Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq9 228 9e-55 seq672 205 1e-47 seq1241 154 2e-32 seq13 147 2e-30 seq629 113 5e-20 seq8 113 5e-20 seq1251 91.5 2e-13 seq98 91.5 2e-13 seq1081 87.8 2e-12 >seq9 Length=33717675 Score = 228 bits (252), Expect = 9e-55 Identities = 374/535 (70%), Gaps = 4/535 (1%) Strand=Plus/Plus Query 167245 CTATGGGGTCCTGAATCTCAAGGGGATTTCGTCAGGTGGCTCCAACTTGGGGGACTCTGG 167304 ||||||||||||||| | ||||| ||||| | ||| ||| | || | || | | Sbjct 26714291 CTATGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCAGTCTATAG 26714350 Query 167305 GCTTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAA 167364 ||||||| || || || || || || | || || ||||| ||| | || || ||||| Sbjct 26714351 ACTTTTGTTGCACTACATGGCGCTTTCGAACTAATAGGTTT-ATGTTACGTCAATTTGAG 26714409 Query 167365 CTTGCTCGC-CTGATTGGTATCCGTCCCTACAATGCTATTGCTTTCTCTGGTCCTATTGC 167423 |||||||| ||| ||| | | || | ||||| ||||| ||||| ||||| ||||| Sbjct 26714410 CTTGCTCGATCTG-TTGAATTGTGACCTTGTAATGCAATTGCATTCTCCGGTCCAATTGC 26714468 Query 167424 TGTCTTCGTTAGCGTTTTCCTTCTCTATCCCCTCGGTCAAAGCAGCTGGTTCTTTGCCCC 167483 ||| || ||| || ||||| | ||||| | ||||| || ||||||||||| || Sbjct 26714469 TGTTTT-GTTTCTGTATTCCTAATTTATCCGTTAGGTCAGTCTAGTTGGTTCTTTGCACC 26714527 Query 167484 GTCCTTCGGAGTCGCCGCCATCTTCCGATTCCTCCTCTTCCTCCAAGGATTCCACAACTG 167543 || || || || || || || ||||| ||||||| | || || || || || || Sbjct 26714528 TAGTTTTGGTGTAGCAGCTATATTTTGATTCATCCTCTTTTTYCAGGGGTTTCATAATTG 26714587 Query 167544 GACACTGAATCCATTTCATATGATGGGTGTAGCAGGTATCCTGGGTGGTGCATTGCTTTC 167603 |||||| || ||||||||||||||||| || | || | |||| | ||| ||| | | Sbjct 26714588 GACACTAAACCCATTTCATATGATGGGAGTTGTTGGGGTGTTGGGCGCTGCTTTGTTATG 26714647 Query 167604 TGCAATCCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAGCAAGCAAACAC 167663 || || || |||| || || | |||||||| | || ||||||||| ||||| || Sbjct 26714648 CGCTATTCACGGTGCTATCATAAAAAATACTTTATTTGGAGATGGTGATGGTGCAAATAC 26714707 Query 167664 TTTTAAGGCATTCGATTCTACTCAGGAAGAAGAGACTTATTCAATGGTTACAGCAAACCG 167723 || | ||| | | ||||| | ||||| |||||||||||||| || | |||| Sbjct 26714708 ATTCCGTGGTTTCAACCCAACTCAAGTTGAAGAAACTTATTCAATGGTCACCACTAACCR 26714767 Query 167724 ATTCTGGTCTCAGATCTTCGGCATTGCTTTCAGCAACAAACGCTGGCTTCATTTC 167778 || ||||| || ||||| | ||||||| ||| ||||| ||| | |||||| Sbjct 26714768 CTTTTGGTCCCAAATCTTTAGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTC 26714822 >seq672 Length=1945142 Score = 205 bits (226), Expect = 1e-47 Identities = 510/770 (66%), Gaps = 39/770 (5%) Strand=Plus/Minus Query 167014 TTTGATGTCCTCGATGACTGGCTTAAAAGGGATCGTTTTGTTTTTGTTGGCTGGTCTGGA 167073 |||||| | | ||||||||| | |||| | || || |||||||| || |||||| | Sbjct 1649958 TTTGATATTATGGATGACTGGTTACGAAGGAACCGCTTCGTTTTTGTAGGTTGGTCTAGC 1649899 Query 167074 CTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTC 167133 | | || ||||| ||| ||| | ||| | || |||||| | ||| | Sbjct 1649898 CAATTACTCTTTCCTTGTGCCTATTTYGCTTTAGGGGGTTGGTT-----GGAAT------ 1649850 Query 167134 GTCACGAGTTGGTATACTCATGGACTCGC--GTCCAGTTATCTTGAGGGTGCGAACTTTC 167191 | | | ||||||||| ||| || | || || | ||| | || || ||||| Sbjct 1649849 -TTA--ATTTGGTATACCCATAGATTAGCAAGTTCC--TATTTGGAAGGCTTTAACTTCT 1649795 Query 167192 TTACTGCGGCAGTTAGTACTCCAGCAGATTCTATGGGTCA-TTCTTTACTTCTT-CTATG 167249 | | || |||||| ||||| || || | | | || ||||| || || ||||| Sbjct 1649794 TAAGTGATGCAGTTTCCACTCCGGCTAATAGTTTAGCGCACTTCTTG--TTGTTACTATG 1649737 Query 167250 GGGTCCTGAATCTCAAGGGGATTTCGTCAGGTGGCTCCAACTTGGGGGACTCTGGGCTTT 167309 |||||||||| | ||||| ||||| | ||| ||| | || | || | | |||| Sbjct 1649736 GGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCAGTCTATAGACTTT 1649677 Query 167310 TGTGGCGCTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGC 167369 ||| || || || || || || | || || ||||| ||| | || || ||||| ||||| Sbjct 1649676 TGTTGCACTACATGGCGCTTTCGGACTAATAGGTTT-ATGTTACGTCAATTTGAGCTTGC 1649618 Query 167370 TCGC-CTGATTGGTATCCGTCCCTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTCT 167428 ||| ||| || | | || | ||||| ||||| ||||| ||||| |||||||| | Sbjct 1649617 TCGATCTG-TTSAATTGTGACCTTRTAATGCAATTGCATTCTCCGGTCCAATTGCTGTTT 1649559 Query 167429 TCGTTAGCGTTTTCCTTCTCTATCCCCTCGGTCAAAGCAGCTGGTTCTTTGCCCCGTCCT 167488 | ||| || ||||| | |||| | ||||| | ||||||||||| || | Sbjct 1649558 TTGTTTCTGTATTCCTAATTTATCYRTTAGGTCAGTCTRGTTGGTTCTTTGCACCTAGTT 1649499 Query 167489 TCGGAGTCGCCGCCATCTTCCGATTCCTCCTCTTCCTCCAAGGATTCCACAACTGGACAC 167548 | || || || || || || ||||| ||||||| | || || || || || ||||||| Sbjct 1649498 TTGGTGTAGCAGCTATATTTTGATTCATCCTCTTTTTYCAGGGGTTTCATAATTGGACAC 1649439 Query 167549 TGAATCCATTTCATATGATGGGTGTAGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCAA 167608 | || ||||||||||||||||| || | || | |||| | ||| || | | || | Sbjct 1649438 TAAACCCATTTCATATGATGGGAGTTGTTGGGGTGTTGGGCGCTGCTYTGTTATGCGCTA 1649379 Query 167609 TCCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAGCAAGCAAACACTTTTA 167668 | || |||| || || | |||||||| | || |||||| || || || Sbjct 1649378 TTCACGGTGCTATCATARAAAATACTTTATTTGGAGATGGGGA--AA----------TTC 1649331 Query 167669 AGGCATTCGATTCTACTCAGGAAGAAGAGACTTATTCAATGGTTACAGCAAACCGATTCT 167728 || || | | ||||| | ||||| |||||||||||||| || | |||| || | Sbjct 1649330 CGG--TTTAACCCAACTCAAGTTGAAGAAACTTATTCAATGGTCACCACTAACCRCTTTT 1649273 Query 167729 GGTCTCAGATCTTCGGCATTGCTTTCAGCAACAAACGCTGGCTTCATTTC 167778 |||| || ||||| | ||||||| ||| ||||| ||| | |||||| Sbjct 1649272 GGTCCCAAATCTTTAGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTC 1649223 >seq1241 Length=4265459 Score = 154 bits (170), Expect = 2e-32 Identities = 265/382 (69%), Gaps = 2/382 (1%) Strand=Plus/Minus Query 165784 ACCAGCACAAATAACCGTCTGTATGTCGGTTGGTTTGGTACGCTGATGATTCCAACTCTG 165843 ||||||| | || | ||| || | || ||||||||| ||||||| | ||| | Sbjct 4250754 ACCAGCATTGAAAATCATCTTTACATTGGATGGTTTGGTGTTTTGATGATCCTTACTTTA 4250695 Query 165844 TTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTCCCCCTGTGGACATCGA 165902 ||| | |||||| |||| || || | || ||||| ||||| || || | || || || Sbjct 4250694 TTGACCGCAACT-TCTGTATTTATTATTGCTTTCATTGCTGCACCTCCAATAGATATTGA 4250636 Query 165903 CGGCATCCGTGAACCCGTCGCTGGTTCTCTGATGTATGGTAACAACATCATCTCTGGTGC 165962 || || |||||||| || |||| ||| | | ||||| | ||| || || | | |||| Sbjct 4250635 TGGTATTCGTGAACCTGTTTCTGGATCTTTACTTTATGGAAGCAATATTATTTTTTGTGC 4250576 Query 165963 AGTTGTTCCCTCTTCCAACGCAATTGGTCTACACTTCTATCCCATCTGGGAAGCCGCATC 166022 || |||| |||| || || ||| | ||||| || || || |||||||| | || Sbjct 4250575 CATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCTATATGGGAAGCGACTTC 4250516 Query 166023 GCTTGACGAATGGCTCTATAACGGTGGTCCTTTCCAACTGGTTGTCTTCCACTTCCTGAT 166082 |||| |||||| | || || |||||||||| | || |||| | |||||| | | Sbjct 4250515 TGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACT 4250456 Query 166083 TGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTGTCTTACCGTCTAGGTATGCGTCC 166142 ||| | | |||| ||||||||||||||||||| || ||||| ||||| || || Sbjct 4250455 TGGTGTAGCTTGCTACGTGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATACGCCC 4250396 Query 166143 ATGGATCTGTGTTGCTTACTCA 166164 ||||| |||||| || ||| Sbjct 4250395 TTGGATTGTTGTTGCATATTCA 4250374 >seq13 Length=34719086 Score = 147 bits (162), Expect = 2e-30 Identities = 263/384 (68%), Gaps = 2/384 (1%) Strand=Plus/Plus Query 165784 ACCAGCACAAATAACCGTCTGTATGTCGGTTGGTTTGGTACGCTGATGATTCCAACTCTG 165843 ||||||| | || | ||| || | || ||||||||| ||||||| | ||| | Sbjct 21513221 ACCAGCATTGAAAATCATCTTTACATTGGATGGTTTGGTGTTTTGATGATCCTTACTTTA 21513280 Query 165844 TTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTCCCCCTGTGGACATCGA 165902 ||| | |||||| |||| || || | || ||||| |||| || || | || || || Sbjct 21513281 TTGACCGCAACT-TCTGTATTTATTATTGCTTTCATTRCTGCACCTCCAATAGATATTGA 21513339 Query 165903 CGGCATCCGTGAACCCGTCGCTGGTTCTCTGATGTATGGTAACAACATCATCTCTGGTGC 165962 || || |||||||| || |||| ||| | | ||||| | ||| || || | | |||| Sbjct 21513340 TGGTATTCGTGAACCTGTTTCTGGATCTTTACTTTATGGAAGCAATATTATTTTTTGTGC 21513399 Query 165963 AGTTGTTCCCTCTTCCAACGCAATTGGTCTACACTTCTATCCCATCTGGGAAGCCGCATC 166022 || |||| |||| || || ||| | ||||| || || || |||||||| | || Sbjct 21513400 CATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCTATATGGGAAGCGACTTC 21513459 Query 166023 GCTTGACGAATGGCTCTATAACGGTGGTCCTTTCCAACTGGTTGTCTTCCACTTCCTGAT 166082 |||| |||||| | || || |||||||||| | || |||| | |||||| | | Sbjct 21513460 TGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACT 21513519 Query 166083 TGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTGTCTTACCGTCTAGGTATGCGTCC 166142 ||| | | |||| ||||||||||||||||||| || ||| ||||| || || Sbjct 21513520 TGGTGTAGCTTGCTACGTGGGTCGTGAGTGGGAACTTAGTTTTYKTCTGGGTATACGCCC 21513579 Query 166143 ATGGATCTGTGTTGCTTACTCAGC 166166 ||||| |||||| || ||| | Sbjct 21513580 TTGGATTGTTGTTGCATATTCARC 21513603 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 18128 TTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAAT 18187 ||||| |||||||||| || ||||| || ||| |||| ||||||||||||||| ||| Sbjct 22010948 TTCCTTAGTAGCTCAGTGGTAGAGCGGTCAACTATTAACTAATTGGTCGTAGGTTCGAAT 22010889 Query 18188 CCTACCTGGGGAG 18200 ||||||||||||| Sbjct 22010888 CCTACCTGGGGAG 22010876 >seq629 Length=2291386 Score = 113 bits (124), Expect = 5e-20 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 166420 AACTACGGTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGT 166479 || |||||||||| || || ||||| |||||||| ||||| |||||||| ||||||||| Sbjct 2030033 AATTACGGTTACAGATTTGGTCAAGAGGAAGAAACCTACAATATCGTAGCGGCTCATGGT 2029974 Query 166480 TACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTC 166539 || || || | |||||||||||||| ||| || |||||||| | || || |||||| Sbjct 2029973 TATTTTGGCTGATTGATCTTCCAATATGCTAGTTTGAACAACTCTCATTCTTTACACTTC 2029914 Query 166540 TT 166541 || Sbjct 2029913 TT 2029912 >seq8 Length=29603939 Score = 113 bits (124), Expect = 5e-20 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 166420 AACTACGGTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGT 166479 || |||||||||| || || ||||| |||||||| ||||| |||||||| ||||||||| Sbjct 4091918 AATTACGGTTACAGATTTGGTCAAGAGGAAGAAACCTACAATATCGTAGCGGCTCATGGT 4091977 Query 166480 TACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTC 166539 || || || | |||||||||||||| ||| || |||||||| | || || |||||| Sbjct 4091978 TATTTTGGCTGATTGATCTTCCAATATGCTAGTTTGAACAACTCTCATTCTTTACACTTC 4092037 Query 166540 TT 166541 || Sbjct 4092038 TT 4092039 >seq1251 Length=396947 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 18128 TTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAAT 18187 |||||||||||||||| || ||||| ||| ||||||| || ||||||||||||||||| Sbjct 247075 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCAAAT 247016 Query 18188 CCTACCTGGGGAG 18200 ||||| ||||||| Sbjct 247015 CCTACTTGGGGAG 247003 >seq98 Length=658186 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 18128 TTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAAT 18187 |||||||||||||||| || ||||| ||| ||||||| || ||||||||||||| ||| Sbjct 224072 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCGAAT 224013 Query 18188 CCTACCTGGGGAG 18200 ||||||||||||| Sbjct 224012 CCTACCTGGGGAG 224000 >seq1081 Length=585217 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/187 (71%), Gaps = 4/187 (2%) Strand=Plus/Minus Query 167467 AGCTGGTTCTTTGCCCCGTCCTTCGGAGTCGCCGCCATCTTCCGATTCCTCCTCTTCCTC 167526 || ||||||||||| | || | || || || || || ||||| ||||||| || Sbjct 578914 AGTTGGTTCTTTGCGCTCAATTTTCGTGTGGCAGCTATATTTTGATTCATCCTCTTTTTC 578855 Query 167527 CAAGGATTCCACAACTGGACACTGAATCCATTTCATATGATGGGTGTAGCAGGTATCCTG 167586 || || || || || || ||| |||| ||||||||||||| | || | || | || Sbjct 578854 CAGGGGTTTCATAATTGAACATTGAACTYATTTCATATGATGAGAGTTGTTGGAGTGTTG 578795 Query 167587 GGTGGTGCATTGCTTTCTGCA--ATCCATGGTGTTACAGTAGAGAATACTTTGTATGAAG 167644 || ||| | || |||| || ||||||||||| ||||| ||||||| | ||||| Sbjct 578794 GGCACTGCTCTR--TTATGCACTATTCATGGTGTTACTGTAGAAGATACTTTATTTGAAG 578737 Query 167645 ATGGTGA 167651 ||||||| Sbjct 578736 ATGGTGA 578730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561239223484400