Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq9 297 3e-75 seq672 282 6e-71 seq1241 159 5e-34 seq13 154 2e-32 seq629 104 3e-17 seq8 104 3e-17 seq1081 98.7 1e-15 seq376 93.3 6e-14 seq3 91.5 2e-13 seq1185 87.8 2e-12 seq14 87.8 2e-12 >seq9 Length=33717675 Score = 297 bits (328), Expect = 3e-75 Identities = 456/641 (71%), Gaps = 8/641 (1%) Strand=Plus/Minus Query 23639 GAAGTGCAACCAACGCTTATTGCTAAACGCAACCCCGAAGATTTGTGACCAAAAACGATT 23698 ||| || |||||||| |||||| ||| ||||||| |||||||| |||||||| | || Sbjct 26714822 GAAATGTAACCAACGTTTATTGGAAAAAGCAACCCTAAAGATTTGGGACCAAAAGYGGTT 26714763 Query 23699 TGCTGTAACCATCGAATAGGTCTCCTCCTCCTGAGTGGAATCGAACGCTTTAAAAGTGTT 23758 | || ||||| ||||| || || || | ||||| | | ||| | || || || Sbjct 26714762 AGTGGTGACCATTGAATAAGTTTCTTCAACTTGAGTTGGGTTGAAACCACGGAATGTATT 26714703 Query 23759 TGCCTGTTCTCCATCTTCATACAGTGTATTCTCGACAGTAACTCCATGAATAGCAGAGAG 23818 ||| || |||||| || | | ||||| | | || | || |||||||| | | Sbjct 26714702 TGCACCATCACCATCTCCAAATAAAGTATTTTTTATGATAGCACCGTGAATAGCGCATAA 26714643 Query 23819 AAGTGCTCCTCCCAGTATACCAGCAACTCCCATCATATGGAAGGGGTTGAGCGTCCAGTT 23878 | || | |||| | ||| |||||||||||||||| || ||||| || ||||| || Sbjct 26714642 CAAAGCAGCGCCCAACACCCCAACAACTCCCATCATATGAAATGGGTTTAGTGTCCAATT 26714583 Query 23879 ATGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAAATCGCCGCAACACCGAAACTCGGCGC 23938 |||||| ||||| | ||||| | ||| | || || || || ||||| ||||| || || Sbjct 26714582 ATGAAACCCCTGRAAAAAGAGGATGAATCAAAATATAGCTGCTACACCAAAACTAGGTGC 26714523 Query 23939 AAAGAACCAAGATGACTGTCCCAAAGGATAGATGAGGAATACAGACACGAATACAGCAAT 23998 |||||||||| ||||| || || ||||| || ||||||||||| || || |||||||| Sbjct 26714522 AAAGAACCAACTAGACTGACCTAACGGATAAATTAGGAATACAGAAAC-AAAACAGCAAT 26714464 Query 23999 AGGACCAGAAAAAGCAATCGCATTGTAGGGACGGATTCCAATTAGA-CGTGCCAGTTCAA 24057 ||||| || || ||||| ||||| | || | | | ||| ||| || || || |||| Sbjct 26714463 TGGACCGGAGAATGCAATTGCATTACAAGGTCACAATTCAA-CAGATCGAGCAAGCTCAA 26714405 Query 24058 ACTGACGTAACATAAAACCTATAAGTGCAAAGGCACCGTGGAGAGCAACAAAGGACCAAA 24117 | ||||||||||| |||||||| ||| | || || || || || |||||||| | | | | Sbjct 26714404 ATTGACGTAACAT-AAACCTATTAGTTCGAAAGCGCCATGTAGTGCAACAAAAGTCTATA 26714346 Query 24118 GCCCTCCAAGTTGGAGCCACCGTTGAAAGTCCCCTTGAGACTCAGGACCCCAAAGT-AGA 24176 | | || | ||| ||| || ||| || ||||| | ||||||||||| ||| | | Sbjct 26714345 GACTGCCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGACCCCATAGTAACA 26714286 Query 24177 AGAAGAGAATGACCCATAGCGTCAGCAGGCGTCGAGACAGC-TGCCGTAAGAAAGTTAGC 24235 | |||| | || | | | | ||| || || || || || | | |||| ||||||| Sbjct 26714285 ACAAGA-AGTGCGCTAAACTATTAGCCGGAGTGGAAACTGCATCACTTAAG-AAGTTAGA 26714228 Query 24236 ACCCTCAAGATAGGAACTAGCAAGTCCATGGGTGTACCAAC 24276 || || | ||||||||| || | || |||||| ||||||| Sbjct 26714227 GCCTTCCAAATAGGAACTTGCTAATCTATGGGTATACCAAC 26714187 >seq672 Length=1945142 Score = 282 bits (312), Expect = 6e-71 Identities = 525/768 (68%), Gaps = 35/768 (5%) Strand=Plus/Plus Query 23639 GAAGTGCAACCAACGCTTATTGCTAAACGCAACCCCGAAGATTTGTGACCAAAAACGATT 23698 ||| || |||||||| |||||| ||| ||||||| |||||||| |||||||| | || Sbjct 1649223 GAAATGTAACCAACGTTTATTGGAAAAAGCAACCCTAAAGATTTGGGACCAAAAGYGGTT 1649282 Query 23699 TGCTGTAACCATCGAATAGGTCTCCTCCTCCTGAGTGGAATCGAACGCTTTAAAAGTGTT 23758 | || ||||| ||||| || || || | ||||| | | |||| | Sbjct 1649283 AGTGGTGACCATTGAATAAGTTTCTTCAACTTGAGTTGGGT---------TAAACCGGAA 1649333 Query 23759 TGCCTGTTCTCCATCTTCATACAGTGTATTCTCGACAGTAACTCCATGAATAGCAGAGAG 23818 | ||| |||||| || | | ||||| | | || | || |||||||| | | Sbjct 1649334 T-----TTCCCCATCTCCAAATAAAGTATTTTYTATGATAGCACCGTGAATAGCGCATAA 1649388 Query 23819 AAGTGCTCCTCCCAGTATACCAGCAACTCCCATCATATGGAAGGGGTTGAGCGTCCAGTT 23878 | || | |||| | ||| |||||||||||||||| || ||||| || ||||| || Sbjct 1649389 CARAGCAGCGCCCAACACCCCAACAACTCCCATCATATGAAATGGGTTTAGTGTCCAATT 1649448 Query 23879 ATGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAAATCGCCGCAACACCGAAACTCGGCGC 23938 |||||| ||||| | ||||| | ||| | || || || || ||||| ||||| || || Sbjct 1649449 ATGAAACCCCTGRAAAAAGAGGATGAATCAAAATATAGCTGCTACACCAAAACTAGGTGC 1649508 Query 23939 AAAGAACCAAGATGACTGTCCCAAAGGATAGATGAGGAATACAGACACGAATACAGCAAT 23998 |||||||||| ||||| || || |||| || ||||||||||| || || |||||||| Sbjct 1649509 AAAGAACCAACYAGACTGACCTAAYRGATAAATTAGGAATACAGAAACAAAAACAGCAAT 1649568 Query 23999 AGGACCAGAAAAAGCAATCGCATTGTAGGGACGGATTCCAATTAGA-CGTGCCAGTTCAA 24057 ||||| || || ||||| ||||| | || | | | || ||| || || || |||| Sbjct 1649569 TGGACCGGAGAATGCAATTGCATTAYAAGGTCACAATTSAA-CAGATCGAGCAAGCTCAA 1649627 Query 24058 ACTGACGTAACATAAAACCTATAAGTGCAAAGGCACCGTGGAGAGCAACAAAGGACCAAA 24117 | ||||||||||| |||||||| ||| | || || || || || |||||||| | | | | Sbjct 1649628 ATTGACGTAACAT-AAACCTATTAGTCCGAAAGCGCCATGTAGTGCAACAAAAGTCTATA 1649686 Query 24118 GCCCTCCAAGTTGGAGCCACCGTTGAAAGTCCCCTTGAGACTCAGGACCCCAAAGT-AGA 24176 | | || | ||| ||| || ||| || ||||| | ||||||||||| ||| | | Sbjct 1649687 GACTGCCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGACCCCATAGTAACA 1649746 Query 24177 AGAAGAGAATGACCCATAGCGTCAGCAGGCGTCGAGACAGC-TGCCGTAAGAAAGTTAGC 24235 | |||| | || | | | | ||| || || || || || | | |||| |||||| Sbjct 1649747 ACAAGA-AGTGCGCTAAACTATTAGCCGGAGTGGAAACTGCATCACTTAAG-AAGTTAAA 1649804 Query 24236 ACCCTCAAGATAGGAACTAGCAAGTCCATGGGTGTACCAACTCGTAACAAAAGCTGTGCC 24295 || || | ||||||||| || | || |||||| |||||| | ||| | || Sbjct 1649805 GCCTTCCAAATAGGAACTTGCTAATCTATGGGTATACCAAAT--TAA--------ATTCC 1649854 Query 24296 AGTAAGCCAACCGCCAATGGCAAGATAAGCAGTGGGAAGAAGTAGGAGTCCAGACCAACC 24355 | |||||| || | || | ||| ||| |||| |||| | | ||||||||| Sbjct 1649855 ----AACCAACCCCCTAAAGCRAAATAGGCACAAGGAAAGAGTAATTGGCTAGACCAACC 1649910 Query 24356 CACAAAGACAAAGCGATCCCGTTTAACCCAGTCGTCCAAGATGTCAAA 24403 ||||| || ||||| | || | | |||||| |||| || ||||| Sbjct 1649911 TACAAAAACGAAGCGGTTCCTTCGTAACCAGTCATCCATAATATCAAA 1649958 >seq1241 Length=4265459 Score = 159 bits (176), Expect = 5e-34 Identities = 254/358 (71%), Gaps = 6/358 (2%) Strand=Plus/Plus Query 27322 GAATATGCTACACAGATCCATGGACGCATACCTAAACGATATGAGAGTTCCCACTCACGT 27381 |||||||| ||| ||||| || || ||||| | |||| | |||||||||||||| Sbjct 4250375 GAATATGCAACAACAATCCAAGGGCGTATACCCAGACGAAAACTAAGTTCCCACTCACGA 4250434 Query 27382 CCCATATAAGCATAGATGC--CGATAAGGAAGTGGAAGACTACCAGTTGGAAAGGACCAC 27439 |||| || ||| || | | | | | |||||| | || | || | ||||||||| Sbjct 4250435 CCCACGTA-GCA-AGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCAC 4250492 Query 27440 CGTTATACAACCACTCATCGAGTGATGCTGCTTCCCAGATTGGGTAGAAGTGGAGACCGA 27499 | || || ||||| ||||| | || | |||||||| || ||||| ||||| | ||| | Sbjct 4250493 CATTGTATAACCATTCATCAACAGAAGTCGCTTCCCATATAGGGTAAAAGTGCAAACCTA 4250552 Query 27500 TTGCATTTGAACTTGGGACAACTGCACCAGAAATGATGTTGTTGCCATACATAAGTGAAC 27559 | || ||| | || | || |||| | |||| || ||| | ||||| | | || | Sbjct 4250553 TAGCTGCAGAAGTAGGAATAATGGCACAAAAAATAATATTGCTTCCATAAAGTAAAGATC 4250612 Query 27560 CAGCAACGGGTTCACGAATACCGTCAATATCGACGGGTGGTGCTGCGATGAATGCGACAA 27619 ||| ||| |||||||||||||| |||||||| | || ||||| || ||||| || | || Sbjct 4250613 CAGAAACAGGTTCACGAATACCATCAATATCTATTGGAGGTGCAGCAATGAAAGCAATAA 4250672 Query 27620 TGAA-GCAGACAGTTGCTGCTAACAGTGTTGGGATCATCAGTACACCGAACCAACCAA 27676 | || |||| |||||| | || | || ||||||||| ||||| ||||| |||| Sbjct 4250673 TAAATACAGA-AGTTGCGGTCAATAAAGTAAGGATCATCAAAACACCAAACCATCCAA 4250729 >seq13 Length=34719086 Score = 154 bits (170), Expect = 2e-32 Identities = 254/363 (70%), Gaps = 6/363 (2%) Strand=Plus/Minus Query 27317 GAGCAGAATATGCTACACAGATCCATGGACGCATACCTAAACGATATGAGAGTTCCCACT 27376 ||| |||||||| ||| ||||| || || ||||| | | | | |||||||||| Sbjct 21513605 GAGYTGAATATGCAACAACAATCCAAGGGCGTATACCCAGAMRAAAACTAAGTTCCCACT 21513546 Query 27377 CACGTCCCATATAAGCATAGATGC--CGATAAGGAAGTGGAAGACTACCAGTTGGAAAGG 27434 |||| |||| || ||| || | | | | | |||||| | || | || | |||| Sbjct 21513545 CACGACCCACGTA-GCA-AGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGG 21513488 Query 27435 ACCACCGTTATACAACCACTCATCGAGTGATGCTGCTTCCCAGATTGGGTAGAAGTGGAG 27494 |||||| || || ||||| ||||| | || | |||||||| || ||||| ||||| | Sbjct 21513487 ACCACCATTGTATAACCATTCATCAACAGAAGTCGCTTCCCATATAGGGTAAAAGTGCAA 21513428 Query 27495 ACCGATTGCATTTGAACTTGGGACAACTGCACCAGAAATGATGTTGTTGCCATACATAAG 27554 ||| || || ||| | || | || |||| | |||| || ||| | ||||| | | Sbjct 21513427 ACCTATAGCTGCAGAAGTAGGAATAATGGCACAAAAAATAATATTGCTTCCATAAAGTAA 21513368 Query 27555 TGAACCAGCAACGGGTTCACGAATACCGTCAATATCGACGGGTGGTGCTGCGATGAATGC 27614 || |||| ||| |||||||||||||| |||||||| | || ||||| | ||||| || Sbjct 21513367 AGATCCAGAAACAGGTTCACGAATACCATCAATATCTATTGGAGGTGCAGYAATGAAAGC 21513308 Query 27615 GACAATGAA-GCAGACAGTTGCTGCTAACAGTGTTGGGATCATCAGTACACCGAACCAAC 27673 | ||| || |||| |||||| | || | || ||||||||| ||||| ||||| | Sbjct 21513307 AATAATAAATACAGA-AGTTGCGGTCAATAAAGTAAGGATCATCAAAACACCAAACCATC 21513249 Query 27674 CAA 27676 ||| Sbjct 21513248 CAA 21513246 >seq629 Length=2291386 Score = 104 bits (114), Expect = 3e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 26944 AAGAAGTGCAAGGAACGTGAGTTGTTGAATGAAGCATATTGGAAGATCAAACGACCGAAG 27003 |||||||| || ||| | |||||||| || |||||||||||||||||| | || || Sbjct 2029912 AAGAAGTGTAAAGAATGAGAGTTGTTCAAACTAGCATATTGGAAGATCAATCAGCCAAAA 2029971 Query 27004 TAGCCATGTGCTGCGACGATGTTGTAGGTCTCTTCTTCTTGACCGAACTTATAACCATAG 27063 || ||||| || || ||||| |||||||| ||||| |||||||| || | ||||| || Sbjct 2029972 TAACCATGAGCCGCTACGATATTGTAGGTTTCTTCCTCTTGACCAAATCTGTAACCGTAA 2030031 Query 27064 TT 27065 || Sbjct 2030032 TT 2030033 >seq8 Length=29603939 Score = 104 bits (114), Expect = 3e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 26944 AAGAAGTGCAAGGAACGTGAGTTGTTGAATGAAGCATATTGGAAGATCAAACGACCGAAG 27003 |||||||| || ||| | |||||||| || |||||||||||||||||| | || || Sbjct 4092039 AAGAAGTGTAAAGAATGAGAGTTGTTCAAACTAGCATATTGGAAGATCAATCAGCCAAAA 4091980 Query 27004 TAGCCATGTGCTGCGACGATGTTGTAGGTCTCTTCTTCTTGACCGAACTTATAACCATAG 27063 || ||||| || || ||||| |||||||| ||||| |||||||| || | ||||| || Sbjct 4091979 TAACCATGAGCCGCTACGATATTGTAGGTTTCTTCCTCTTGACCAAATCTGTAACCGTAA 4091920 Query 27064 TT 27065 || Sbjct 4091919 TT 4091918 >seq1081 Length=585217 Score = 98.7 bits (108), Expect = 1e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 23766 TCTCCATCTTCATACAGTGTATTCTCGACAGTAACTCCATGAATAGCAGAGAGAAGTGCT 23825 || ||||||||| | | |||| || |||||||| |||||||||| | | || || Sbjct 578730 TCACCATCTTCAAATAAAGTATCTTCTACAGTAACACCATGAATAGTGCATAAYAGAGCA 578789 Query 23826 CCTCCCAGTATACCAGCAACTCCCATCATATGGAAGGGGTTGAGCGTCCAGTTATGAAAG 23885 |||| | ||| |||||| ||||||||| || ||| | || || |||||||| Sbjct 578790 GTGCCCAACACTCCAACAACTCTCATCATATGAAATRAGTTCAATGTTCAATTATGAAAC 578849 Query 23886 CCCTGGAGGAAGAGAAGGAACCTGAAAATCGCCGCAACACCGAAACTCGGCGCAAAGAAC 23945 ||||||| ||||| | ||| | || || || || |||| ||| | ||||||||||| Sbjct 578850 CCCTGGAAAAAGAGGATGAATCAAAATATAGCTGCCACACGAAAATTGAGCGCAAAGAAC 578909 Query 23946 CAA 23948 ||| Sbjct 578910 CAA 578912 >seq376 Length=2445099 Score = 93.3 bits (102), Expect = 6e-14 Identities = 120/170 (71%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 27527 CAGAAATGATGTTGTTGCCATACATAAGTGAACCAGCAACGGGTTCACGAATACCGTCAA 27586 || || | ||| | ||||| | | || |||| ||| |||||| ||||||| |||| Sbjct 1076195 CARWAAYRWTATTGYTTCCATAAAGTAAAGATCCAGAAACAGGTTCAYGAATACCATCAA 1076136 Query 27587 TATCGACGGGTGGTGCTGCGATGAATGCGACAATGAAG-CAGACAGTTGCTGCTAACAGT 27645 |||| || ||||| || ||||| || | ||| || |||| ||||| | || | Sbjct 1076135 TATCTACCRRAGGTGCAGCAATGAAAGCAATAATAAATACAGA-AGTTGMGGTCAATAAA 1076077 Query 27646 GTTGGGATCATCAGTACACCGAACCAACCAACATACAAACGGTTGTTAGT 27695 || |||||||||| ||||| ||||| |||| || | |||||| | ||| Sbjct 1076076 GTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGT 1076027 >seq3 Length=33710802 Score = 91.5 bits (100), Expect = 2e-13 Identities = 174/253 (69%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 46995 ACATGCGAACTTTCTAGGTCAAAATTATCATTTGGACCATATAGGTTTGTAGGCATCAAA 47054 || |||||| |||| ||| ||| || |||| || ||||| | || || |||||| | Sbjct 25982047 ACGTGCGAATTTTCAGGGTGAAAGTTGTCATGCGGCCCATACAAATTGGTGGGCATCCCA 25982106 Query 47055 GAGATAGCATTAAATCCATACTGCTGATGGTATGCCTGACACATCTTGATACCAGCAATC 47114 || || |||| | | ||||| | || ||||| ||||||||||| || || ||| Sbjct 25982107 GAAATTGCATCCCAACTGTACTGAATCCGATACGCCTGGCACATCTTGATCCCGGCGATC 25982166 Query 47115 TTTGCAATAGCATAAGAATCATTACTAGGTTCAAGAGGACCACTCATTAGAT--ATTCTT 47172 || || || || || | || || |||| || || || || ||| | || ||| | Sbjct 25982167 TTGGCGATGGCGTACCACTCGTTGGTAGGCTCCAGTGGTCCCGTCAGCA-ATGCGTTC-T 25982224 Query 47173 CCCTAATAGGTTGTTCACATAATTTTGGATAAATGCAGGAAGAACCAAGAAATAAAAGTT 47232 || || ||||| | ||||| || ||||||||||| || ||||| || || || | Sbjct 25982225 CCGGGATGGGTTGAGGAGCGAATTTGGGGTAAATGCAGGAGGAGCCAAGGAACAAGAGCT 25982284 Query 47233 TCTTAACACCAAA 47245 |||| || ||||| Sbjct 25982285 TCTTGACTCCAAA 25982297 >seq1185 Length=2433339 Score = 87.8 bits (96), Expect = 2e-12 Identities = 115/159 (72%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 27538 TTGTTGCCATACATAAGTGAACCAGCAACGGGTTCACGAATACCGTCAATATCGACGGGT 27597 ||| | ||||| | | || |||| ||| |||||| ||||||| |||||||| || Sbjct 1074561 TTGYTTCCATAAAGTAAAGATCCAGAAACAGGTTCAYGAATACCATCAATATCTACCRAA 1074502 Query 27598 GGTGCTGCGATGAATGCGACAATGAAG-CAGACAGTTGCTGCTAACAGTGTTGGGATCAT 27656 ||||| || ||||| || | ||| || |||| ||||| | || | || |||||||| Sbjct 1074501 GGTGCAGCAATGAAAGCAATAATAAATACAGA-AGTTGAGGTCAATAAAGTAGGGATCAT 1074443 Query 27657 CAGTACACCGAACCAACCAACATACAAACGGTTGTTAGT 27695 || ||||| ||||| |||| || | |||||| | ||| Sbjct 1074442 CAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGT 1074404 >seq14 Length=29158859 Score = 87.8 bits (96), Expect = 2e-12 Identities = 115/159 (72%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 27538 TTGTTGCCATACATAAGTGAACCAGCAACGGGTTCACGAATACCGTCAATATCGACGGGT 27597 ||| | ||||| | | || |||| ||| |||||| ||||||| |||||||| || Sbjct 26472374 TTGYTTCCATAAAGTAAAGATCCAGAAACAGGTTCAYGAATACCATCAATATCTACCRAA 26472315 Query 27598 GGTGCTGCGATGAATGCGACAATGAAG-CAGACAGTTGCTGCTAACAGTGTTGGGATCAT 27656 ||||| || ||||| || | ||| || |||| ||||| | || | || |||||||| Sbjct 26472314 GGTGCAGCAATGAAAGCAATAATAAATACAGA-AGTTGAGGTCAATAAAGTAGGGATCAT 26472256 Query 27657 CAGTACACCGAACCAACCAACATACAAACGGTTGTTAGT 27695 || ||||| ||||| |||| || | |||||| | ||| Sbjct 26472255 CAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGT 26472217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665483993331320