Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq672 156 5e-33 seq1241 147 3e-30 seq9 143 3e-29 seq13 141 1e-28 seq15 118 1e-21 seq8 109 6e-19 seq11 91.5 2e-13 >seq672 Length=1945142 Score = 156 bits (172), Expect = 5e-33 Identities = 395/605 (65%), Gaps = 15/605 (2%) Strand=Plus/Plus Query 123299 GCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAACACCCATCATGTGA 123358 ||||| ||||| || |||| | || | || | | || |||| |||||||| ||| Sbjct 1649369 GCACCGTGAATAGCGCATAACARAGCAGCGCCCAACACCCCAACAACTCCCATCATATGA 1649428 Query 123359 AATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATATAACGAAAGATTGCT 123418 ||||| || | ||| || || || || || | || | ||| | | ||| || ||| Sbjct 1649429 AATGGGTTTAGTGTCCAATTATGAAACCCCTGRAAAAAGAGGATGAATCAAAATATAGCT 1649488 Query 123419 GCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAGTGGATAGATCAGAAAG 123478 || ||||| || ||||| |||||||||| |||||||| |||| || || || Sbjct 1649489 GCTACACCAAAACTAGGTGCAAAGAACCAACYAGACTGACCTAAYRGATAAATTAGGAAT 1649548 Query 123479 ATGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTGCGTTGTAAGGTCTAATGCCT 123538 | | || || || || | | |||||||| | ||| || |||||| | Sbjct 1649549 ACAGAAACAAAAACAGCAATTGGACCGGAGAATGCAATTGCATTAYAAGGTCACAATTSA 1649608 Query 123539 ACAAGTCCTGCGATCTCAAATTGTCTGAGCATGAAACCTATGAGTCCAAAGACTCCATGT 123598 ||| || || | ||||||||| | | ||| |||||||| ||||| || | |||||| Sbjct 1649609 ACAGATCGAGCAAGCTCAAATTGACGTAACAT-AAACCTATTAGTCCGAAAGCGCCATGT 1649667 Query 123599 AATGCTACAAAGTTCCATAGACCTCCGAGTTGTAACCAACGAACGAATGATCCTTGTGCT 123658 | ||| ||||| || |||||| || | ||| |||||||| || |||||||||| Sbjct 1649668 AGTGCAACAAAAGTCTATAGACTGCCTAATTGACACCAACGAGTAAAATCTCCTTGTGCT 1649727 Query 123659 TCAGGTCCCCAAAGGAACATGAGACTATGACCCATTGCGTCACCAGGTGTGGAGACTGCT 123718 ||||| ||||| || |||| | || | | | | | || ||||| ||||| Sbjct 1649728 TCAGGACCCCATAGTAACAACAAGAAGTGCGCTAAACTATTAGCCGGAGTGGAAACTGCA 1649787 Query 123719 GCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGCAATACCATGTGTATACCATGAT 123778 | |||||||||| || || | ||| ||| ||| | | ||| |||||||| Sbjct 1649788 TCACTTAAGAAGTTAAAGCCTTCCAAATAGGAACTTGCTAATCTATGGGTATACCA---- 1649843 Query 123779 GTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGATACGCACAAGGCAGAAGT 123838 || | |||| |||||||| || | | | ||| |||||||| | ||| Sbjct 1649844 ------AATTAAATTCC----AACCAACCCCCTAAAGCRAAATAGGCACAAGGAAAGAGT 1649893 Query 123839 AAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTTTAACCAGTCGTCAAGAACA 123898 || | | |||||| |||| || || || || | || ||||||||| || | || | Sbjct 1649894 AATTGGCTAGACCAACCTACAAAAACGAAGCGGTTCCTTCGTAACCAGTCATCCATAATA 1649953 Query 123899 TCAAA 123903 ||||| Sbjct 1649954 TCAAA 1649958 >seq1241 Length=4265459 Score = 147 bits (162), Expect = 3e-30 Identities = 254/364 (70%), Gaps = 4/364 (1%) Strand=Plus/Plus Query 124636 TGAATAAGCAACACAGATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTGTCT 124695 |||||| |||||| |||||||| || || || | | | |||||||||| | Sbjct 4250374 TGAATATGCAACAACAATCCAAGGGCGTATACCCAGACGAAAACTAAGTTCCCACTCACG 4250433 Query 124696 TCCCATGTATGCTGAAATACCAATAAGGAAGTGGAAAATTACCAACTGATAAGGACCACC 124755 |||| ||| | | ||||| | |||||| | || | | || |||||||||||| Sbjct 4250434 ACCCACGTAGCAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACC 4250493 Query 124756 ATTATACAACCATTCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCGAT 124815 ||| || |||||||||||||||| | |||||||| || ||||| ||||| | || || Sbjct 4250494 ATTGTATAACCATTCATCAACAGAAGTCGCTTCCCATATAGGGTAAAAGTGCAAACCTAT 4250553 Query 124816 AGCGTTTGATGATGGAACAACTGCACCAGAGATGATGTTGTTACCATATAAGAAAGAACC 124875 ||| || | |||| || |||| | | || || ||| | ||||| | ||||| || Sbjct 4250554 AGCTGCAGAAGTAGGAATAATGGCACAAAAAATAATATTGCTTCCATAAAGTAAAGATCC 4250613 Query 124876 CGCTACTGGTTCTCTGATTCCGTCGATATCGACAGGAGGTGCTGCAATAAATGCAACGAT 124935 | || ||||| | || || || ||||| | |||||||| ||||| || |||| || Sbjct 4250614 AGAAACAGGTTCACGAATACCATCAATATCTATTGGAGGTGCAGCAATGAAAGCAATAAT 4250673 Query 124936 GAA-ACATGCTGCTGCTGTGAGT-AAGCATGGAATCATTAGAACACCAAACCAACCAACA 124993 || ||| | | ||| || | | ||| | || ||||| | |||||||||||| |||| Sbjct 4250674 AAATACA-GAAGTTGCGGTCAATAAAGTAAGG-ATCATCAAAACACCAAACCATCCAATG 4250731 Query 124994 TAAA 124997 |||| Sbjct 4250732 TAAA 4250735 >seq9 Length=33717675 Score = 143 bits (158), Expect = 3e-29 Identities = 319/476 (67%), Gaps = 2/476 (0%) Strand=Plus/Minus Query 123299 GCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAACACCCATCATGTGA 123358 ||||| ||||| || |||| || || | || | | || |||| |||||||| ||| Sbjct 26714662 GCACCGTGAATAGCGCATAACAAAGCAGCGCCCAACACCCCAACAACTCCCATCATATGA 26714603 Query 123359 AATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATATAACGAAAGATTGCT 123418 ||||| || | ||| || || || || || | || | ||| | | ||| || ||| Sbjct 26714602 AATGGGTTTAGTGTCCAATTATGAAACCCCTGRAAAAAGAGGATGAATCAAAATATAGCT 26714543 Query 123419 GCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAGTGGATAGATCAGAAAG 123478 || ||||| || ||||| ||||||||||| |||||||| ||||| || || || Sbjct 26714542 GCTACACCAAAACTAGGTGCAAAGAACCAACTAGACTGACCTAACGGATAAATTAGGAAT 26714483 Query 123479 ATGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTGCGTTGTAAGGTCTAATGCCT 123538 | | || || || || | | |||||||| | ||| || |||||| | | Sbjct 26714482 A-CAGAAACAAAACAGCAATTGGACCGGAGAATGCAATTGCATTACAAGGTCACAATTCA 26714424 Query 123539 ACAAGTCCTGCGATCTCAAATTGTCTGAGCATGAAACCTATGAGTCCAAAGACTCCATGT 123598 ||| || || | ||||||||| | | ||| |||||||| ||| | || | |||||| Sbjct 26714423 ACAGATCGAGCAAGCTCAAATTGACGTAACAT-AAACCTATTAGTTCGAAAGCGCCATGT 26714365 Query 123599 AATGCTACAAAGTTCCATAGACCTCCGAGTTGTAACCAACGAACGAATGATCCTTGTGCT 123658 | ||| ||||| || |||||| || | ||| |||||||| || |||||||||| Sbjct 26714364 AGTGCAACAAAAGTCTATAGACTGCCTAATTGACACCAACGAGTAAAATCTCCTTGTGCT 26714305 Query 123659 TCAGGTCCCCAAAGGAACATGAGACTATGACCCATTGCGTCACCAGGTGTGGAGACTGCT 123718 ||||| ||||| || |||| | || | | | | | || ||||| ||||| Sbjct 26714304 TCAGGACCCCATAGTAACAACAAGAAGTGCGCTAAACTATTAGCCGGAGTGGAAACTGCA 26714245 Query 123719 GCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGCAATACCATGTGTATACCA 123774 | |||||||||| | || || | ||| ||| ||| | | ||| |||||||| Sbjct 26714244 TCACTTAAGAAGTTAGAGCCTTCCAAATAGGAACTTGCTAATCTATGGGTATACCA 26714189 >seq13 Length=34719086 Score = 141 bits (156), Expect = 1e-28 Identities = 253/366 (69%), Gaps = 4/366 (1%) Strand=Plus/Minus Query 124634 GCTGAATAAGCAACACAGATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTGT 124693 | |||||| |||||| |||||||| || || || | | |||||||||| Sbjct 21513603 GYTGAATATGCAACAACAATCCAAGGGCGTATACCCAGAMRAAAACTAAGTTCCCACTCA 21513544 Query 124694 CTTCCCATGTATGCTGAAATACCAATAAGGAAGTGGAAAATTACCAACTGATAAGGACCA 124753 | |||| ||| | | ||||| | |||||| | || | | || |||||||||| Sbjct 21513543 CGACCCACGTAGCAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCA 21513484 Query 124754 CCATTATACAACCATTCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCG 124813 ||||| || |||||||||||||||| | |||||||| || ||||| ||||| | || Sbjct 21513483 CCATTGTATAACCATTCATCAACAGAAGTCGCTTCCCATATAGGGTAAAAGTGCAAACCT 21513424 Query 124814 ATAGCGTTTGATGATGGAACAACTGCACCAGAGATGATGTTGTTACCATATAAGAAAGAA 124873 ||||| || | |||| || |||| | | || || ||| | ||||| | ||||| Sbjct 21513423 ATAGCTGCAGAAGTAGGAATAATGGCACAAAAAATAATATTGCTTCCATAAAGTAAAGAT 21513364 Query 124874 CCCGCTACTGGTTCTCTGATTCCGTCGATATCGACAGGAGGTGCTGCAATAAATGCAACG 124933 || | || ||||| | || || || ||||| | |||||||| | ||| || |||| Sbjct 21513363 CCAGAAACAGGTTCACGAATACCATCAATATCTATTGGAGGTGCAGYAATGAAAGCAATA 21513304 Query 124934 ATGAA-ACATGCTGCTGCTGTGAGT-AAGCATGGAATCATTAGAACACCAAACCAACCAA 124991 || || ||| | | ||| || | | ||| | || ||||| | |||||||||||| |||| Sbjct 21513303 ATAAATACA-GAAGTTGCGGTCAATAAAGTAAGG-ATCATCAAAACACCAAACCATCCAA 21513246 Query 124992 CATAAA 124997 |||| Sbjct 21513245 TGTAAA 21513240 >seq15 Length=47181002 Score = 118 bits (130), Expect = 1e-21 Identities = 163/226 (72%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 139317 TGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGT 139376 || || ||||| ||||| ||||| || ||||| || | ||||||||||| || || || Sbjct 849748 TGAGCAGTGCAAATGTTGCTGGTAGCCTTGTCCCTCCGGATATGCTGCTCCCTTGTCTGC 849807 Query 139377 AGTGCTAATCTGTATGCAGGATTGCCTTCGCTGTC--CACTGACTGACCTACAATTCTGC 139434 | || | | | ||||| || ||| | ||| |||| || ||| | |||||| | Sbjct 849808 ATCGCCATACGCAACGCAGGCTTCCCTGAGGAGTCAACACTAAC--ACCGATAATTCTCC 849865 Query 139435 CAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCCGT 139494 | || ||| | ||||| |||| | || || || | ||| || |||||||||||||| | Sbjct 849866 CTGGCATCATCCTCTTGTACTCTTGTGAGGTGGCGAGGAAAGCCGCATGAGGACCTCCAT 849925 Query 139495 ATCCCATAGGAATACCAAACCTTTGCATACTACCTACAGCAATATC 139540 | ||||| |||| ||||||||| ||| | ||| ||| ||||||| Sbjct 849926 ACCCCATCGGAACACCAAACCTCTGCGCAGAACCAACAACAATATC 849971 Score = 84.2 bits (92), Expect = 3e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 |||||||||||||| | |||||| || |||||||| |||||||| || ||||| || || Sbjct 847631 ACACCAATAGGACCCATGCCAGGGCCACCACCTCCGTGTGGAATGCAAAATGTTTTGTGA 847690 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTG 138298 | ||| ||||| || || || || ||| || ||| ||| ||||| ||||| Sbjct 847691 AGATTGAGATGGCAAACGTCAGCTCCAATCCAACCTGGGCTTGTCAGACCAACCTG 847746 >seq8 Length=29603939 Score = 109 bits (120), Expect = 6e-19 Identities = 166/233 (71%), Gaps = 5/233 (2%) Strand=Plus/Minus Query 139311 AGTGCTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTC-TAATATGCTGCTCTCT 139369 ||| | || || ||||| ||||| ||||| |||||||| | || | ||||||||||| || Sbjct 7970644 AGTACCTGAGCAGTGCAAATGTTGCTGGTAGCTTTGTCCCCTCCTGATATGCTGCTCCCT 7970585 Query 139370 AGTTTGTAGTGCTAATCTGTATGCAGGATTGCCTTCGCTGTC--CACTGACTGACCTACA 139427 || || | || | | ||||| || || | || |||| || ||| | | Sbjct 7970584 TGTCTGCATAGCCATACGCAGCGCAGGCTTCCCCGAGGAATCAACACTAAC--ACCAATA 7970527 Query 139428 ATTCTGCCAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGA 139487 ||||| || || ||| | ||||| |||| | || || || | ||| || ||||||||| Sbjct 7970526 ATTCTCCCCGGCATCATCCTCTTGTACTCTTGTGAGGTGGCCAGGAAAGCCGCATGAGGA 7970467 Query 139488 CCTCCGTATCCCATAGGAATACCAAACCTTTGCATACTACCTACAGCAATATC 139540 ||||| || ||||| |||| ||||||||| ||| | ||| ||| ||||||| Sbjct 7970466 CCTCCATACCCCATCGGAACACCAAACCTCTGCGCAGAACCAACAACAATATC 7970414 Score = 84.2 bits (92), Expect = 3e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 |||||||||||||| | |||||| || |||||||| |||||||| || ||||| || || Sbjct 7972712 ACACCAATAGGACCCATGCCAGGGCCACCACCTCCGTGTGGAATGCAAAATGTTTTGTGG 7972653 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTG 138298 | ||| ||||| || || || || ||| || ||| ||| ||||| ||||| Sbjct 7972652 AGATTGAGATGGCAAACGTCAGCTCCAATCCAACCTGGGCTTGTCAGACCAACCTG 7972597 >seq11 Length=35299535 Score = 91.5 bits (100), Expect = 2e-13 Identities = 203/303 (67%), Gaps = 4/303 (1%) Strand=Plus/Plus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 |||||| ||||| || | ||||| || || || ||||||| || || |||| || || Sbjct 68610 TTAAAGAGCGTTTCCACGGGGTAAAACCTCCTCAGGGAATATAAGGTTTTCATAAGGCTG 68669 Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAA 122985 || || |||||| || || |||||||| | ||||| || || || ||||| Sbjct 68670 ATCTTGAGCCACCATCCAAGCATGTATACCTTCATTTAAGAGAATATTGTTGGTTTAGAA 68729 Query 122986 AGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTCT 123045 |||||| || || || |||||| || | || | ||||| ||||| || || | | Sbjct 68730 AGTCTCAAATTCAGGATCTTCTACTACATGGATTTTCTGAGAAACAAAATCATAGACACG 68789 Query 123046 GAGGTTAAGTGCTAGACCTACGATACCTATAGATGA--TGTCCACATACCCATGACAGGA 123103 ||||| | || ||||| || ||| | ||| | |||| | ||| | || | Sbjct 68790 TAGGTTCAAGGCCAGACCCAC--TACTTCAAGAGCACTCATCCATAAACCGGTTACTAGT 68847 Query 123104 ACGAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTGT 123163 || || ||||||||||| ||||| | ||| || |||| || | ||||| || || Sbjct 68848 ACAAATAACATAAGGAAATGTAACCAATGTTTATTGGAAACAGCAACCCCAAAGATGTGG 68907 Query 123164 GAC 123166 ||| Sbjct 68908 GAC 68910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578989345912520