Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq9 262 5e-65 seq672 237 2e-57 seq1241 150 2e-31 seq13 143 3e-29 seq1081 107 2e-18 seq629 100 4e-16 seq8 100 4e-16 seq12 95.1 2e-14 seq376 86.0 8e-12 seq1185 82.4 1e-10 seq14 82.4 1e-10 >seq9 Length=33717675 Score = 262 bits (290), Expect = 5e-65 Identities = 381/536 (71%), Gaps = 2/536 (0%) Strand=Plus/Minus Query 101958 GAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAGACCAGAAACGGTT 102017 |||||| ||||| | ||||| ||| |||| | ||||||||| ||||| || |||| Sbjct 26714822 GAAATGTAACCAACGTTTATTGGAAAAAGCAACCCTAAAGATTTGGGACCAAAAGYGGTT 26714763 Query 102018 TGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCTTTGAAAGTGTT 102077 | || |||||||||||||| ||||| |||| || | | ||| | ||| || || Sbjct 26714762 AGTGGTGACCATTGAATAAGTTTCTTCAACTTGAGTTGGGTTGAAACCACGGAATGTATT 26714703 Query 102078 TGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGATTGCTGACAG 102137 ||| |||||||||| || | | ||| || | | | ||||||| || || | | Sbjct 26714702 TGCACCATCACCATCTCCAAATAAAGTATTTTTTATGATAGCACCGTGAATAGCGCATAA 26714643 Query 102138 CAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAGCGTCCAGTT 102197 || || | |||| | || |||| ||||||||||| |||||||| || ||||| || Sbjct 26714642 CAAAGCAGCGCCCAACACCCCAACAACTCCCATCATATGAAATGGGTTTAGTGTCCAATT 26714583 Query 102198 ATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAACGAGGGCGC 102257 ||| || ||||| | ||||| | ||||| |||||| ||||| |||||||| || || Sbjct 26714582 ATGAAACCCCTGRAAAAAGAGGATGAATCAAAATATAGCTGCTACACCAAAACTAGGTGC 26714523 Query 102258 AAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGACAAAAACAGCGAT 102317 |||||||||||| ||||| || | ||||| || || || ||| || |||||||| || Sbjct 26714522 AAAGAACCAACTAGACTGACCTAACGGATAAATTAGGAATACAGAAAC-AAAACAGCAAT 26714464 Query 102318 AGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAATTAACCTAGCCAACTCGAA 102377 || || ||||| ||||| ||||| | || | | | ||| | | ||| | ||| || Sbjct 26714463 TGGACCGGAGAATGCAATTGCATTACAAGGTCACAATTCAACAGATCGAGCAAGCTCAAA 26714404 Query 102378 TTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCCACAAAAGCCCAGAG 102437 |||||| | ||| ||||| || || | || || || || || || ||||||| | | || Sbjct 26714403 TTGACGTAACAT-AAACCTATTAGTTCGAAAGCGCCATGTAGTGCAACAAAAGTCTATAG 26714345 Query 102438 TCCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCTTCAGGACCCCAAAGTA 102493 | || | ||| ||| | ||||||||||| |||||||||||||| |||| Sbjct 26714344 ACTGCCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGACCCCATAGTA 26714289 >seq672 Length=1945142 Score = 237 bits (262), Expect = 2e-57 Identities = 516/768 (67%), Gaps = 35/768 (5%) Strand=Plus/Plus Query 101958 GAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAGACCAGAAACGGTT 102017 |||||| ||||| | ||||| ||| |||| | ||||||||| ||||| || |||| Sbjct 1649223 GAAATGTAACCAACGTTTATTGGAAAAAGCAACCCTAAAGATTTGGGACCAAAAGYGGTT 1649282 Query 102018 TGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCTTTGAAAGTGTT 102077 | || |||||||||||||| ||||| |||| || | | || ||| Sbjct 1649283 AGTGGTGACCATTGAATAAGTTTCTTCAACTTGAGTTGGGTTAAACCG---GAA------ 1649333 Query 102078 TGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGATTGCTGACAG 102137 || || |||||| || | | ||| || | | | ||||||| || || | | Sbjct 1649334 ---TT--TCCCCATCTCCAAATAAAGTATTTTYTATGATAGCACCGTGAATAGCGCATAA 1649388 Query 102138 CAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAGCGTCCAGTT 102197 || || | |||| | || |||| ||||||||||| |||||||| || ||||| || Sbjct 1649389 CARAGCAGCGCCCAACACCCCAACAACTCCCATCATATGAAATGGGTTTAGTGTCCAATT 1649448 Query 102198 ATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAACGAGGGCGC 102257 ||| || ||||| | ||||| | ||||| |||||| ||||| |||||||| || || Sbjct 1649449 ATGAAACCCCTGRAAAAAGAGGATGAATCAAAATATAGCTGCTACACCAAAACTAGGTGC 1649508 Query 102258 AAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGACAAAAACAGCGAT 102317 ||||||||||| ||||| || | |||| || || || ||| ||||||||||| || Sbjct 1649509 AAAGAACCAACYAGACTGACCTAAYRGATAAATTAGGAATACAGAAACAAAAACAGCAAT 1649568 Query 102318 AGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAATTAACCTAGCCAACTCGAA 102377 || || ||||| ||||| ||||| | || | | | || | | ||| | ||| || Sbjct 1649569 TGGACCGGAGAATGCAATTGCATTAYAAGGTCACAATTSAACAGATCGAGCAAGCTCAAA 1649628 Query 102378 TTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCCACAAAAGCCCAGAG 102437 |||||| | ||| ||||| || || | || || || || || || ||||||| | | || Sbjct 1649629 TTGACGTAACAT-AAACCTATTAGTCCGAAAGCGCCATGTAGTGCAACAAAAGTCTATAG 1649687 Query 102438 TCCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCTTCAGGACCCCAAAGT-AGAA 102496 | || | ||| ||| | ||||||||||| |||||||||||||| ||| | || Sbjct 1649688 ACTGCCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGACCCCATAGTAACAA 1649747 Query 102497 GAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTGTAAGGAAATTAGCAC 102556 |||| | || | | | | ||| || || || || ||| | | | ||| ||| | Sbjct 1649748 CAAGA-AGTGCGCTAAACTATTAGCCGGAGTGGAAACTGCATCACTTAAGAAGTTAAAGC 1649806 Query 102557 CTTCAAGGTAACTAGACGCAAGCCCGTGGGTATACCAGGAAGTAGCAAACGTCGTGCCAG 102616 |||| | || | || | | ||||||||||| || || || | || Sbjct 1649807 CTTCCAAATAGGAACTTGCTAATCTATGGGTATACCA--AATTA--AA------TTCC-- 1649854 Query 102617 TAAGCCAGCCCCCAATTGCGAGATAAGCAGTGGGAAAAAGAAGTAGTCCAGACCAACCCA 102676 | ||| ||||| | || | ||| ||| ||||| || | | | | ||||||||| | Sbjct 1649855 --AACCAACCCCCTAAAGCRAAATAGGCACAAGGAAAGAGTAATTGGCTAGACCAACCTA 1649912 Query 102677 CAAAGACAAAGCGATCTCGTT--TAATCCAGTCATCCAGGATGTCAAA 102722 |||| || ||||| | || || ||| ||||||||||| || ||||| Sbjct 1649913 CAAAAACGAAGCGGT-TCCTTCGTAA-CCAGTCATCCATAATATCAAA 1649958 >seq1241 Length=4265459 Score = 150 bits (166), Expect = 2e-31 Identities = 259/368 (70%), Gaps = 10/368 (3%) Strand=Plus/Plus Query 103763 GAGTATGCGACACAGATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGT 103822 || ||||| ||| ||||| ||||| || |||||||| | | |||||||||||| Sbjct 4250375 GAATATGCAACAACAATCCAAGGGCGTATACCCAGACGAAAACTAAGTTCCCACTCACGA 4250434 Query 103823 CCCATATATGCATAGATGC--CAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCAC 103880 |||| || ||| || | | ||| | |||||| | || | || | ||||||||| Sbjct 4250435 CCCACGTA-GCA-AGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCAC 4250492 Query 103881 CGTTATACAGCCACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAA 103940 | || || | ||| ||||||| ||| | |||||||| || || || ||||| | ||| | Sbjct 4250493 CATTGTATAACCATTCATCAACAGAAGTCGCTTCCCATATAGGGTAAAAGTGCAAACCTA 4250552 Query 103941 TTGCGTTGGAGGAG--GGAACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGA 103998 | || || || || |||| || |||| | | || || ||| | || || | | || Sbjct 4250553 TAGC--TGCAGAAGTAGGAATAATGGCACAAAAAATAATATTGCTTCCATAAAGTAAAGA 4250610 Query 103999 ACCAGCGACGGGTTCACGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAAC 104058 |||| || ||||||||||| || || ||||| | |||||||| || | |||||||| Sbjct 4250611 TCCAGAAACAGGTTCACGAATACCATCAATATCTATTGGAGGTGCAGCAATGAAAGCAAT 4250670 Query 104059 GATGAA-GCAGATGGTTGCCGCCAACAGAGTTGGGATCATCAGCACACCGAACCAACCAA 104117 || || |||| ||||| | ||| | ||| ||||||||| ||||| ||||| |||| Sbjct 4250671 AATAAATACAGA-AGTTGCGGTCAATAAAGTAAGGATCATCAAAACACCAAACCATCCAA 4250729 Query 104118 CATAGAGA 104125 || ||| Sbjct 4250730 TGTAAAGA 4250737 >seq13 Length=34719086 Score = 143 bits (158), Expect = 3e-29 Identities = 259/373 (69%), Gaps = 10/373 (3%) Strand=Plus/Minus Query 103758 GAGCAGAGTATGCGACACAGATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACT 103817 ||| || ||||| ||| ||||| ||||| || |||||| | | |||||||| Sbjct 21513605 GAGYTGAATATGCAACAACAATCCAAGGGCGTATACCCAGAMRAAAACTAAGTTCCCACT 21513546 Query 103818 CACGTCCCATATATGCATAGATGC--CAATGAGGAAGTGGAATACTACAAGTTGGAAAGG 103875 |||| |||| || ||| || | | ||| | |||||| | || | || | |||| Sbjct 21513545 CACGACCCACGTA-GCA-AGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGG 21513488 Query 103876 ACCACCGTTATACAGCCACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAG 103935 |||||| || || | ||| ||||||| ||| | |||||||| || || || ||||| | Sbjct 21513487 ACCACCATTGTATAACCATTCATCAACAGAAGTCGCTTCCCATATAGGGTAAAAGTGCAA 21513428 Query 103936 ACCAATTGCGTTGGAGGAG--GGAACAACTGCACCAGAGATGATGTTGTTACCGTACATG 103993 ||| || || || || || |||| || |||| | | || || ||| | || || | Sbjct 21513427 ACCTATAGC--TGCAGAAGTAGGAATAATGGCACAAAAAATAATATTGCTTCCATAAAGT 21513370 Query 103994 AGTGAACCAGCGACGGGTTCACGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAA 104053 | || |||| || ||||||||||| || || ||||| | |||||||| | | |||| Sbjct 21513369 AAAGATCCAGAAACAGGTTCACGAATACCATCAATATCTATTGGAGGTGCAGYAATGAAA 21513310 Query 104054 GCAACGATGAA-GCAGATGGTTGCCGCCAACAGAGTTGGGATCATCAGCACACCGAACCA 104112 |||| || || |||| ||||| | ||| | ||| ||||||||| ||||| ||||| Sbjct 21513309 GCAATAATAAATACAGA-AGTTGCGGTCAATAAAGTAAGGATCATCAAAACACCAAACCA 21513251 Query 104113 ACCAACATAGAGA 104125 |||| || ||| Sbjct 21513250 TCCAATGTAAAGA 21513238 Score = 95.1 bits (104), Expect = 2e-14 Identities = 140/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 102815 TCCGAAGTTGGGTATGCCACGCAGGTCAGAACA-AAACCTGCTTCTAGTTGATCGTCATC 102873 || ||||||||||| | || || ||||| ||| || ||| |||| | ||| | ||| || Sbjct 23551782 TCTGAAGTTGGGTACGATACACAAGTCAGCACATAACCCTCCTTC-ATTTGGTTGTCGTC 23551840 Query 102874 CAGAAAGGATTGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACAAGTAGA 102933 || || || ||| ||||| || | ||||||| | | ||| || ||||| ||||| Sbjct 23551841 GAGGAATGAACCATCGGACTGATCCACTGAACCCGATGCCAGCTTCCCTGCACAGGTAGA 23551900 Query 102934 ACACGCACCAGCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCGTCTAG 102993 || || ||||| | || ||||| ||||| ||||| || || | ||||| || |||| Sbjct 23551901 GCATGCCCCAGCCCTGCAAGAATATGGCAGTTCAACTCCAGCATTCTCAGCTGCATCTAA 23551960 Query 102994 AATATATTGATCATCC 103009 || || ||||||| Sbjct 23551961 GATGTAGCAATCATCC 23551976 >seq1081 Length=585217 Score = 107 bits (118), Expect = 2e-18 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 102070 AAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGATT 102129 || || ||||| ||||||||||||| | | ||| | || ||||| ||||| || || Sbjct 578715 AATGTATTTGCACCATCACCATCTTCAAATAAAGTATCTTCTACAGTAACACCATGAATA 578774 Query 102130 GCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAGC 102189 | | | || || |||| | || |||| | ||||||||| ||| ||| | Sbjct 578775 GTGCATAAYAGAGCAGTGCCCAACACTCCAACAACTCTCATCATATGAAATRAGTTCAAT 578834 Query 102190 GTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAAC 102249 || || ||||| || ||||| | ||||| | ||||| |||||| ||||| |||| ||| Sbjct 578835 GTTCAATTATGAAACCCCTGGAAAAAGAGGATGAATCAAAATATAGCTGCCACACGAAAA 578894 Query 102250 GAGGGCGCAAAGAACCAACTGGACT 102274 | |||||||||||||||| |||| Sbjct 578895 TTGAGCGCAAAGAACCAACTAGACT 578919 >seq629 Length=2291386 Score = 100 bits (110), Expect = 4e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 103403 GAGTTGTTGAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACG 103462 |||||||| || || |||||||||||||| | || || ||||||||||| |||||| Sbjct 2029930 GAGTTGTTCAAACTAGCATATTGGAAGATCAATCAGCCAAAATAACCATGAGCCGCTACG 2029989 Query 103463 ATGTTGTATGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCA 103522 || ||||| || ||||||||||| || || ||||||| || || | ||||| |||| Sbjct 2029990 ATATTGTAGGTTTCTTCCTCTTGACCAAATCTGTAACCGTAATTAGCATATTCATTTTCT 2030049 Query 103523 GTCGT 103527 || || Sbjct 2030050 GTGGT 2030054 >seq8 Length=29603939 Score = 100 bits (110), Expect = 4e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 103403 GAGTTGTTGAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACG 103462 |||||||| || || |||||||||||||| | || || ||||||||||| |||||| Sbjct 4092021 GAGTTGTTCAAACTAGCATATTGGAAGATCAATCAGCCAAAATAACCATGAGCCGCTACG 4091962 Query 103463 ATGTTGTATGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCA 103522 || ||||| || ||||||||||| || || ||||||| || || | ||||| |||| Sbjct 4091961 ATATTGTAGGTTTCTTCCTCTTGACCAAATCTGTAACCGTAATTAGCATATTCATTTTCT 4091902 Query 103523 GTCGT 103527 || || Sbjct 4091901 GTGGT 4091897 >seq12 Length=31678690 Score = 95.1 bits (104), Expect = 2e-14 Identities = 109/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 101710 AGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTGATCG 101769 |||| ||| || | || || ||||||||||| |||| || ||||||||| |||||||| Sbjct 15529509 AGAGAGTT-CCACGGGGTAAAACCTCTTCAGGGAATATAAGGTTTTCATGAGGTTGATCT 15529567 Query 101770 ACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAGAACGTC 101829 | ||||| ||| ||| | | ||||||| | || || || || || |||||||| ||| Sbjct 15529568 TAAGYTGCCATCCAAGCATGAATACCTTCACTTAAGAGAATATTTTTGGTGTAGAAAGTC 15529627 Query 101830 TC-GAACTCTGGATCTTCTGCTGC 101852 || || || |||||||| | ||| Sbjct 15529628 TCAAAATTCAGGATCTTCCGTTGC 15529651 >seq376 Length=2445099 Score = 86.0 bits (94), Expect = 8e-12 Identities = 100/135 (74%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 103997 GAACCAGCGACGGGTTCACGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCA 104056 || |||| || |||||| |||| || || ||||| || |||||| || | ||||||| Sbjct 1076166 GATCCAGAAACAGGTTCAYGAATACCATCAATATCTACCRRAGGTGCAGCAATGAAAGCA 1076107 Query 104057 ACGATGAAG-CAGATGGTTGCCGCCAACAGAGTTGGGATCATCAGCACACCGAACCAACC 104115 | || || |||| | ||| | ||| | ||| |||||||||| ||||| ||||| || Sbjct 1076106 ATAATAAATACAGAAG-TTGMGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCC 1076048 Query 104116 AACATAGAGACGGTT 104130 || || |||||||| Sbjct 1076047 AATGTAAAGACGGTT 1076033 >seq1185 Length=2433339 Score = 82.4 bits (90), Expect = 1e-10 Identities = 100/135 (74%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 103997 GAACCAGCGACGGGTTCACGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCA 104056 || |||| || |||||| |||| || || ||||| || |||||| || | ||||||| Sbjct 1074543 GATCCAGAAACAGGTTCAYGAATACCATCAATATCTACCRAAGGTGCAGCAATGAAAGCA 1074484 Query 104057 ACGATGAAG-CAGATGGTTGCCGCCAACAGAGTTGGGATCATCAGCACACCGAACCAACC 104115 | || || |||| | ||| | ||| | ||| |||||||||| ||||| ||||| || Sbjct 1074483 ATAATAAATACAGAAG-TTGAGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCC 1074425 Query 104116 AACATAGAGACGGTT 104130 || || |||||||| Sbjct 1074424 AATGTAAAGACGGTT 1074410 >seq14 Length=29158859 Score = 82.4 bits (90), Expect = 1e-10 Identities = 100/135 (74%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 103997 GAACCAGCGACGGGTTCACGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCA 104056 || |||| || |||||| |||| || || ||||| || |||||| || | ||||||| Sbjct 26472356 GATCCAGAAACAGGTTCAYGAATACCATCAATATCTACCRAAGGTGCAGCAATGAAAGCA 26472297 Query 104057 ACGATGAAG-CAGATGGTTGCCGCCAACAGAGTTGGGATCATCAGCACACCGAACCAACC 104115 | || || |||| | ||| | ||| | ||| |||||||||| ||||| ||||| || Sbjct 26472296 ATAATAAATACAGAAG-TTGAGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCC 26472238 Query 104116 AACATAGAGACGGTT 104130 || || |||||||| Sbjct 26472237 AATGTAAAGACGGTT 26472223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633503693431080