Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq9 250 3e-61 seq672 242 4e-59 seq1241 187 3e-42 seq13 179 4e-40 seq376 89.7 6e-13 seq1185 86.0 7e-12 seq14 86.0 7e-12 seq12 84.2 2e-11 >seq9 Length=33717675 Score = 250 bits (276), Expect = 3e-61 Identities = 441/639 (69%), Gaps = 4/639 (1%) Strand=Plus/Plus Query 162244 GTTGGTATACTCACGGACTTGCGAGTTCCTATCTTGAGGGTGCAAACTTTCTTACTGCGG 162303 |||||||||| || || | || ||||||||| | || || | ||||| | | || | Sbjct 26714187 GTTGGTATACCCATAGATTAGCAAGTTCCTATTTGGAAGGCTCTAACTTCTTAAGTGATG 26714246 Query 162304 CAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTT-CTATGGGGTCCTGAG 162362 ||||||| ||||| || | | | | || | |||| | || |||||||||||||| Sbjct 26714247 CAGTTTCCACTCCGGCTAATAGTTTAGCGCACT-TCTTGTTGTTACTATGGGGTCCTGAA 26714305 Query 162363 TCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTC 162422 | ||||| || || | || ||||| ||| | || | || | ||||||||| || || Sbjct 26714306 GCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCAGTCTATAGACTTTTGTTGCACTA 26714365 Query 162423 CACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGCACGACTTATC 162482 || || || || | ||| |||||||| ||| | || || ||||| || || ||| | | Sbjct 26714366 CATGGCGCTTTCGAACTAATAGGTTT-ATGTTACGTCAATTTGAGCTTGCTCGATCTGTT 26714424 Query 162483 GGTATTCGTCCTTACAATGCTATTGCTTTCTCAGGTCCTATTGCTGTATTCGTTAGTGTT 162542 | | | |||| ||||| ||||| ||||| ||||| |||||||| || ||| ||| Sbjct 26714425 GAATTGTGACCTTGTAATGCAATTGCATTCTCCGGTCCAATTGCTGT-TTTGTTTCTGTA 26714483 Query 162543 TTTCTTATCTATCCTTTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCA 162602 || || || ||||| || || || || |||||||| ||||| || || || ||| Sbjct 26714484 TTCCTAATTTATCCGTTAGGTCAGTCTAGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCA 26714543 Query 162603 GCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTAAATCCTTTT 162662 || || || ||||| | ||||| | || ||||| ||||| ||||| ||||| || ||| Sbjct 26714544 GCTATATTTTGATTCATCCTCTTTTTYCAGGGGTTTCATAATTGGACACTAAACCCATTT 26714603 Query 162663 CACATGATGGGCGTAGCAGGTATCCTTGGTGGTGCATTGCTCTCTGCTATTCATGGAGTG 162722 || |||||||| || | || | | || | ||| ||| | | |||||||| || | Sbjct 26714604 CATATGATGGGAGTTGTTGGGGTGTTGGGCGCTGCTTTGTTATGCGCTATTCACGGTGCT 26714663 Query 162723 ACAGTTGAAAATACACTGTACGAAGATGGCGAACAAGCAAACACTTTTAAAGCATTTGAC 162782 | | ||||||| | | | |||||| || ||||| || || | || || Sbjct 26714664 ATCATAAAAAATACTTTATTTGGAGATGGTGATGGTGCAAATACATTCCGTGGTTTCAAC 26714723 Query 162783 TCCACACAGGAGGAAGAAACGTATTCGATGGTTACTGCGAACCGCTTCTGGTCACAGATT 162842 | || || | |||||||| ||||| ||||| || | |||| ||| ||||| || || Sbjct 26714724 CCAACTCAAGTTGAAGAAACTTATTCAATGGTCACCACTAACCRCTTTTGGTCCCAAATC 26714783 Query 162843 TTCGGTATTGCTTTTAGTAACAAGCGTTGGTTGCATTTC 162881 || | |||||||| || || |||||||| |||||| Sbjct 26714784 TTTAGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTC 26714822 >seq672 Length=1945142 Score = 242 bits (268), Expect = 4e-59 Identities = 512/766 (67%), Gaps = 31/766 (4%) Strand=Plus/Minus Query 162117 TTTGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGA 162176 |||||| | | || |||||| | ||| |||| ||||||||||| || |||||| | Sbjct 1649958 TTTGATATTATGGATGACTGGTTACGAAGGAACCGCTTCGTTTTTGTAGGTTGGTCTAGC 1649899 Query 162177 CTTCTTCTTTTTCCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTC 162236 | | || ||||| ||| ||| | ||| | ||||||||| | ||| | Sbjct 1649898 CAATTACTCTTTCCTTGTGCCTATTTYGCTTTAGGGGGTTGGTT-----GGAAT------ 1649850 Query 162237 GTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTGAGGGTGCAAACTTTCTT 162296 | | | ||||||||| || || | || ||||||||| | || || ||||| | Sbjct 1649849 -TTA--ATTTGGTATACCCATAGATTAGCAAGTTCCTATTTGGAAGGCTTTAACTTCTTA 1649793 Query 162297 ACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTT-CTATGGGG 162355 | || |||||||| ||||| || | | | | || | |||| | || |||||||| Sbjct 1649792 AGTGATGCAGTTTCCACTCCGGCTAATAGTTTAGCGCACT-TCTTGTTGTTACTATGGGG 1649734 Query 162356 TCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTTGT 162415 |||||| | ||||| || || | || ||||| ||| | || | || | ||||||||| Sbjct 1649733 TCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCAGTCTATAGACTTTTGT 1649674 Query 162416 GGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGCACG 162475 || || || || || || | ||| |||||||| ||| | || || ||||| || || || Sbjct 1649673 TGCACTACATGGCGCTTTCGGACTAATAGGTTT-ATGTTACGTCAATTTGAGCTTGCTCG 1649615 Query 162476 ACTTATCGGTATTCGTCCTTACAATGCTATTGCTTTCTCAGGTCCTATTGCTGTATTCGT 162535 | | | | | |||| ||||| ||||| ||||| ||||| |||||||| || || Sbjct 1649614 ATCTGTTSAATTGTGACCTTRTAATGCAATTGCATTCTCCGGTCCAATTGCTGTTTTTGT 1649555 Query 162536 TAGTGTTTTTCTTATCTATCCTTTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGG 162595 | ||| || || || |||| || || || || |||||||| ||||| || || Sbjct 1649554 TTCTGTATTCCTAATTTATCYRTTAGGTCAGTCTRGTTGGTTCTTTGCACCTAGTTTTGG 1649495 Query 162596 GGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTAAA 162655 || ||||| || || ||||| | ||||| | || ||||| ||||| ||||| ||||| Sbjct 1649494 TGTAGCAGCTATATTTTGATTCATCCTCTTTTTYCAGGGGTTTCATAATTGGACACTAAA 1649435 Query 162656 TCCTTTTCACATGATGGGCGTAGCAGGTATCCTTGGTGGTGCATTGCTCTCTGCTATTCA 162715 || ||||| |||||||| || | || | | || | ||| || | | |||||||| Sbjct 1649434 CCCATTTCATATGATGGGAGTTGTTGGGGTGTTGGGCGCTGCTYTGTTATGCGCTATTCA 1649375 Query 162716 TGGAGTGACAGTTGAAAATACACTGTACGAAGATGGCGAACAAGCAAACACTTTTAAAGC 162775 || | | | ||||||| | | | |||||| ||| || | Sbjct 1649374 CGGTGCTATCATARAAAATACTTTATTTGGAGATGGGGAA------------ATTCCGG- 1649328 Query 162776 ATTTGACTCCACACAGGAGGAAGAAACGTATTCGATGGTTACTGCGAACCGCTTCTGGTC 162835 ||| || | || || | |||||||| ||||| ||||| || | |||| ||| ||||| Sbjct 1649327 -TTTAACCCAACTCAAGTTGAAGAAACTTATTCAATGGTCACCACTAACCRCTTTTGGTC 1649269 Query 162836 ACAGATTTTCGGTATTGCTTTTAGTAACAAGCGTTGGTTGCATTTC 162881 || || || | |||||||| || || |||||||| |||||| Sbjct 1649268 CCAAATCTTTAGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTC 1649223 >seq1241 Length=4265459 Score = 187 bits (206), Expect = 3e-42 Identities = 286/399 (72%), Gaps = 8/399 (2%) Strand=Plus/Minus Query 160876 TTTTGTAACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGTCCTG 160935 ||||||| || | | ||||||| || || | ||||| |||| ||||| || || || Sbjct 4250769 TTTTGTAGCTAGATAACCAGCATTGAAAATCATCTTTACATTGGATGGTTTGGTGTTTTG 4250710 Query 160936 ATGATTCCCTGCTTGCTCG-CTGCTACCATTTGT-TTCATCATTGCCTTCGTTGGTGCTC 160993 ||||| || | ||| | | | || || | ||| || || ||||| ||| ||| ||| | Sbjct 4250709 ATGAT-CCTTACTTTATTGACCGCAACT-TCTGTATTTATTATTGCTTTCATTGCTGCAC 4250652 Query 160994 CCCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTATGGAAACA 161053 | || | || || || || ||||||||||| || |||| || | | ||||||| || Sbjct 4250651 CTCCAATAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTTTACTTTATGGAAGCA 4250592 Query 161054 ACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCA 161113 | || || | | |||| |||| ||| ||||| ||||| ||| ||||||| ||||| | Sbjct 4250591 ATATTATTTTTTGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCTA 4250532 Query 161114 TCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTG 161173 | |||||||| | | | || |||||| | ||||| |||||||||| | || ||| Sbjct 4250531 TATGGGAAGCGACTTCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTG 4250472 Query 161174 TGTTCCACTTCCTGATTGGCAT--CTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTA 161231 | | |||||| | |||| | || |||| || |||||||||||||||||||| || Sbjct 4250471 TTCTACACTTCTTACTTGGTGTAGCT-TGCT-ACGTGGGTCGTGAGTGGGAACTTAGTTT 4250414 Query 161232 CCGTCTGGGAATGCGTCCTTGGATTTGCGTAGCATACTC 161270 |||||||| || || ||||||||| || ||||| || Sbjct 4250413 TCGTCTGGGTATACGCCCTTGGATTGTTGTTGCATATTC 4250375 >seq13 Length=34719086 Score = 179 bits (198), Expect = 4e-40 Identities = 286/404 (71%), Gaps = 8/404 (2%) Strand=Plus/Plus Query 160876 TTTTGTAACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGTCCTG 160935 ||||||| || | | ||||||| || || | ||||| |||| ||||| || || || Sbjct 21513206 TTTTGTAGCTAGATAACCAGCATTGAAAATCATCTTTACATTGGATGGTTTGGTGTTTTG 21513265 Query 160936 ATGATTCCCTGCTTGCTCG-CTGCTACCATTTGT-TTCATCATTGCCTTCGTTGGTGCTC 160993 ||||| || | ||| | | | || || | ||| || || ||||| ||| || ||| | Sbjct 21513266 ATGAT-CCTTACTTTATTGACCGCAACT-TCTGTATTTATTATTGCTTTCATTRCTGCAC 21513323 Query 160994 CCCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTATGGAAACA 161053 | || | || || || || ||||||||||| || |||| || | | ||||||| || Sbjct 21513324 CTCCAATAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTTTACTTTATGGAAGCA 21513383 Query 161054 ACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCA 161113 | || || | | |||| |||| ||| ||||| ||||| ||| ||||||| ||||| | Sbjct 21513384 ATATTATTTTTTGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCTA 21513443 Query 161114 TCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTG 161173 | |||||||| | | | || |||||| | ||||| |||||||||| | || ||| Sbjct 21513444 TATGGGAAGCGACTTCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTG 21513503 Query 161174 TGTTCCACTTCCTGATTG--GCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTA 161231 | | |||||| | ||| | | || ||| ||| |||||||||||||||||||| || Sbjct 21513504 TTCTACACTTCTTACTTGGTGTAGCT-TGC-TACGTGGGTCGTGAGTGGGAACTTAGTTT 21513561 Query 161232 CCGTCTGGGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTC 161275 |||||| || || ||||||||| || ||||| || ||| Sbjct 21513562 TYKTCTGGGTATACGCCCTTGGATTGTTGTTGCATATTCARCTC 21513605 >seq376 Length=2445099 Score = 89.7 bits (98), Expect = 6e-13 Identities = 129/181 (71%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 160876 TTTTGTAACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGTCCTG 160935 |||||||||||| | || ||||| || ||||| ||||| |||| ||||| || || || Sbjct 1076006 TTTTGTAACTGGATAACYAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1076065 Query 160936 ATGATTCCCTGCTTGCTCG-CTGCTACCATTTGT-TTCATCATTGCCTTCGTTGGTGCTC 160993 |||| ||||| ||| | | | | | | | ||| || || ||||| ||| ||| ||| | Sbjct 1076066 ATGA-TCCCTACTTTATTGACCKC-AACTTCTGTATTTATTATTGCTTTCATTGCTGCAC 1076123 Query 160994 CCCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTATGGAAACA 161053 | || || || || || |||| |||||| || |||| || | | ||||||| || Sbjct 1076124 CTYYGGTAGATATTGATGGTATTCRTGAACCTGTTTCTGGATCTTTACTTTATGGAARCA 1076183 Query 161054 A 161054 | Sbjct 1076184 A 1076184 >seq1185 Length=2433339 Score = 86.0 bits (94), Expect = 7e-12 Identities = 127/180 (71%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 160876 TTTTGTAACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGTCCTG 160935 |||||||||||| | || ||||| || ||||| ||||| |||| ||||| || || || Sbjct 1074383 TTTTGTAACTGGATAACYAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1074442 Query 160936 ATGATTCCCTGCTTGCTCGCTGCTACCATTTGT-TTCATCATTGCCTTCGTTGGTGCTCC 160994 |||| ||||| ||| | | | | | ||| || || ||||| ||| ||| ||| || Sbjct 1074443 ATGA-TCCCTACTTTATTGACCTCAACTTCTGTATTTATTATTGCTTTCATTGCTGCACC 1074501 Query 160995 CCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAA 161054 || || || || || |||| |||||| || |||| || | | ||||||| ||| Sbjct 1074502 TTYGGTAGATATTGATGGTATTCRTGAACCTGTTTCTGGATCTTTACTTTATGGAARCAA 1074561 >seq14 Length=29158859 Score = 86.0 bits (94), Expect = 7e-12 Identities = 127/180 (71%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 160876 TTTTGTAACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGTCCTG 160935 |||||||||||| | || ||||| || ||||| ||||| |||| ||||| || || || Sbjct 26472196 TTTTGTAACTGGATAACYAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 26472255 Query 160936 ATGATTCCCTGCTTGCTCGCTGCTACCATTTGT-TTCATCATTGCCTTCGTTGGTGCTCC 160994 |||| ||||| ||| | | | | | ||| || || ||||| ||| ||| ||| || Sbjct 26472256 ATGA-TCCCTACTTTATTGACCTCAACTTCTGTATTTATTATTGCTTTCATTGCTGCACC 26472314 Query 160995 CCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAA 161054 || || || || || |||| |||||| || |||| || | | ||||||| ||| Sbjct 26472315 TTYGGTAGATATTGATGGTATTCRTGAACCTGTTTCTGGATCTTTACTTTATGGAARCAA 26472374 >seq12 Length=31678690 Score = 84.2 bits (92), Expect = 2e-11 Identities = 123/172 (72%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 162960 TACGACTTTGTATCTCAAGAAGTTCGTGCGGCAGAAGACCCTGAGTTT-GAGACGTTCTA 163018 || ||||| | ||| | || | | ||| | ||||| ||||| ||| ||||| ||||| Sbjct 15529678 TATGACTTCATTTCTTAGAAATTYCATGCAACGGAAGATCCTGAATTTTGAGACTTTCTA 15529619 Query 163019 TACAAAGAACATTCTTCTGAATGAAGGACTTCGAGCATGGTTAGCACCAGTGGACCAACC 163078 || || || ||||| | | |||||| ||| || ||| | ||| | || ||||| Sbjct 15529618 CACCAAAAATATTCTCTTAAGTGAAGGTATTCATGCTTGGATGGCARCTTAAGATCAACC 15529559 Query 163079 TCATGAGAACTTTGTGTTCCCTGAAGAGGTCTTGCCAAGAGGCAACGCTCTA 163130 |||||| ||| || | |||||||||||||| || || | || ||| ||||| Sbjct 15529558 TCATGAAAACCTTATATTCCCTGAAGAGGTTTTACCCCGTGG-AACTCTCTA 15529508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547738634603160