Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq1241 176 1e-39 seq13 170 6e-38 seq376 116 1e-21 seq1185 113 1e-20 seq14 113 1e-20 seq629 87.8 5e-13 seq8 87.8 5e-13 >seq1241 Length=4265459 Score = 176 bits (194), Expect = 1e-39 Identities = 256/362 (71%), Gaps = 0/362 (0%) Strand=Plus/Plus Query 18423 GAATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGT 18482 ||||| |||||| |||||| ||||| ||||| || | | ||||||||||||| | || Sbjct 4250375 GAATATGCAACAACAATCCAAGGGCGTATACCCAGACGAAAACTAAGTTCCCACTCACGA 4250434 Query 18483 CCCATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCG 18542 |||| ||| || | || | | ||||| | ||||| || | ||| || || || Sbjct 4250435 CCCACGTAGCAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCA 4250494 Query 18543 TTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATT 18602 || |||||||| || || | | | |||||||| || ||||| ||||| | ||| || Sbjct 4250495 TTGTATAACCATTCATCAACAGAAGTCGCTTCCCATATAGGGTAAAAGTGCAAACCTATA 4250554 Query 18603 GCGTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCT 18662 || ||| | || | || || | | || || ||| ||||||| ||||| | ||| Sbjct 4250555 GCTGCAGAAGTAGGAATAATGGCACAAAAAATAATATTGCTTCCATAAAGTAAAGATCCA 4250614 Query 18663 GAGACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAA 18722 || ||||| |||||||||||||| || || | ||||| ||||||| || ||||| | | Sbjct 4250615 GAAACAGGTTCACGAATACCATCAATATCTATTGGAGGTGCAGCAATGAAAGCAATAATA 4250674 Query 18723 AATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAG 18782 ||| | | || |||||| || | | | ||||||| | || |||||||| || | ||| Sbjct 4250675 AATACAGAAGTTGCGGTCAATAAAGTAAGGATCATCAAAACACCAAACCATCCAATGTAA 4250734 Query 18783 AG 18784 || Sbjct 4250735 AG 4250736 >seq13 Length=34719086 Score = 170 bits (188), Expect = 6e-38 Identities = 254/362 (70%), Gaps = 0/362 (0%) Strand=Plus/Minus Query 18423 GAATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGT 18482 ||||| |||||| |||||| ||||| ||||| || | ||||||||||||| | || Sbjct 21513600 GAATATGCAACAACAATCCAAGGGCGTATACCCAGAMRAAAACTAAGTTCCCACTCACGA 21513541 Query 18483 CCCATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCG 18542 |||| ||| || | || | | ||||| | ||||| || | ||| || || || Sbjct 21513540 CCCACGTAGCAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCA 21513481 Query 18543 TTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATT 18602 || |||||||| || || | | | |||||||| || ||||| ||||| | ||| || Sbjct 21513480 TTGTATAACCATTCATCAACAGAAGTCGCTTCCCATATAGGGTAAAAGTGCAAACCTATA 21513421 Query 18603 GCGTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCT 18662 || ||| | || | || || | | || || ||| ||||||| ||||| | ||| Sbjct 21513420 GCTGCAGAAGTAGGAATAATGGCACAAAAAATAATATTGCTTCCATAAAGTAAAGATCCA 21513361 Query 18663 GAGACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAA 18722 || ||||| |||||||||||||| || || | ||||| |||| || || ||||| | | Sbjct 21513360 GAAACAGGTTCACGAATACCATCAATATCTATTGGAGGTGCAGYAATGAAAGCAATAATA 21513301 Query 18723 AATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAG 18782 ||| | | || |||||| || | | | ||||||| | || |||||||| || | ||| Sbjct 21513300 AATACAGAAGTTGCGGTCAATAAAGTAAGGATCATCAAAACACCAAACCATCCAATGTAA 21513241 Query 18783 AG 18784 || Sbjct 21513240 AG 21513239 Score = 84.2 bits (92), Expect = 7e-12 Identities = 117/163 (72%), Gaps = 6/163 (4%) Strand=Plus/Plus Query 18630 GATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATC--TA 18687 || || || ||||||||||| ||||| ||| || | ||| |||||||||||||| || Sbjct 21517322 GAAATAATATTGTTTCCATAAAGTAAAAATCCAGAAATAGGTTCACGAATACCATCAATA 21517381 Query 18688 TGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTG 18747 | ||| |||| ||||||| || ||||| | |||| | || || || || | | Sbjct 21517382 TCTCA----GAGGTGCAGCAATGAAAGCAATAATAAATACAAAAGTTGTGGGCAATAAAG 21517437 Query 18748 CAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTT 18790 ||||||| | | || |||||||| || | ||| || ||||| Sbjct 21517438 TAGGGATCCTCAAAACACCAAACCATCCAATGTAAAGACGGTT 21517480 >seq376 Length=2445099 Score = 116 bits (128), Expect = 1e-21 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 18639 TTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCAACGGGA 18698 ||| ||||||| ||||| | ||| || ||||| ||| |||||||||| || || || | Sbjct 1076184 TTGYTTCCATAAAGTAAAGATCCAGAAACAGGTTCAYGAATACCATCAATATCTACCRRA 1076125 Query 18699 GGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATA 18758 || ||||||| || ||||| | |||| | | || || ||| || | | ||||||||| Sbjct 1076124 GGTGCAGCAATGAAAGCAATAATAAATACAGAAGTTGMGGTCAATAAAGTAGGGATCATC 1076065 Query 18759 AGTACCCCAAACCACCCCACGTAGAGGCGGTTGTTTGTACTCGTAACCCAGTCACATAA 18817 | || |||||||| || | ||| || ||||| | || || || | ||||| ||| || Sbjct 1076064 AAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTRGTTATCCAGTTACAAAA 1076006 >seq1185 Length=2433339 Score = 113 bits (124), Expect = 1e-20 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 18639 TTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCAACGGGA 18698 ||| ||||||| ||||| | ||| || ||||| ||| |||||||||| || || || | Sbjct 1074561 TTGYTTCCATAAAGTAAAGATCCAGAAACAGGTTCAYGAATACCATCAATATCTACCRAA 1074502 Query 18699 GGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATA 18758 || ||||||| || ||||| | |||| | | || || ||| || | | ||||||||| Sbjct 1074501 GGTGCAGCAATGAAAGCAATAATAAATACAGAAGTTGAGGTCAATAAAGTAGGGATCATC 1074442 Query 18759 AGTACCCCAAACCACCCCACGTAGAGGCGGTTGTTTGTACTCGTAACCCAGTCACATAA 18817 | || |||||||| || | ||| || ||||| | || || || | ||||| ||| || Sbjct 1074441 AAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTRGTTATCCAGTTACAAAA 1074383 >seq14 Length=29158859 Score = 113 bits (124), Expect = 1e-20 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 18639 TTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCAACGGGA 18698 ||| ||||||| ||||| | ||| || ||||| ||| |||||||||| || || || | Sbjct 26472374 TTGYTTCCATAAAGTAAAGATCCAGAAACAGGTTCAYGAATACCATCAATATCTACCRAA 26472315 Query 18699 GGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATA 18758 || ||||||| || ||||| | |||| | | || || ||| || | | ||||||||| Sbjct 26472314 GGTGCAGCAATGAAAGCAATAATAAATACAGAAGTTGAGGTCAATAAAGTAGGGATCATC 26472255 Query 18759 AGTACCCCAAACCACCCCACGTAGAGGCGGTTGTTTGTACTCGTAACCCAGTCACATAA 18817 | || |||||||| || | ||| || ||||| | || || || | ||||| ||| || Sbjct 26472254 AAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTRGTTATCCAGTTACAAAA 26472196 >seq629 Length=2291386 Score = 87.8 bits (96), Expect = 5e-13 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 18066 TTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATA 18125 ||||| || |||||||| |||||||| | || ||||| || ||||||||||| || ||| Sbjct 2029933 TTGTTCAAACTAGCATATTGGAAGATCAATCAGCCAAAATAACCATGAGCCGCTACGATA 2029992 Query 18126 TTATACGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTT 18166 || || || ||||| ||||| |||||| | || || || || Sbjct 2029993 TTGTAGGTTTCTTCCTCTTGACCAAATCTGTAACCGTAATT 2030033 >seq8 Length=29603939 Score = 87.8 bits (96), Expect = 5e-13 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 18066 TTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATA 18125 ||||| || |||||||| |||||||| | || ||||| || ||||||||||| || ||| Sbjct 4092018 TTGTTCAAACTAGCATATTGGAAGATCAATCAGCCAAAATAACCATGAGCCGCTACGATA 4091959 Query 18126 TTATACGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTT 18166 || || || ||||| ||||| |||||| | || || || || Sbjct 4091958 TTGTAGGTTTCTTCCTCTTGACCAAATCTGTAACCGTAATT 4091918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151316152070594