAACTTTATCTTCCCAGAAGA 165595 | | ||||||| ||||| || |||||||| ||||||||| |||| ||||| ||||| Sbjct 15589862 TATTCATGCTTGGATGGCARCTTAAGATCAACCTCATGAAAACCTTATATTCCCTGAAGA 15589803 >seq8 Length=29603939 Score = 93.3 bits (102), Expect = 5e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 164054 GAGGATCAATACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTACTCTTGT 164113 ||||| ||||||||| ||||| || || || |||||| |||| | ||||| || Sbjct 28502934 GAGGACGTATACATTCTCGACGCGGCGGAGGAGGCAGGAATTGACCTGCCCTACTCCTGC 28502993 Query 164114 CGTGCTGGTGCTTGCTCCTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAGT 164173 | || || |||||||||| || || || || |||| ||| | ||| |||||| Sbjct 28502994 AGGGCAGGGTCTTGCTCCTCGTGCGCCGGCAAGGTTGTGAGTGGGAGTGTGGATCAGTCG 28503053 Query 164174 GATCAGTCATTCCTAGACGATGATCAGATTGCAGCAGGATTCGTGCTTACGTGTGTAGCA 164233 || ||| || || || ||||||||||||| | ||||| ||||| || || || || Sbjct 28503054 GACCAGAGCTTTCTGGATGATGATCAGATTGGCGGTGGATTTGTGCTCACCTGCGTGGCG 28503113 Query 164234 TATCCAACATCTGA 164247 ||||| | ||||| Sbjct 28503114 TATCCGGCGTCTGA 28503127 Score = 86.0 bits (94), Expect = 7e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 163543 AACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGC 163602 || || ||||||| ||||||||||| ||||| || ||||| ||||| || || ||||| Sbjct 4091918 AATTACGGTTACAGATTTGGTCAAGAGGAAGAAACCTACAATATCGTAGCGGCTCATGGT 4091977 Query 163603 TACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAAC 163644 || || || | ||||||||||||||||| || |||||| Sbjct 4091978 TATTTTGGCTGATTGATCTTCCAATATGCTAGTTTGAACAAC 4092019 >seq629 Length=2291386 Score = 86.0 bits (94), Expect = 7e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 163543 AACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGC 163602 || || ||||||| ||||||||||| ||||| || ||||| ||||| || || ||||| Sbjct 2030033 AATTACGGTTACAGATTTGGTCAAGAGGAAGAAACCTACAATATCGTAGCGGCTCATGGT 2029974 Query 163603 TACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAAC 163644 || || || | ||||||||||||||||| || |||||| Sbjct 2029973 TATTTTGGCTGATTGATCTTCCAATATGCTAGTTTGAACAAC 2029932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563200792809880