Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq111 89.7 4e-13 seq350 87.8 2e-12 seq317 82.4 6e-11 >seq111 Length=1131199 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || || || |||| || || || |||||| || || ||| Sbjct 723325 ATGCAAATTTTCGTGAAGACCCTAACAGGGAAGACAATTACCCTGGAGGTCGAGAGTTCC 723266 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || ||| | | | | || ||||||| || ||||| ||||| | || |||||| Sbjct 723265 GATACGATTGAYAACGTGAAAGCAAAAATTCAA-GACAAGGAGGGTATTCCTCCAGATCA 723207 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 |||||| | |||||||| || || |||||||||||| | ||| |||| ||||| || Sbjct 723206 GCAGAGATTGATCTTTGCCGGTAAGCAATTGGAAGATGGCAGGACTCTGGCGGATTACAA 723147 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||| ||||| || || ||| |||| |||| Sbjct 723146 CATCCAAAAGGAGTCAACTTTGCATTTGGT 723117 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || || || ||||| |||| || || || || ||| |||| || ||| Sbjct 723781 ATGCAGATCTTCGTCAAAACCCTAACCGGGAAGACGATCACCCTCGAAGTCGAGAGTTCC 723722 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || ||| | | || | ||| || ||| || || |||||| | ||| || || Sbjct 723721 GACACGATCGATAATGTTAAGGCCAAGATCCAGGATAAGGAGGGAATTCCCCCTGACCAG 723662 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 |||||||||||||| || ||||| |||||||| || || | ||||| |||||| Sbjct 723661 CAGAGACTTATCTTCGCCGGCAAGCAATTGGAGGACGGCCGCACCCTAGCCGACTATAAC 723602 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || || || || || ||||| ||| |||| | |||| ||||||| || Sbjct 723601 ATCCAGAAGGAGTCGACTCTCCACTTGGTTCTCCGATTGAGAGGAGGTAT 723552 >seq350 Length=1502417 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 28668 GATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 28727 |||||||||||| | || ||||| || ||||||||||||||| | |||| | || ||| Sbjct 383383 GATCAACAGAGATTGATTTTTGCCGGTAAACAATTGGAAGATGGTCGAACTCTTGCAGAT 383324 Query 28728 TATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 |||||||| || || || || || || ||| |||| || || | ||||||| Sbjct 383323 TATAACATCCAGAAGGAGTCAACGCTTCACCTGGTTTTGAGGCTGAGAGGAGG 383271 >seq317 Length=1923123 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || || || ||||| |||| || || || ||||| ||| ||| || Sbjct 1311080 ATGCAGATCTTCGTCAAAACCCTAACCGGGAAKACGATTACTCTGGAAGTGGAGAGCTCG 1311021 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | | ||||| || ||| || || |||||| | ||| || || Sbjct 1311020 GACACTATTGACAACGTCAAGGCCAAGATCCAGGATAAGGAGGGAATTCCCCCGGACCAG 1310961 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| || |||||||| || || || ||||| ||| ||| | ||||||||||| Sbjct 1310960 CAGAGGCTGATCTTTGCCGGAAAGCAGTTGGAGGATGGCCGAACCCTAGCCGATTATAAT 1310901 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| || || || ||||| ||| |||| | |||| ||||||| || Sbjct 1310900 ATTCAGAAGGAGTCGACTCTCCACTTGGTTCTGCGATTGAGAGGAGGTAT 1310851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425398314039129