Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1241 152 1e-31 seq855 152 1e-31 seq9 147 4e-30 seq439 125 1e-23 >seq1241 Length=4265459 Score = 152 bits (168), Expect = 1e-31 Identities = 384/574 (67%), Gaps = 11/574 (2%) Strand=Plus/Minus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 || || ||||| |||||||||||||| | ||| |||||||||||| ||| | || Sbjct 520331 GAAATCTGGGAAATGTACAAGAAGGCCGAGGCCTCCTTCTGGACCGCCGAGGAGGTCGAC 520272 Query 25534 CTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 || | ||||||| | |||| | || |||||| | | |||| ||| || || | Sbjct 520271 CTATGCCAGGACATCCGCCACTGGGAGGCCCTATCCGACGGCGAGAGGCACTTCGTCTCG 520212 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 || | | || ||||| || ||||| || || || || |||||||| | ||| Sbjct 520211 CACATTCTCGCCTTCTTCGCTGCCTCCGACGGCATCGTCCTTGAGAATCTCGCTGGGAGG 520152 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 || | | ||| || ||| || |||||| |||||||| |||||||| ||||| Sbjct 520151 TTTATGAAGGAGGTCCAGGTCGCCGAGGCCCGCGCCTTCTACGGGTTCCAGATAGCCATT 520092 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCC 25773 || || | ||||| ||| |||| | ||||| ||||||||| | ||| || | Sbjct 520091 GAGAACATCCACTCCGAGATGTACAGCCTCCTTCTCGAGACGTACATCAAGGACTCCGAC 520032 Query 25774 GAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGG 25833 |||| | || || || || ||||| ||| ||| || || || |||||| | | Sbjct 520031 GAGAAGCACCGCCTCTTCCACGCGATCGACACCATCCCCTGCGTCGCGAAGAAGGCCCAG 519972 Query 25834 TGGGCCATGAAGTGGATCAACAGC-CAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTT 25892 |||||| ||| |||||| || || | ||| | || | ||||| | || ||||| Sbjct 519971 TGGGCCCTGAGATGGATCGACGGCTCCGAG----TCTTTCGCGGAGCGAATCGTGGCCTT 519916 Query 25893 TG-CTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG-GCCATCTTCTGGCTCAAG 25950 || |||| |||||||| || || ||| ||| |||| | || || || ||||| || Sbjct 519915 TGCCTGC-GTGGAGGGGATTTTCTTC-TCGGGGAGTTTCTGCGCGATATTTTGGCTTAAA 519858 Query 25951 CAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGGGACGAGGG 26009 || || ||||| || ||| ||||| |||||||| || ||| | |||||||| Sbjct 519857 AAGCGCGGTTTAATGCCGGGACTG-ACTTTCTCCAACGAACTGATCTCGCGAGACGAGGG 519799 Query 26010 TCTCCACAGAGATTTTGCCTGCCTGCTCTACACG 26043 | ||| | || || || || |||| ||| || Sbjct 519798 CTTGCACTGCGACTTCGCGTGTTTGCTGTACTCG 519765 >seq855 Length=4499644 Score = 152 bits (168), Expect = 1e-31 Identities = 384/574 (67%), Gaps = 11/574 (2%) Strand=Plus/Minus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 || || ||||| |||||||||||||| | ||| |||||||||||| ||| | || Sbjct 754437 GAAATCTGGGAAATGTACAAGAAGGCCGAGGCCTCCTTCTGGACCGCCGAGGAGGTCGAC 754378 Query 25534 CTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 || | ||||||| | |||| | || |||||| | | |||| ||| || || | Sbjct 754377 CTATGCCAGGACATCCGCCACTGGGAGGCCCTATCCGACGGCGAGAGGCACTTCGTCTCG 754318 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 || | | || ||||| || ||||| || || || || |||||||| | ||| Sbjct 754317 CACATTCTCGCCTTCTTCGCTGCCTCCGACGGCATCGTCCTTGAGAATCTCGCTGGGAGG 754258 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 || | | ||| || ||| || |||||| |||||||| |||||||| ||||| Sbjct 754257 TTTATGAAGGAGGTCCAGGTCGCCGAGGCCCGCGCCTTCTACGGGTTCCAGATAGCCATT 754198 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCC 25773 || || | ||||| ||| |||| | ||||| ||||||||| | ||| || | Sbjct 754197 GAGAACATCCACTCCGAGATGTACAGCCTCCTTCTCGAGACGTACATCAAGGACTCCGAC 754138 Query 25774 GAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGG 25833 |||| | || || || || ||||| ||| ||| || || || |||||| | | Sbjct 754137 GAGAAGCACCGCCTCTTCCACGCGATCGACACCATCCCCTGCGTCGCGAAGAAGGCCCAG 754078 Query 25834 TGGGCCATGAAGTGGATCAACAGC-CAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTT 25892 |||||| ||| |||||| || || | ||| | || | ||||| | || ||||| Sbjct 754077 TGGGCCCTGAGATGGATCGACGGCTCCGAG----TCTTTCGCGGAGCGAATCGTGGCCTT 754022 Query 25893 TG-CTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG-GCCATCTTCTGGCTCAAG 25950 || |||| |||||||| || || ||| ||| |||| | || || || ||||| || Sbjct 754021 TGCCTGC-GTGGAGGGGATTTTCTTC-TCGGGGAGTTTCTGCGCGATATTTTGGCTTAAA 753964 Query 25951 CAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGGGACGAGGG 26009 || || ||||| || ||| ||||| |||||||| || ||| | |||||||| Sbjct 753963 AAGCGCGGTTTAATGCCGGGACTG-ACTTTCTCCAACGAACTGATCTCGCGAGACGAGGG 753905 Query 26010 TCTCCACAGAGATTTTGCCTGCCTGCTCTACACG 26043 | ||| | || || || || |||| ||| || Sbjct 753904 CTTGCACTGCGACTTCGCGTGTTTGCTGTACTCG 753871 >seq9 Length=33717675 Score = 147 bits (162), Expect = 4e-30 Identities = 384/576 (67%), Gaps = 15/576 (3%) Strand=Plus/Plus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 || || ||||| |||||||||||||| || ||| |||||||||||| ||| | || Sbjct 736902 GAAATCTGGGAAATGTACAAGAAGGCGGAAGCCTCCTTCTGGACCGCCGAGGAGGTCGAC 736961 Query 25534 CTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 || | ||||| | | |||| | ||||||||| | | |||| ||| || || | Sbjct 736962 CTTTGCCAGGACGTCCGCCACTGGGAAGCTCTATCCGACGGCGAGAGGCACTTCGTCTCG 737021 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 || | | || ||||| || || || ||||| || || |||||||| || || Sbjct 737022 CACATCCTCGCCTTCTTCGCCGCTTCCGATGGAATTGTCCTGGAGAATCTCGCCGGAAGG 737081 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 |||| | ||| || ||| || |||||| |||||||| |||||||| || ||| Sbjct 737082 TTCATGAAGGAGGTCCAGGTCGCCGAGGCCCGCGCCTTCTACGGGTTCCAGATCGCAATC 737141 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCC 25773 || || | ||||| ||| |||| | ||||| ||||||||| | || | | Sbjct 737142 GAGAACATCCACTCCGAGATGTACAGCCTCCTTCTCGAGACGTACATCAAGGATTCTGAC 737201 Query 25774 GAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGG 25833 |||| | || || || || ||||| ||| ||| || || || |||||| | | Sbjct 737202 GAGAAGCACCGCCTCTTCCACGCGATCGACACCATCCCCTGCGTCGCGAAGAAGGCCCAG 737261 Query 25834 TGGGCCATGAAGTGGATCAACAGC-CAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTT 25892 |||||| ||| |||||| || || | ||| | || | ||||| | || ||||| Sbjct 737262 TGGGCCCTGAGATGGATCGACGGCTCTGAG----TCTTTCGCGGAGCGAATCGTGGCCTT 737317 Query 25893 TG-CTGCTGTGGAGGGCATCTTTTTC---AGCGGTTCGTTTGCGGCCATCTTCTGGCTCA 25948 || |||| ||||| || || || ||| | ||| ||||| || || || ||||| | Sbjct 737318 TGCCTGC-GTGGAAGGGATTTTCTTCTCTGGGAGTT--TTTGC-GCGATATTTTGGCTAA 737373 Query 25949 AGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGGGACGAG 26007 | || || ||||| || ||| ||||| || |||||||| ||| | |||||| Sbjct 737374 AAAAGCGCGGTTTAATGCCGGGACTG-ACTTTCTCGAACGAGCTGATCTCACGAGACGAG 737432 Query 26008 GGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACG 26043 || | ||| | || || || || |||| ||| || Sbjct 737433 GGCTTGCACTGCGACTTCGCGTGTTTGCTGTACTCG 737468 >seq439 Length=4537371 Score = 125 bits (138), Expect = 1e-23 Identities = 258/384 (67%), Gaps = 0/384 (0%) Strand=Plus/Minus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 || || ||||| |||||||||||||| || ||| |||||| ||||| ||| | || Sbjct 763496 GAAATCTGGGAAATGTACAAGAAGGCGGAAGCCTCCTTCTGGACAGCCGAGGAGGTCGAC 763437 Query 25534 CTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 || | ||||| | | |||| | ||||||||| | | |||| ||| ||| || | Sbjct 763436 CTTTGCCAGGACGTCCGCCACTGGGAAGCTCTATCCGACGGCGAGAGGCACTTTGTCTCG 763377 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 || | | || ||||| || || || ||||| || || |||||||| || || Sbjct 763376 CACATCCTCGCCTTCTTCGCCGCTTCCGATGGAATTGTCCTGGAGAATCTTGCCGGAAGG 763317 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 |||| | ||| || ||| || |||||| |||||||| |||||||| || ||| Sbjct 763316 TTCATGAAGGAGGTCCAGGTCGCCGAGGCCCGCGCCTTCTACGGGTTCCAGATCGCAATC 763257 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCC 25773 || || | ||||| ||| |||| | ||||| ||||||||| | || | | Sbjct 763256 GAGAACATCCACTCCGAGATGTACAGCCTCCTTCTCGAGACGTACATCAAGGATTCTGAC 763197 Query 25774 GAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGG 25833 |||| | || || || || ||||| ||| ||| || || || |||||| | | Sbjct 763196 GAGAAGCACCGCCTCTTCCACGCGATCGACACCATCCCCTGCGTCGCGAAGAAGGCCCAG 763137 Query 25834 TGGGCCATGAAGTGGATCAACAGC 25857 |||||| ||| |||||| || || Sbjct 763136 TGGGCCCTGAGATGGATCGACGGC 763113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928830275189440