Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1241 188 1e-42 seq9 179 7e-40 seq855 170 4e-37 seq439 131 3e-25 seq294 98.7 2e-15 >seq1241 Length=4265459 Score = 188 bits (208), Expect = 1e-42 Identities = 565/864 (65%), Gaps = 24/864 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||| || || || || | ||||| |||||||| |||||||||| || ||| ||| Sbjct 519489 CTGATACTCGCCGACGCGCTTCTCRAAGAAGTTGGTCTTCCCCTGCAGGCTGATCAGCTC 519548 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC----CGTGTCAGGCCCATCTGTTCCA 47954 ||| | ||| ||||| | || |||| | ||| || ||| | ||| Sbjct 519549 CATCCAATCGAACGGGTTCTGGACATTGTACATCTTGCCGTATC----CCAACGAGCCCA 519604 Query 47955 GCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGA 48014 |||| ||||||| ||| |||||||||| | ||| || | |||||| || | | Sbjct 519605 GCAGCCGATCCGCCACGAACTCGATGTACGTGCCCATCAGATCGCCGTTCATACCCACCA 519664 Query 48015 GGG-ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACA 48073 | | |||||| || || | | |||||| |||| |||| ||| || | || || Sbjct 519665 GCGCACACGG-CAGCGCGTCGCACACGAACTCCCTCTCGATCTCCACCGCGTTCCGTACG 519723 Query 48074 ATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAG 48133 ||| |||||| || ||| | || || | ||| || | || |||| || Sbjct 519724 ATCGACTTAACCCGATCCTCGCTCAGCTTCTTCCTCAGCAGCGAG---TACAGCAAACAC 519780 Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193 || ||||| | ||||||||| ||||| || ||| || |||||||||| || || Sbjct 519781 GCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGTTCGTTGGAGAAAGTCAGTCCC 519840 Query 48194 GGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATG 48253 ||||| | || | || ||| ||||| || || || |||| || |||||||| || Sbjct 519841 GGCATTAAACCGCGCTTTTTAAGCCAAAATATCGCGCAGAAACTCCCCGAGAAGAAAATC 519900 Query 48254 CCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATC 48313 |||||||| || || || || | ||| ||||||| || ||| |||| Sbjct 519901 CCCTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCGGAGCCGTC---GATC 519957 Query 48314 CAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAG 48373 || || ||||| | ||||||||| || ||| || || || || || || ||||| Sbjct 519958 CATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCGATCGCGTGGAAG 520017 Query 48374 AGC---TTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATC 48430 || | ||| ||| | | |||| | || || ||| || ||||||| Sbjct 520018 AGGCGGTGCTT---CTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGGCTGTACATC 520074 Query 48431 TCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACC 48490 || ||||| | ||||| || || |||||||||||||||||||| | |||||| ||| Sbjct 520075 TCGGAGTGGATGTTCTCAATGGCTATCTGGAACCCGTAGAAGGCGCGGGCCTCGGCGACC 520134 Query 48491 TGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCATCTGAAGCAGC 48549 || || || | || ||| ||||| ||||||||| ||| || || || || ||||| Sbjct 520135 TGGACCTCCTTCATAAACCTC-CCAGCGAGATTCTCAAGGACGATGCCGTCGGAGGCAGC 520193 Query 48550 AAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCC 48609 |||||||| || | || | ||| || | |||| || || || || | |||| Sbjct 520194 GAAGAAGGCGAGAATGTGCGAGACGAAGTGCCTCTCGCCGTCGGATAGGGCCTCCCAGTG 520253 Query 48610 CTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTT 48669 | | ||| | || ||||| || || || | ||||||||||| || || || || Sbjct 520254 GCGGATGTCCTGGCATAGGTCGACCTCCTCGGCGGTCCAGAAGGAGGCCTCGGCCTTCTT 520313 Query 48670 GTACATGCCCCATATGTCCGGATA 48693 |||||| |||| || ||||| || Sbjct 520314 GTACATTTCCCAGATTTCCGGGTA 520337 >seq9 Length=33717675 Score = 179 bits (198), Expect = 7e-40 Identities = 561/863 (65%), Gaps = 22/863 (3%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || || || | ||||| |||||||| |||||||||| | ||| ||| Sbjct 737744 CTGGTACTCGCCGACGCGTTTCTCGAAGAAGTTGGTCTTCCCCTGGAGGCTGATCAGCTC 737685 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACA----CCCGTGTCAGGCCCATCTGTTCCA 47954 ||| | ||| ||||| | ||| |||| ||||| || ||| | ||| Sbjct 737684 CATCCAATCGAAAGGGTTCTGGACGTTGTACATTTTCCCGTATC----CCAACGCGCCCA 737629 Query 47955 GCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGA 48014 |||| |||| |||||| |||||||||| | ||| || |||||| || | | Sbjct 737628 GCAGCCGATCTGCGACGAACTCGATGTAGGTGCTCATCAGATCACCGTTCATCCCCACCA 737569 Query 48015 GGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAA 48074 ||| |||| || | | ||||||||||| |||| ||| || | || || | Sbjct 737568 GGGCGCAAGGCAGCGCGTCGCACACGAACTCCTTCTCGATCTCCACCGCGTTCCGAACTA 737509 Query 48075 TCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGG 48134 || ||| | || ||| | || | | ||| || | || |||| || | Sbjct 737508 TCGACTTTATCCGATCCTCGCTCAGCTTCTGCCTCAGTAGCGAG---TACAGCAAACACG 737452 Query 48135 CAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAG 48194 | ||||| | ||||||||| ||||| || ||| ||| |||| ||||| || || | Sbjct 737451 CGAAGTCGCAGTGCAAGCCCTCGTCTCGTGAGATCAGCTCGTTCGAGAAAGTCAGTCCCG 737392 Query 48195 GCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGC 48254 |||| | || | || ||| ||||| || || || ||| ||||||||||| || | Sbjct 737391 GCATTAAACCGCGCTTTTTTAGCCAAAATATCGCGCAAAAACTCCCAGAGAAGAAAATCC 737332 Query 48255 CCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCC 48314 | ||||| || || || || | ||| ||||||| | ||| ||||| Sbjct 737331 CTTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCAGAGCCGTC---GATCC 737275 Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA 48374 | || ||||| | ||||||||| || ||| || || || || || || |||||| Sbjct 737274 ATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCGATCGCGTGGAAGA 737215 Query 48375 GC---TTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCT 48431 | | ||| ||| | | ||| | || || ||| || |||||||| Sbjct 737214 GGCGGTGCTT---CTCGTCAGAATCCTTGATGTACGTCTCGAGAAGGAGGCTGTACATCT 737158 Query 48432 CAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCT 48491 | ||||| | ||||| || ||||||||||||||||||||||| | |||||| |||| Sbjct 737157 CGGAGTGGATGTTCTCGATTGCGATCTGGAACCCGTAGAAGGCGCGGGCCTCGGCGACCT 737098 Query 48492 GCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCATCTGAAGCAGCA 48550 | || || | ||| || ||| || |||||||| ||| || ||||| ||||| || Sbjct 737097 GGACCTCCTTCATGAACCT-TCCGGCGAGATTCTCCAGGACAATTCCATCGGAAGCGGCG 737039 Query 48551 AAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCC 48610 |||||||| |||| || | ||| || | |||| || || ||||| | |||| Sbjct 737038 AAGAAGGCGAGGATGTGCGAGACGAAGTGCCTCTCGCCGTCGGATAGAGCTTCCCAGTGG 736979 Query 48611 TGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTG 48670 | ||||| | || ||||| || || || | ||||||||||| || || || ||| Sbjct 736978 CGGACGTCCTGGCAAAGGTCGACCTCCTCGGCGGTCCAGAAGGAGGCTTCCGCCTTCTTG 736919 Query 48671 TACATGCCCCATATGTCCGGATA 48693 ||||| |||| || || || || Sbjct 736918 TACATTTCCCAGATTTCAGGGTA 736896 >seq855 Length=4499644 Score = 170 bits (188), Expect = 4e-37 Identities = 435/657 (66%), Gaps = 14/657 (2%) Strand=Plus/Plus Query 48041 AACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGAGGGT 48100 |||||| |||| |||| ||| || | || || ||| |||||| || ||| | Sbjct 753797 AACTCCCTCTCGATCTCCACCGCGTTCCGTACGATCGACTTAACCCGATCCTCGCTCAGC 753856 Query 48101 TTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCC 48160 || || | ||| || | || |||| || || ||||| | ||||||||| ||||| Sbjct 753857 TTCTTCCTCAGCAGCGAG---TACAGCAAACACGCGAAGTCGCAGTGCAAGCCCTCGTCT 753913 Query 48161 CGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAG 48220 || ||| || |||||||||| || || ||||| | || | || ||| ||||| Sbjct 753914 CGCGAGATCAGTTCGTTGGAGAAAGTCAGTCCCGGCATTAAACCGCGCTTTTTAAGCCAA 753973 Query 48221 AAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGC 48280 || || || |||| || |||||||| || |||||||| || || || || Sbjct 753974 AATATCGCGCAGAAACTCCCCGAGAAGAAAATCCCCTCCACGCAGGCAAAGGCCACGATT 754033 Query 48281 CTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTC 48340 | ||| ||||||| || ||| |||||| || ||||| | ||||||||| Sbjct 754034 CGCTCCGCGAAAGACTCGGAGCCGTC---GATCCATCTCAGGGCCCACTGGGCCTTCTTC 754090 Query 48341 TTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGC---TTCTTGCACTCACCTGCGTCC 48397 || ||| || || || || || || ||||||| | ||| ||| | | |||| Sbjct 754091 GCGACGCAGGGGATGGTGTCGATCGCGTGGAAGAGGCGGTGCTT---CTCGTCGGAGTCC 754147 Query 48398 GCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATC 48457 | || || ||| || ||||||||| ||||| | ||||| || || ||| Sbjct 754148 TTGATGTACGTCTCGAGAAGGAGGCTGTACATCTCGGAGTGGATGTTCTCAATGGCTATC 754207 Query 48458 TGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGC 48517 ||||||||||||||||| | |||||| ||||| || || | || ||| ||||| Sbjct 754208 TGGAACCCGTAGAAGGCGCGGGCCTCGGCGACCTGGACCTCCTTCATAAACCTC-CCAGC 754266 Query 48518 -AGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAA 48576 ||||||||| ||| || || || || ||||| |||||||| || | || | ||| Sbjct 754267 GAGATTCTCAAGGACGATGCCGTCGGAGGCAGCGAAGAAGGCGAGAATGTGCGAGACGAA 754326 Query 48577 ATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTC 48636 || | |||| || || || || | |||| | | ||| | || ||||| || || Sbjct 754327 GTGCCTCTCGCCGTCGGATAGGGCCTCCCAGTGGCGGATGTCCTGGCATAGGTCGACCTC 754386 Query 48637 TTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACATGCCCCATATGTCCGGATA 48693 || | ||||||||||| || || || |||||||| |||| || ||||| || Sbjct 754387 CTCGGCGGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATTTCCCAGATTTCCGGGTA 754443 >seq439 Length=4537371 Score = 131 bits (144), Expect = 3e-25 Identities = 193/271 (71%), Gaps = 2/271 (1%) Strand=Plus/Plus Query 48424 GTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTC 48483 ||||||||| ||||| | ||||| || ||||||||||||||||||||||| | |||||| Sbjct 763233 GTACATCTCGGAGTGGATGTTCTCGATTGCGATCTGGAACCCGTAGAAGGCGCGGGCCTC 763292 Query 48484 AAACACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCATCTG 48542 ||||| || || | ||| || ||| || |||||||| ||| || ||||| | Sbjct 763293 GGCGACCTGGACCTCCTTCATGAACCT-TCCGGCAAGATTCTCCAGGACAATTCCATCGG 763351 Query 48543 AAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCAT 48602 |||| || |||||||| |||| || | || || | |||| || || ||||| | Sbjct 763352 AAGCGGCGAAGAAGGCGAGGATGTGCGAGACAAAGTGCCTCTCGCCGTCGGATAGAGCTT 763411 Query 48603 TCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTG 48662 |||| | ||||| | || ||||| || || || | ||||||||||| || | Sbjct 763412 CCCAGTGGCGGACGTCCTGGCAAAGGTCGACCTCCTCGGCTGTCCAGAAGGAGGCTTCCG 763471 Query 48663 CTTTTTTGTACATGCCCCATATGTCCGGATA 48693 | || |||||||| |||| || || || || Sbjct 763472 CCTTCTTGTACATTTCCCAGATTTCAGGGTA 763502 >seq294 Length=3929810 Score = 98.7 bits (108), Expect = 2e-15 Identities = 105/136 (77%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 48424 GTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTC 48483 |||||||| || || | ||||| ||||||||||||||||||||||||| ||||||| Sbjct 3794776 GTACATCTTGGAATGGATGTTCTCAATAGCGATCTGGAACCCGTAGAAGGAGTTGGCCTC 3794835 Query 48484 AAACACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCATCTG 48542 || |||| || || | || |||| |||| ||||||||| ||| || ||||| | Sbjct 3794836 AACGACCTCGACCTCCTTCATAAACCTCT-CAGCAAGATTCTCAAGGACAATGCCATCGG 3794894 Query 48543 AAGCAGCAAAGAAGGC 48558 | ||||| |||||||| Sbjct 3794895 AGGCAGCGAAGAAGGC 3794910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931518233155840