Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq486 109 3e-19 seq15 95.1 6e-15 >seq486 Length=229640 Score = 109 bits (120), Expect = 3e-19 Identities = 159/225 (71%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 26058 CAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAA 26117 ||| ||||||||| | || ||||| |||||||| || || | ||||| |||||||||| Sbjct 170603 CAACACTACCTTTCCGCTTGCCTCCTCCTTGATCAACATAACGAGCAGTATCATTGAAAA 170544 Query 26118 CTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTG 26177 || |||||||||||| | ||| | || ||| ||||| | | |||| | |||| Sbjct 170543 CTCGCAACATTGGAACAATGCCATTGGAGGTTCCATTTGTTCCACGAATATAACTGCCTG 170484 Query 26178 TCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCAC 26237 | | | ||| | ||| || | ||| ||||| ||||| |||| ||| | |||| Sbjct 170483 TGGCCCGAATGTTGTGGACAGAGACACCAATTCCTCCAGCTGATTTGCTGATAACAGCAC 170424 Query 26238 AATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCA 26282 | ||| | ||||| |||| |||| ||||||||| |||||| Sbjct 170423 ATTCTTTTAAGGTATCATAAATGCCTTCAATGCTATCATCTTTCA 170379 >seq15 Length=47181002 Score = 95.1 bits (104), Expect = 6e-15 Identities = 156/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 26062 ACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTT 26121 | ||||||| || || ||||| |||||||| || || | || || ||||| |||||| | Sbjct 34780755 AYTACCTTTCCTCTTGCCTCCTCCTTGATCAACATAACGGGCCGTATCATTAAAAACTCT 34780814 Query 26122 CAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGA 26181 |||||||||||| | ||| | || ||| ||||| | | |||| | ||||| | Sbjct 34780815 CAACATTGGAACAATGCCATTGGAGGTTCCATTTGTTCCACGAATATAACTGCCTGTGGC 34780874 Query 26182 TCTAATATCGTGAGCATGA-ATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAAT 26240 | || | ||| | ||| | ||| ||||| ||||| | || ||| | ||||| | Sbjct 34780875 ACGGATGTTATGAAC-TGAGACACCAATTCCTCCAGCTGACTTGCTGATAACAGCACATT 34780933 Query 26241 CTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283 || | ||||| |||| |||| ||||||||| ||||||| Sbjct 34780934 CTTTCAAGGTATCATAAATGCCTTCAATGCTATCATCTTTCAT 34780976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253036142009825