Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq864 96.9 4e-15 seq15 95.1 1e-14 seq9 93.3 5e-14 seq8 93.3 5e-14 seq486 86.0 7e-12 seq12 86.0 7e-12 >seq864 Length=2386779 Score = 96.9 bits (106), Expect = 4e-15 Identities = 222/334 (66%), Gaps = 4/334 (1%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 ||||| || |||||||| || || || || || || |||||| | ||| ||||| Sbjct 704652 CCAGGAACCGGAAAGACTCTGCTAGCAAAGGCAATTGCTGGTGAAGCGGGTGTTCCATTT 704593 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || ||| | | | ||||| || |||||||||||||| ||||| | ||| Sbjct 704592 TTCTCCATCTCAGGTTCTGAATTTGTTGAAATGTTTGTTGGTGTTGGTGCTTCCCGAGTT 704533 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATT 175494 || ||||| ||| | | ||| || ||| ||| || ||||| || ||||||| ||| Sbjct 704532 CGTGATCTTTTTAAGAAGGCCAAGGAGAATGCACCTTGCATTGTATTTGTTGATGAAATT 704473 Query 175495 GATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAAC 175552 || || || || |||| | | |||| | | | | || || || || || |||| Sbjct 704472 GACGCTGTTGGACGGCAAAGAGGAACTGGAATTGGAGG--AGGGAACGATGAAAGGGAAC 704415 Query 175553 AAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGG 175612 |||| ||||||| || | || || |||||||| ||||| | ||||| || | | Sbjct 704414 AAACCCTTAATCAGCTTTTGACAGAAATGGATGGTTTTGARGGCAACACTGGTATYATYG 704355 Query 175613 TTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 | |||| || ||||| | | || || ||||| Sbjct 704354 TGGTTGCAGCGACTAACAGGGCAGAYATTCTTGA 704321 >seq15 Length=47181002 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACG 75186 ||||||| ||| | || ||||||||| |||| || ||||||| | || || | || | Sbjct 34781324 CGGGACTTTGACTATGATTACTTTGGCTTCAAGACTCTTGAGAGGTCTTACCTCTTAAAG 34781265 Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246 | || | |||| | |||||| || || ||||| | ||| |||| | | || || Sbjct 34781264 GTTCAA-GGCAAAGTTGTGGAAAGACCTCAACACATGCTAATGAGGGTTTCTGTTGGGAT 34781206 Query 75247 CCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 75306 ||| ||| || || |||||||| | ||||||| || |||||| || | ||| Sbjct 34781205 TCACAAGGATGATATCGATTCTGTTATCAAGACATATCACCTGATGTCTCAGCGGTGGTT 34781146 Query 75307 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAG 75355 || ||| || | || |||||||||||| |||| || ||||| || ||| Sbjct 34781145 CACTCATGCTTCTCCCACCCTCTTCAATTCTGGAACTCCAAGGCCTCAG 34781097 >seq9 Length=33717675 Score = 93.3 bits (102), Expect = 5e-14 Identities = 219/332 (66%), Gaps = 0/332 (0%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || || || |||||||| || || || || || || |||||| | ||| ||||| Sbjct 26639352 CCRGGAACCGGAAAGACTCTGCTAGCAAAGGCAATTGCTGGTGAAGCKGGTGTTCCATTT 26639293 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || ||| | | | ||||| || |||||||||||||| ||||| | ||| Sbjct 26639292 TTCTCCATCTCAGGTTCTGARTTTGTTGAAATGTTTGTTGGTGTTGGTGCTTCCCGAGTT 26639233 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATT 175494 || ||||| ||| | | ||| || ||| ||| || ||||| || ||||||| ||| Sbjct 26639232 CGTGATCTTTTTAAGAAGGCCAAGGAGAATGCACCTTGCATTGTATTTGTTGATGAAATT 26639173 Query 175495 GATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAA 175554 || || || || |||| | | |||| | || || || || || |||||| Sbjct 26639172 GACGCTGTTGGACGGCAAAGAGGAACTGGAATTGGWGGAGGGAACGATGAAAGGGAACAA 26639113 Query 175555 ACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTT 175614 || ||||||| || | || || |||||||| ||||| | ||||| || | || Sbjct 26639112 ACCCTTAATCAGCTTTTGACAGAAATGGATGGTTTTGARGGCAACACTGGTATYATYGTG 26639053 Query 175615 ATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 |||| || ||||| | | ||||| ||||| Sbjct 26639052 GTTGCAGCGACTAACAGGGCAGATATTCTTGA 26639021 Score = 86.0 bits (94), Expect = 7e-12 Identities = 244/367 (66%), Gaps = 10/367 (3%) Strand=Plus/Minus Query 175229 AAGAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTG-GAAGTGGTGCCAAGA-T 175286 |||||||||| || || || || ||||| ||| | |||| | ||| | ||||| | Sbjct 3204463 AAGAGATTGTTGAATTCCTGAA--AACCCCAGAAAAGTTTTCTGCAGTTGGAGCAAGAAT 3204406 Query 175287 CCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGC 175346 ||| ||| | ||||| | ||| |||||| || |||||||| || || ||| || Sbjct 3204405 TCCCAAAGGGGTTCTTCTTGTGGGGCCGCCAGGGACCGGAAAGACACTGCTGGCCAAGGC 3204346 Query 175347 CATCGCGGGTGAATCAAATGTCCCATTCATC-CAGTGCTCTGCCGCAAACTTTGTGGAGA 175405 ||| || |||||| | || || || || | || || | || | || | |||| Sbjct 3204345 CATTGCAGGTGAAGCGGGRGTGCCTTTTTTCTCTCTG-TCRGGRTCAGAGTTCATTGAGA 3204287 Query 175406 TGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATC 175465 ||||||| || || || || |||||| | ||| | || | | || | ||| Sbjct 3204286 TGTTTGTGGGAGTAGGAGCTTCTAGGGTTAGAGATTTGTTCAACAAGGCGAAGGCGAATT 3204227 Query 175466 AACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG-- 175523 || || | || |||||||| ||||| ||||| ||||| | ||| | || | || Sbjct 3204226 CTCCGTGCCTGGTTTTCATTGACGAGATAGATGCTGTGGGGAGGCAGAGAGGCACAGGAA 3204167 Query 175524 TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGA 175583 | | || | |||||| ||||| || ||||| | ||||| || ||||| || ||||| Sbjct 3204166 TCGGCGGC--GGAAATGATGAGAGGGAGCAAACTCTGAATCAGCTGCTCACTGAAATGGA 3204109 Query 175584 TGGCTTT 175590 ||| ||| Sbjct 3204108 TGGGTTT 3204102 >seq8 Length=29603939 Score = 93.3 bits (102), Expect = 5e-14 Identities = 213/318 (67%), Gaps = 6/318 (2%) Strand=Plus/Plus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 || ||||| ||||| ||| ||| | | ||| || ||||| || |||||||| Sbjct 358910 GGYGCCAAAATCCCAAAAGGATGTCTTTTGGTGGGYCCACCTGGTACCGGSAAGACCCTT 358969 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAAC 175395 || || || || | || || || | || || || |||| | || | | Sbjct 358970 CTGGCTCGCGCYGTGGCCGGMGAGGCTGGGACGCCGTTTTTCTCGTGCGCGGCTTCCGAG 359029 Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 || |||||| ||||||| || ||||| || || || || || | || || | ||| Sbjct 359030 TTCGTGGAGTTGTTTGTGGGAGTGGGGGCGTCGAGAGTRCGGGACTTGTTCGAGAAGGCC 359089 Query 175456 C-GCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACG 175514 | ||| | || || ||||| |||||||||||||| ||||||||||| | ||| | Sbjct 359090 AAGTCGAAAGCG-CCGTGCATTGTGTTCATTGATGAGATAGATGCGGTGGGGAGGCAGAG 359148 Query 175515 CAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTC 175572 |||| || ||| || | ||||| ||||| || ||||| |||||||| || || Sbjct 359149 AGGCGCGGGRATGGGCGGCGGG--AATGATGAGAGGGAGCAAACTATTAATCAGCTGCTG 359206 Query 175573 ACCGAGATGGATGGCTTT 175590 || ||||||||||| ||| Sbjct 359207 ACGGAGATGGATGGGTTT 359224 >seq486 Length=229640 Score = 86.0 bits (94), Expect = 7e-12 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACG 75186 ||||||| ||| | || ||||||||| |||| || ||||||| | || || | || | Sbjct 170015 CGGGACTTTGACTATGATTACTTTGGCTTCAAGACTCTTGAGAGGTCTTACCTGTTAAAG 170074 Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246 | || | |||| | | |||| || || ||||| | ||| |||| | | || || Sbjct 170075 GTTCAA-GGCAAAGTTGTAGAAAGGCCTCAACACATGCTAATGAGGGTTTCTGTTGGGAT 170133 Query 75247 CCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 75306 ||| | | || ||||||||||| | |||||| | |||||| ||| | ||| Sbjct 170134 TCACAAGRACGATATTGATTCTGTTATCAGGACATATCATTTGATGTCTCAACGGTGGTT 170193 Query 75307 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 || ||| || | || |||||||||||| |||| || ||||| || || Sbjct 170194 CACTCATGCTTCTCCCACCCTCTTCAATTCTGGAACCCCAAGGCCTCA 170241 >seq12 Length=31678690 Score = 86.0 bits (94), Expect = 7e-12 Identities = 95/125 (76%), Gaps = 4/125 (3%) Strand=Plus/Plus Query 175468 CCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TG 175525 || || ||||| |||||||||||||| ||||||||||| | ||| | |||| || || Sbjct 20683281 CCGTGCATTGTGTTCATTGATGAGATAGATGCGGTGGGGAGGCAGAGAGGCGCGGGGATG 20683340 Query 175526 GTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATG 175585 | || | ||||| ||||| || || || |||||||| || || || |||||||||| Sbjct 20683341 GGCGGC--GGGAATGATGAGAGGGAGCAGACTATTAATCAGCTGCTGACGGAGATGGATG 20683398 Query 175586 GCTTT 175590 | ||| Sbjct 20683399 GGTTT 20683403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596560271142880