Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq1241 116 1e-21 seq13 111 5e-20 seq629 98.7 3e-16 seq8 98.7 3e-16 >seq1241 Length=4265459 Score = 116 bits (128), Expect = 1e-21 Identities = 248/365 (68%), Gaps = 4/365 (1%) Strand=Plus/Plus Query 22059 GAGTACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGT 22118 || || ||||||| ||||| || | || || || ||| | |||||||||||||| || Sbjct 4250375 GAATATGCAACAACAATCCAAGGGCGTATACCCAGACGAAAACTAAGTTCCCACTCACGA 4250434 Query 22119 CCCATGTAAGCAA-AGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCC 22177 |||| || ||||| || |||| | |||||| | || | || | | ||||| || Sbjct 4250435 CCCACGT-AGCAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACC 4250493 Query 22178 GTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGAT 22237 ||||| | ||||||||||| | || |||||||| || ||||| ||||| | || || Sbjct 4250494 ATTGTATAACCATTCATCAACAGAAGTCGCTTCCCATATAGGGTAAAAGTGCAAACCTAT 4250553 Query 22238 GGCATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCC 22297 || | | |||| | ||| | | || || ||| | ||||| | | || || Sbjct 4250554 AGCTGCAGAAGTAGGAATAATGGCACAAAAAATAATATTGCTTCCATAAAGTAAAGATCC 4250613 Query 22298 AGCGACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAAT 22357 || || ||||| || || ||||| || || | || ||||| ||| || || ||||| Sbjct 4250614 AGAAACAGGTTCACGAATACCATCAATATCTATTGGAGGTGCAGCAATGAAAGCAATAAT 4250673 Query 22358 AAAACAAGTTGTAGCGG-CAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACAT 22416 ||| || || |||| ||| | | | || ||||| | || || |||||||| | | Sbjct 4250674 AAATACAGAAGTTGCGGTCAATAAAGTAAGG-ATCATCAAAACACCAAACCATCCAATGT 4250732 Query 22417 AAAGA 22421 ||||| Sbjct 4250733 AAAGA 4250737 >seq13 Length=34719086 Score = 111 bits (122), Expect = 5e-20 Identities = 248/370 (67%), Gaps = 4/370 (1%) Strand=Plus/Minus Query 22054 GAGCAGAGTACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACT 22113 ||| || || ||||||| ||||| || | || || || | | ||||||||||||| Sbjct 21513605 GAGYTGAATATGCAACAACAATCCAAGGGCGTATACCCAGAMRAAAACTAAGTTCCCACT 21513546 Query 22114 CTCGTCCCATGTAAGCAAAG-ACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGA 22172 | || |||| ||| |||| || |||| | |||||| | || | || | | ||| Sbjct 21513545 CACGACCCACGTA-GCAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGA 21513487 Query 22173 CCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGT 22232 || || ||||| | ||||||||||| | || |||||||| || ||||| ||||| | Sbjct 21513486 CCACCATTGTATAACCATTCATCAACAGAAGTCGCTTCCCATATAGGGTAAAAGTGCAAA 21513427 Query 22233 CCGATGGCATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGG 22292 || || || | | |||| | ||| | | || || ||| | ||||| | | Sbjct 21513426 CCTATAGCTGCAGAAGTAGGAATAATGGCACAAAAAATAATATTGCTTCCATAAAGTAAA 21513367 Query 22293 GAGCCAGCGACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCG 22352 || |||| || ||||| || || ||||| || || | || ||||| || || || Sbjct 21513366 GATCCAGAAACAGGTTCACGAATACCATCAATATCTATTGGAGGTGCAGYAATGAAAGCA 21513307 Query 22353 ATAATAAAACAAGTTGTAGCGG-CAAGGAGGCACGGAATCATAAGGACTCCGAACCATCC 22411 |||||||| || || |||| ||| | | | || ||||| | || || |||||||| Sbjct 21513306 ATAATAAATACAGAAGTTGCGGTCAATAAAGTAAGG-ATCATCAAAACACCAAACCATCC 21513248 Query 22412 TACATAAAGA 22421 | |||||| Sbjct 21513247 AATGTAAAGA 21513238 >seq629 Length=2291386 Score = 98.7 bits (108), Expect = 3e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 21681 AAGAAATGAAGACTACGGGAATTATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAA 21740 ||||| || | | | | || || || || ||||||||||||||||| | | |||||| Sbjct 2029912 AAGAAGTGTAAAGAATGAGAGTTGTTCAAACTAGCATATTGGAAGATCAATCAGCCAAAA 2029971 Query 21741 TAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTCCTCTTGACCAAACTTGTAACCATAG 21800 || || ||||| || || |||||||| || ||||||||||||||||| ||||||| || Sbjct 2029972 TAACCATGAGCCGCTACGATATTGTAGGTTTCTTCCTCTTGACCAAATCTGTAACCGTAA 2030031 Query 21801 TT 21802 || Sbjct 2030032 TT 2030033 >seq8 Length=29603939 Score = 98.7 bits (108), Expect = 3e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 21681 AAGAAATGAAGACTACGGGAATTATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAA 21740 ||||| || | | | | || || || || ||||||||||||||||| | | |||||| Sbjct 4092039 AAGAAGTGTAAAGAATGAGAGTTGTTCAAACTAGCATATTGGAAGATCAATCAGCCAAAA 4091980 Query 21741 TAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTCCTCTTGACCAAACTTGTAACCATAG 21800 || || ||||| || || |||||||| || ||||||||||||||||| ||||||| || Sbjct 4091979 TAACCATGAGCCGCTACGATATTGTAGGTTTCTTCCTCTTGACCAAATCTGTAACCGTAA 4091920 Query 21801 TT 21802 || Sbjct 4091919 TT 4091918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146205827988780