Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq1241 123 3e-23 seq13 122 1e-22 seq629 89.7 6e-13 seq8 89.7 6e-13 >seq1241 Length=4265459 Score = 123 bits (136), Expect = 3e-23 Identities = 218/315 (69%), Gaps = 2/315 (1%) Strand=Plus/Plus Query 8527 TCCCACTGTCTACCCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGA 8586 ||||||| | ||||| ||| || | |||| | |||||| | | || | || | Sbjct 4250423 TCCCACTCACGACCCACGTAGCAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCA 4250482 Query 8587 TATGGACCTCCGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAG 8646 || ||||| || || || ||||| ||||| | | | |||||||| || || || ||| Sbjct 4250483 TAAGGACCACCATTGTATAACCATTCATCAACAGAAGTCGCTTCCCATATAGGGTAAAAG 4250542 Query 8647 TGTAATCCAATAGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATAC 8706 || || || ||||| |||| |||| | |||| | | || || ||| ||||||| Sbjct 4250543 TGCAAACCTATAGCTGCAGAAGTAGGAATAATGGCACAAAAAATAATATTGCTTCCATAA 4250602 Query 8707 ATGAATGAACCTGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATA 8766 | || || || | |||||||||||||||||| || ||||| | || || |||||||| Sbjct 4250603 AGTAAAGATCCAGAAACAGGTTCACGAATACCATCAATATCTATTGGAGGTGCAGCAATG 4250662 Query 8767 AATGCCACGATAAAGCAAGTAGCAGCAG-CTAACAAGCAAGGAATCATTAGAACTCCAAA 8825 || || | ||||| || || || | | | ||| |||| ||||| | ||| ||||| Sbjct 4250663 AAAGCAATAATAAATACAGAAGTTGCGGTCAATAAAGTAAGG-ATCATCAAAACACCAAA 4250721 Query 8826 CCAACCGACATAAAG 8840 ||| || | ||||| Sbjct 4250722 CCATCCAATGTAAAG 4250736 >seq13 Length=34719086 Score = 122 bits (134), Expect = 1e-22 Identities = 217/315 (69%), Gaps = 2/315 (1%) Strand=Plus/Minus Query 8527 TCCCACTGTCTACCCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGA 8586 ||||||| | ||||| ||| || | |||| | |||||| | | || | || | Sbjct 21513552 TCCCACTCACGACCCACGTAGCAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCA 21513493 Query 8587 TATGGACCTCCGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAG 8646 || ||||| || || || ||||| ||||| | | | |||||||| || || || ||| Sbjct 21513492 TAAGGACCACCATTGTATAACCATTCATCAACAGAAGTCGCTTCCCATATAGGGTAAAAG 21513433 Query 8647 TGTAATCCAATAGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATAC 8706 || || || ||||| |||| |||| | |||| | | || || ||| ||||||| Sbjct 21513432 TGCAAACCTATAGCTGCAGAAGTAGGAATAATGGCACAAAAAATAATATTGCTTCCATAA 21513373 Query 8707 ATGAATGAACCTGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATA 8766 | || || || | |||||||||||||||||| || ||||| | || || |||| ||| Sbjct 21513372 AGTAAAGATCCAGAAACAGGTTCACGAATACCATCAATATCTATTGGAGGTGCAGYAATG 21513313 Query 8767 AATGCCACGATAAAGCAAGTAGCAGCAG-CTAACAAGCAAGGAATCATTAGAACTCCAAA 8825 || || | ||||| || || || | | | ||| |||| ||||| | ||| ||||| Sbjct 21513312 AAAGCAATAATAAATACAGAAGTTGCGGTCAATAAAGTAAGG-ATCATCAAAACACCAAA 21513254 Query 8826 CCAACCGACATAAAG 8840 ||| || | ||||| Sbjct 21513253 CCATCCAATGTAAAG 21513239 >seq629 Length=2291386 Score = 89.7 bits (98), Expect = 6e-13 Identities = 83/103 (81%), Gaps = 2/103 (2%) Strand=Plus/Plus Query 8121 GTTGTT-AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAA 8179 |||||| |||| | ||||| |||||||| |||| ||||| || |||||||| || || | Sbjct 2029932 GTTGTTCAAACTA-GCATATTGGAAGATCAATCAGCCAAAATAACCATGAGCCGCTACGA 2029990 Query 8180 TATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTT 8222 |||| ||||| ||||| ||||||||||| | ||||| || || Sbjct 2029991 TATTGTAGGTTTCTTCCTCTTGACCAAATCTGTAACCGTAATT 2030033 >seq8 Length=29603939 Score = 89.7 bits (98), Expect = 6e-13 Identities = 83/103 (81%), Gaps = 2/103 (2%) Strand=Plus/Minus Query 8121 GTTGTT-AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAA 8179 |||||| |||| | ||||| |||||||| |||| ||||| || |||||||| || || | Sbjct 4092019 GTTGTTCAAACTA-GCATATTGGAAGATCAATCAGCCAAAATAACCATGAGCCGCTACGA 4091961 Query 8180 TATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTT 8222 |||| ||||| ||||| ||||||||||| | ||||| || || Sbjct 4091960 TATTGTAGGTTTCTTCCTCTTGACCAAATCTGTAACCGTAATT 4091918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615852769451720