Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq1241 116 1e-21 seq13 111 5e-20 seq629 98.7 3e-16 seq8 98.7 3e-16 >seq1241 Length=4265459 Score = 116 bits (128), Expect = 1e-21 Identities = 248/365 (68%), Gaps = 4/365 (1%) Strand=Plus/Minus Query 41266 TCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTG-CCGCTACAACTT 41324 |||||| | |||||||| || || | ||||| || | | | ||| |||| || || Sbjct 4250737 TCTTTACATTGGATGGTTTGGTGTTTTGATGAT-CCTTACTTTATTGACCGCAACTTCTG 4250679 Query 41325 GTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGAGAACCCG 41384 |||||||| || || ||| ||||| || | || || ||||| || || ||||| | Sbjct 4250678 TATTTATTATTGCTTTCATTGCTGCACCTCCAATAGATATTGATGGTATTCGTGAACCTG 4250619 Query 41385 TCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCGAGCAGTA 41444 | |||| || | | ||||| | ||| || || | | ||| | |||| | | Sbjct 4250618 TTTCTGGATCTTTACTTTATGGAAGCAATATTATTTTTTGTGCCATTATTCCTACTTCTG 4250559 Query 41445 ATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATGGCTGT 41504 || || || | ||||| ||||| || |||||||| || | ||||||||||| | | Sbjct 4250558 CAGCTATAGGTTTGCACTTTTACCCTATATGGGAAGCGACTTCTGTTGATGAATGGTTAT 4250499 Query 41505 ACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCT-TTGCTTAC 41563 |||| || ||||| | | || | || | |||||| | |||| || ||||| || Sbjct 4250498 ACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCT-AC 4250440 Query 41564 ATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGTTGCG 41623 |||| || |||||||||||||| | ||| || || || | || ||||| ||||||| Sbjct 4250439 GTGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATACGCCCTTGGATTGTTGTTGCA 4250380 Query 41624 TACTC 41628 || || Sbjct 4250379 TATTC 4250375 >seq13 Length=34719086 Score = 111 bits (122), Expect = 5e-20 Identities = 248/370 (67%), Gaps = 4/370 (1%) Strand=Plus/Plus Query 41266 TCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTG-CCGCTACAACTT 41324 |||||| | |||||||| || || | ||||| || | | | ||| |||| || || Sbjct 21513238 TCTTTACATTGGATGGTTTGGTGTTTTGATGAT-CCTTACTTTATTGACCGCAACTTCTG 21513296 Query 41325 GTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGAGAACCCG 41384 |||||||| || || || ||||| || | || || ||||| || || ||||| | Sbjct 21513297 TATTTATTATTGCTTTCATTRCTGCACCTCCAATAGATATTGATGGTATTCGTGAACCTG 21513356 Query 41385 TCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCGAGCAGTA 41444 | |||| || | | ||||| | ||| || || | | ||| | |||| | | Sbjct 21513357 TTTCTGGATCTTTACTTTATGGAAGCAATATTATTTTTTGTGCCATTATTCCTACTTCTG 21513416 Query 41445 ATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATGGCTGT 41504 || || || | ||||| ||||| || |||||||| || | ||||||||||| | | Sbjct 21513417 CAGCTATAGGTTTGCACTTTTACCCTATATGGGAAGCGACTTCTGTTGATGAATGGTTAT 21513476 Query 41505 ACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGT-CTTTGCTTAC 41563 |||| || ||||| | | || | || | |||||| | |||| || |||| ||| Sbjct 21513477 ACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGC-TAC 21513535 Query 41564 ATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGTTGCG 41623 |||| || |||||||||||||| | | || || || | || ||||| ||||||| Sbjct 21513536 GTGGGTCGTGAGTGGGAACTTAGTTTTYKTCTGGGTATACGCCCTTGGATTGTTGTTGCA 21513595 Query 41624 TACTCTGCTC 41633 || || ||| Sbjct 21513596 TATTCARCTC 21513605 >seq629 Length=2291386 Score = 98.7 bits (108), Expect = 3e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 41885 AACTATGGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGC 41944 || || ||||||| ||||||||||||||||| || |||||||| || || ||||| || Sbjct 2030033 AATTACGGTTACAGATTTGGTCAAGAGGAAGAAACCTACAATATCGTAGCGGCTCATGGT 2029974 Query 41945 TATTTTGGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTC 42004 |||||||| | | ||||||||||||||||| || || || || | | | | || ||| Sbjct 2029973 TATTTTGGCTGATTGATCTTCCAATATGCTAGTTTGAACAACTCTCATTCTTTACACTTC 2029914 Query 42005 TT 42006 || Sbjct 2029913 TT 2029912 >seq8 Length=29603939 Score = 98.7 bits (108), Expect = 3e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 41885 AACTATGGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGC 41944 || || ||||||| ||||||||||||||||| || |||||||| || || ||||| || Sbjct 4091918 AATTACGGTTACAGATTTGGTCAAGAGGAAGAAACCTACAATATCGTAGCGGCTCATGGT 4091977 Query 41945 TATTTTGGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTC 42004 |||||||| | | ||||||||||||||||| || || || || | | | | || ||| Sbjct 4091978 TATTTTGGCTGATTGATCTTCCAATATGCTAGTTTGAACAACTCTCATTCTTTACACTTC 4092037 Query 42005 TT 42006 || Sbjct 4092038 TT 4092039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146212227893704