Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq9 269 3e-67 seq672 253 2e-62 seq1241 176 5e-39 seq13 168 7e-37 seq11 125 7e-24 seq1081 93.3 4e-14 seq629 87.8 2e-12 seq8 87.8 2e-12 seq12 84.2 2e-11 >seq9 Length=33717675 Score = 269 bits (298), Expect = 3e-67 Identities = 449/642 (70%), Gaps = 10/642 (2%) Strand=Plus/Plus Query 9942 GTTGGTACACTCACGGACTTGCAAGTAGTTACCTTGAGGGTGCTAATTTCCTTACAGCGG 10001 ||||||| || || || | |||||| || | || || |||| ||| | | | | Sbjct 26714187 GTTGGTATACCCATAGATTAGCAAGTTCCTATTTGGAAGGCTCTAACTTCTTAAGTGATG 26714246 Query 10002 CTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCT-ACTTTGGGGTCCTGAG 10060 | || || || || ||| || | | | || | |||| || | ||| ||||||||||| Sbjct 26714247 CAGTTTCCACTCCGGCTAATAGTTTAGCGCACT-TCTTGTTGTTACTATGGGGTCCTGAA 26714305 Query 10061 TCTCAGGGAGATTTCGTCCGCTGGATCCAGCTTGGGGGACTCTGGGCTTTTGTGGCGCTC 10120 | || |||||||| || ||| || | || | || | | ||||||| || || Sbjct 26714306 GCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCAGTCTATAGACTTTTGTTGCACTA 26714365 Query 10121 CACGGAGCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTTGAGCTGGCGAGATTAATT 10180 || || || |||| |||| || ||||||||||| || |||||||| || ||| || Sbjct 26714366 CATGGCGCTTTCGAACTAATAGG-TTTATGTTACGTCAATTTGAGCTTGCTCGATCTGTT 26714424 Query 10181 GGAATCCGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTTTGTCAGTGTT 10240 | | | |||||| ||||| || || || || || || ||||||||||| || ||| Sbjct 26714425 GAATTGTGACCTTGTAATGCAATTGCATTCTCCGGTCCAATTGCTGTTTT-GTTTCTGTA 26714483 Query 10241 TTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCGGCGTCGCG 10300 ||||| || ||||| | || |||||||||||||||||||| || ||||| || || || Sbjct 26714484 TTCCTAATTTATCCGTTAGGTCAGTCTAGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCA 26714543 Query 10301 GCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTC 10360 || || || | ||| | ||||| | ||||| |||||||||||||| || || || || Sbjct 26714544 GCTATATTTTGATTCATCCTCTTTTTYCAGGGGTTTCATAATTGGACACTAAACCCATTT 26714603 Query 10361 CATATGATGGGAGTTGCTGGTATACTGGGAGGGGCGCTCCTATCAGCAATCCACGGAGTC 10420 |||||||||||||||| ||| | |||| | || | ||| || || ||||| | Sbjct 26714604 CATATGATGGGAGTTGTTGGGGTGTTGGGCGCTGCTTTGTTATGCGCTATTCACGGTG-- 26714661 Query 10421 ACTGT-AGAAAACACACTTTA--TCAAGATGGCGAACAAGCAAACACTTTCAAAGCTTTT 10477 || | | |||| | |||||| | |||||| || ||||| || ||| | ||| Sbjct 26714662 -CTATCATAAAAAATACTTTATTTGGAGATGGTGATGGTGCAAATACATTCCGTGGTTTC 26714720 Query 10478 GATAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAG 10537 | ||||||| ||||| || ||||| ||||| || |||||| || |||||||| Sbjct 26714721 AACCCAACTCAAGTTGAAGAAACTTATTCAATGGTCACCACTAACCRCTTTTGGTCCCAA 26714780 Query 10538 ATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTC 10579 || ||| | |||||||| ||||||||| ||| | |||||| Sbjct 26714781 ATCTTTAGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTC 26714822 >seq672 Length=1945142 Score = 253 bits (280), Expect = 2e-62 Identities = 517/768 (67%), Gaps = 35/768 (5%) Strand=Plus/Minus Query 9815 TTTGACATCCTTGATGACTGGCTTA--AACGAGATCGCTTTGTTTTTGTGGGTTGGTCTG 9872 ||||| || | ||||||||| ||| || || | ||||| |||||||| ||||||||| Sbjct 1649958 TTTGATATTATGGATGACTGG-TTACGAAGGA-ACCGCTTCGTTTTTGTAGGTTGGTCTA 1649901 Query 9873 GACTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGCACTACGT 9932 | | | | || ||||| ||| ||| | || | || || ||| | || | | Sbjct 1649900 GCCAATTACTCTTTCCTTGTGCCTATTTYGCTTTAGGGGGTTGGTT----GGAA-----T 1649850 Query 9933 TTGTCACGAGTTGGTACACTCACGGACTTGCAAGTAGTTACCTTGAGGGTGCTAATTTCC 9992 || | |||||| || || || | |||||| || | || || ||| ||| Sbjct 1649849 TTA-----ATTTGGTATACCCATAGATTAGCAAGTTCCTATTTGGAAGGCTTTAACTTCT 1649795 Query 9993 TTACAGCGGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCT-ACTTTGG 10051 | | | || || || || || ||| || | | | || | |||| || | ||| ||| Sbjct 1649794 TAAGTGATGCAGTTTCCACTCCGGCTAATAGTTTAGCGCACT-TCTTGTTGTTACTATGG 1649736 Query 10052 GGTCCTGAGTCTCAGGGAGATTTCGTCCGCTGGATCCAGCTTGGGGGACTCTGGGCTTTT 10111 |||||||| | || |||||||| || ||| || | || | || | | ||||| Sbjct 1649735 GGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCAGTCTATAGACTTTT 1649676 Query 10112 GTGGCGCTCCACGGAGCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTTGAGCTGGCG 10171 || || || || || || |||| |||| || ||||||||||| || |||||||| || Sbjct 1649675 GTTGCACTACATGGCGCTTTCGGACTAATAGG-TTTATGTTACGTCAATTTGAGCTTGCT 1649617 Query 10172 AGATTAATTGGAATCCGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTTT 10231 ||| || | | |||||| ||||| || || || || || || |||||||||||| Sbjct 1649616 CGATCTGTTSAATTGTGACCTTRTAATGCAATTGCATTCTCCGGTCCAATTGCTGTTTTT 1649557 Query 10232 GTCAGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTC 10291 || ||| ||||| || |||| | || |||||| ||||||||||||| || ||||| Sbjct 1649556 GTTTCTGTATTCCTAATTTATCYRTTAGGTCAGTCTRGTTGGTTCTTTGCACCTAGTTTT 1649497 Query 10292 GGCGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTC 10351 || || || || || || | ||| | ||||| | ||||| |||||||||||||| || Sbjct 1649496 GGTGTAGCAGCTATATTTTGATTCATCCTCTTTTTYCAGGGGTTTCATAATTGGACACTA 1649437 Query 10352 AATCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGAGGGGCGCTCCTATCAGCAATC 10411 || || || |||||||||||||||| ||| | |||| | || | ||| || || Sbjct 1649436 AACCCATTTCATATGATGGGAGTTGTTGGGGTGTTGGGCGCTGCTYTGTTATGCGCTATT 1649377 Query 10412 CACGGAGTCACTGTAGAAAACACACTTTATCAAGATGGCGAACAAGCAAACACTTTCAAA 10471 ||||| | | || |||| || | | | |||||| ||| ||| Sbjct 1649376 CACGGTGCTATCATARAAAATACTTTATTTGGAGATGGGGAA-----------ATTC--- 1649331 Query 10472 GCTTTTGATAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGG 10531 ||| | ||||||| ||||| || ||||| ||||| || |||||| || ||| Sbjct 1649330 CGGTTTAACCCAACTCAAGTTGAAGAAACTTATTCAATGGTCACCACTAACCRCTTTTGG 1649271 Query 10532 TCCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTC 10579 ||||| || ||| | |||||||| ||||||||| ||| | |||||| Sbjct 1649270 TCCCAAATCTTTAGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTC 1649223 >seq1241 Length=4265459 Score = 176 bits (194), Expect = 5e-39 Identities = 255/355 (72%), Gaps = 4/355 (1%) Strand=Plus/Minus Query 8290 GGCTGGTTTGGCGTTCTCATGATCCCAACCCTTCTTG-CCGCTACAATTTGCTTCATTAC 8348 || |||||||| ||| | ||||||| || || ||| |||| || | || |||| Sbjct 4250727 GGATGGTTTGGTGTTTTGATGATCCTTACT-TTATTGACCGCAACTTCTGTATTTATTAT 4250669 Query 8349 CGCATTCGTTGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGGATC 8408 || ||| ||||||| ||||| | || || || || || || ||||| ||| ||||||| Sbjct 4250668 TGCTTTCATTGCTGCACCTCCAATAGATATTGATGGTATTCGTGAACCTGTTTCTGGATC 4250609 Query 8409 TCTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAATTGG 8468 | | | || || | ||| || || | | |||| || |||| | ||| || || || Sbjct 4250608 TTTACTTTATGGAAGCAATATTATTTTTTGTGCCATTATTCCTACTTCTGCAGCTATAGG 4250549 Query 8469 CCTCCACTTCTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGTGG 8528 | ||||| ||||| || |||||||| ||||| ||||||| ||| | ||||| ||||| Sbjct 4250548 TTTGCACTTTTACCCTATATGGGAAGCGACTTCTGTTGATGAATGGTTATACAATGGTGG 4250489 Query 8529 TCCTTACCAGCTTGTAGTTTTCCACTTCCTCCTTGGCGT-CTTTGCTTATATGGGTCGTG 8587 |||||| |||| | ||| | |||||| | ||||| || |||| || ||||||||| Sbjct 4250488 TCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGC-TACGTGGGTCGTG 4250430 Query 8588 AATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTC 8642 | ||||||||| || || || || || || |||||||| ||||||||| || Sbjct 4250429 AGTGGGAACTTAGTTTTCGTCTGGGTATACGCCCTTGGATTGTTGTTGCATATTC 4250375 >seq13 Length=34719086 Score = 168 bits (186), Expect = 7e-37 Identities = 255/360 (71%), Gaps = 4/360 (1%) Strand=Plus/Plus Query 8290 GGCTGGTTTGGCGTTCTCATGATCCCAACCCTTCTTG-CCGCTACAATTTGCTTCATTAC 8348 || |||||||| ||| | ||||||| || || ||| |||| || | || |||| Sbjct 21513248 GGATGGTTTGGTGTTTTGATGATCCTTACT-TTATTGACCGCAACTTCTGTATTTATTAT 21513306 Query 8349 CGCATTCGTTGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGGATC 8408 || ||| || |||| ||||| | || || || || || || ||||| ||| ||||||| Sbjct 21513307 TGCTTTCATTRCTGCACCTCCAATAGATATTGATGGTATTCGTGAACCTGTTTCTGGATC 21513366 Query 8409 TCTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAATTGG 8468 | | | || || | ||| || || | | |||| || |||| | ||| || || || Sbjct 21513367 TTTACTTTATGGAAGCAATATTATTTTTTGTGCCATTATTCCTACTTCTGCAGCTATAGG 21513426 Query 8469 CCTCCACTTCTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGTGG 8528 | ||||| ||||| || |||||||| ||||| ||||||| ||| | ||||| ||||| Sbjct 21513427 TTTGCACTTTTACCCTATATGGGAAGCGACTTCTGTTGATGAATGGTTATACAATGGTGG 21513486 Query 8529 TCCTTACCAGCTTGTAGTTTTCCACTTCCTCCTTGGCGT-CTTTGCTTATATGGGTCGTG 8587 |||||| |||| | ||| | |||||| | ||||| || |||| || ||||||||| Sbjct 21513487 TCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGC-TACGTGGGTCGTG 21513545 Query 8588 AATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCTC 8647 | ||||||||| || || || || || |||||||| ||||||||| || ||| Sbjct 21513546 AGTGGGAACTTAGTTTTYKTCTGGGTATACGCCCTTGGATTGTTGTTGCATATTCARCTC 21513605 >seq11 Length=35299535 Score = 125 bits (138), Expect = 7e-24 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 10531 GTCCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTT 10590 |||||| || ||||| ||||| || |||||||| ||| | |||||| ||||| | || Sbjct 68910 GTCCCACATCTTTGGGGTTGCTGTTTCCAATAAACATTGGTTACATTTCCTTATGTTATT 68851 Query 10591 TGTACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCT 10650 ||||| || | ||| | |||| | || ||| | | | ||||| || | || || Sbjct 68850 TGTACTAGTAACCGGTTTATGGATGAGTGCTCTTGAAGTAGTGGGTCTGGCCTTGAACCT 68791 Query 10651 TCGTGCTTACGATTTTGTATCTCAAGAGATC-AGGGCGTCAGAAGATCCTGAATTTGAGA 10709 |||| || |||||||| ||||| | ||| | | || |||||||||||||||||||| Sbjct 68790 ACGTGTCTATGATTTTGTTTCTCAGAAAATCCATGTAGT-AGAAGATCCTGAATTTGAGA 68732 Query 10710 CGTTCTATACGAAGAATATCCTTCTGAACGAAGGTCTTCGTGCATGGATGG 10760 | ||||| || || ||||| || | || |||||| | | ||| ||||||| Sbjct 68731 CTTTCTAAACCAACAATATTCTCTTAAATGAAGGTATACATGCTTGGATGG 68681 >seq1081 Length=585217 Score = 93.3 bits (102), Expect = 4e-14 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 10263 AGTCTAGTTGGTTCTTTGCGCCGAGTTTCGGCGTCGCGGCGATTTTCCGCTTCCTTCTCT 10322 ||||||||||||||||||||| | ||| | || || || || || | ||| | |||| Sbjct 578919 AGTCTAGTTGGTTCTTTGCGCTCAATTTTCGTGTGGCAGCTATATTTTGATTCATCCTCT 578860 Query 10323 TCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATATGATGGGAGTTGCTGGTA 10382 | ||||||| ||||||||||| || | || || ||||||||| |||||| ||| Sbjct 578859 TTTTCCAGGGGTTTCATAATTGAACATTGAACTYATTTCATATGATGAGAGTTGTTGGAG 578800 Query 10383 TACTGGGAGGGGCGCTCCTATCAGCAATCCACGGAGTCACTGTAGAAAACACACTTTATC 10442 | |||| || || ||| | || || || || ||||||||| | || | | | Sbjct 578799 TGTTGGGCACTGCTCTRTTATGCACTATTCATGGTGTTACTGTAGAAGATACTTTATTTG 578740 Query 10443 AAGATGGCGA 10452 ||||||| || Sbjct 578739 AAGATGGTGA 578730 >seq629 Length=2291386 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 8878 ACCACCGAAACCGAGTCTCAAAACTATGGCTACAAGTTCGGTCAAGAAGAGGAAACTTAC 8937 ||||| |||| || | | || || || |||| || |||||||| || ||||| ||| Sbjct 2030054 ACCACAGAAAATGAATATGCTAATTACGGTTACAGATTTGGTCAAGAGGAAGAAACCTAC 2029995 Query 8938 AACATTGTTGCCGCTCATGGCTACTTTGGTCGCTTGATCTTCCAATATGCATCTTTTAAC 8997 || || || || |||||||| || ||||| | ||||||||||||||||| ||| ||| Sbjct 2029994 AATATCGTAGCGGCTCATGGTTATTTTGGCTGATTGATCTTCCAATATGCTAGTTTGAAC 2029935 Query 8998 AATTCT 9003 || ||| Sbjct 2029934 AACTCT 2029929 >seq8 Length=29603939 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 8878 ACCACCGAAACCGAGTCTCAAAACTATGGCTACAAGTTCGGTCAAGAAGAGGAAACTTAC 8937 ||||| |||| || | | || || || |||| || |||||||| || ||||| ||| Sbjct 4091897 ACCACAGAAAATGAATATGCTAATTACGGTTACAGATTTGGTCAAGAGGAAGAAACCTAC 4091956 Query 8938 AACATTGTTGCCGCTCATGGCTACTTTGGTCGCTTGATCTTCCAATATGCATCTTTTAAC 8997 || || || || |||||||| || ||||| | ||||||||||||||||| ||| ||| Sbjct 4091957 AATATCGTAGCGGCTCATGGTTATTTTGGCTGATTGATCTTCCAATATGCTAGTTTGAAC 4092016 Query 8998 AATTCT 9003 || ||| Sbjct 4092017 AACTCT 4092022 >seq12 Length=31678690 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/118 (76%), Gaps = 1/118 (1%) Strand=Plus/Minus Query 10691 GAAGATCCTGAA-TTTGAGACGTTCTATACGAAGAATATCCTTCTGAACGAAGGTCTTCG 10749 |||||||||||| |||||||| ||||| || || ||||| || | | |||||| ||| Sbjct 15529645 GAAGATCCTGAATTTTGAGACTTTCTACACCAAAAATATTCTCTTAAGTGAAGGTATTCA 15529586 Query 10750 TGCATGGATGGCACCAGTTGACCAACCACACGAAAGCTTTGTTTTCCCAGAAGAAGTT 10807 ||| ||||||||| | || ||||| || |||| | || | ||||| ||||| ||| Sbjct 15529585 TGCTTGGATGGCARCTTAAGATCAACCTCATGAAAACCTTATATTCCCTGAAGAGGTT 15529528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516471923544000