Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq1241 156 1e-33 seq13 147 6e-31 seq376 131 5e-26 seq1185 127 6e-25 seq14 127 6e-25 seq629 80.6 8e-11 seq8 80.6 8e-11 >seq1241 Length=4265459 Score = 156 bits (172), Expect = 1e-33 Identities = 279/405 (69%), Gaps = 2/405 (0%) Strand=Plus/Minus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || ||||||| || | | || | | | || | |||||| |||| |||||| Sbjct 4250778 TGGGGTCGCTTTTGTAGCTAGATAACCAGCATTGAAAATCATCTTTACATTGGATGGTTT 4250719 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTGT-TTTATTGTCGCTTTCAT 42398 ||||| ||||||| | | | | | || || | ||| |||||| | |||||||| Sbjct 4250718 GGTGTTTTGATGATCCTTACTTTATTGACCGCAACTTC-TGTATTTATTATTGCTTTCAT 4250660 Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTA 42458 |||||| ||||| |||| |||||||| |||||||||||||| ||||| ||| | || || Sbjct 4250659 TGCTGCACCTCCAATAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTTTACTTTA 4250600 Query 42459 TGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTT 42518 ||| | ||| || || | | ||||| | | |||| | || || || | || || Sbjct 4250599 TGGAAGCAATATTATTTTTTGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTT 4250540 Query 42519 GTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCA 42578 || | || |||||||| | | | |||| |||||| | |||||||| || |||||| | Sbjct 4250539 TTACCCTATATGGGAAGCGACTTCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGA 4250480 Query 42579 GCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAACT 42638 ||| | || | |||||| | | ||| | | ||| |||| || || |||||||| Sbjct 4250479 GCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACGTGGGTCGTGAGTGGGAACT 4250420 Query 42639 TTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTC 42683 | | || || || || | || ||||| ||||||| || || Sbjct 4250419 TAGTTTTCGTCTGGGTATACGCCCTTGGATTGTTGTTGCATATTC 4250375 >seq13 Length=34719086 Score = 147 bits (162), Expect = 6e-31 Identities = 276/405 (68%), Gaps = 2/405 (0%) Strand=Plus/Plus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || ||||||| || | | || | | | || | |||||| |||| |||||| Sbjct 21513197 TGGGGTCGCTTTTGTAGCTAGATAACCAGCATTGAAAATCATCTTTACATTGGATGGTTT 21513256 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTGT-TTTATTGTCGCTTTCAT 42398 ||||| ||||||| | | | | | || || | ||| |||||| | |||||||| Sbjct 21513257 GGTGTTTTGATGATCCTTACTTTATTGACCGCAACTTC-TGTATTTATTATTGCTTTCAT 21513315 Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTA 42458 | |||| ||||| |||| |||||||| |||||||||||||| ||||| ||| | || || Sbjct 21513316 TRCTGCACCTCCAATAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTTTACTTTA 21513375 Query 42459 TGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTT 42518 ||| | ||| || || | | ||||| | | |||| | || || || | || || Sbjct 21513376 TGGAAGCAATATTATTTTTTGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTT 21513435 Query 42519 GTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCA 42578 || | || |||||||| | | | |||| |||||| | |||||||| || |||||| | Sbjct 21513436 TTACCCTATATGGGAAGCGACTTCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGA 21513495 Query 42579 GCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAACT 42638 ||| | || | |||||| | | ||| | | ||| |||| || || |||||||| Sbjct 21513496 GCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACGTGGGTCGTGAGTGGGAACT 21513555 Query 42639 TTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTC 42683 | | || || || | || ||||| ||||||| || || Sbjct 21513556 TAGTTTTYKTCTGGGTATACGCCCTTGGATTGTTGTTGCATATTC 21513600 Score = 111 bits (122), Expect = 5e-20 Identities = 133/177 (75%), Gaps = 8/177 (5%) Strand=Plus/Minus Query 42309 GACTAACAACCGTCTTTATGTTGGGTGGTTTGGTGTGCTGATGATTCCCTGTCTGCTCGC 42368 |||| | ||||||||||| |||| ||||||||||| ||| ||| |||| | | || Sbjct 21517487 GACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGAGGAT-CCCTACTTTATTGC 21517429 Query 42369 TGCTACCACCTGT---TTTATTGTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGG 42425 | || || | | |||||| | |||||||||||||| |||| | ||| |||||||| Sbjct 21517428 --CCACAACTTTTGTATTTATTATTGCTTTCATTGCTGCACCTCTG--AGATATTGATGG 21517373 Query 42426 CATTCGTGAACCTGTCTCTGGCTCTCTTCTGTATGGCAACAACATCATCTCTGGTGC 42482 |||||||||||| | ||||| | | | || ||||| ||||| || || ||| |||| Sbjct 21517372 TATTCGTGAACCTATTTCTGGATTTTTACTTTATGGAAACAATATTATTTCTAGTGC 21517316 >seq376 Length=2445099 Score = 131 bits (144), Expect = 5e-26 Identities = 136/180 (76%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 42289 TTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTTGGTGTGCTG 42348 |||||||||||| | || ||| | ||||||||||| |||| ||||||||||| || Sbjct 1076006 TTTTGTAACTGGATAACYAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1076065 Query 42349 ATGATTCCCTGTCTGCTCGCTGCTACCACCTGT-TTTATTGTCGCTTTCATTGCTGCCCC 42407 ||||| || | | | | | || | ||| |||||| | |||||||||||||| || Sbjct 1076066 ATGATCCCTACTTTATTGACCKCAACTTC-TGTATTTATTATTGCTTTCATTGCTGCACC 1076124 Query 42408 TCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTATGGCAACAA 42467 | |||||| |||||||| |||| ||||||||| ||||| ||| | || ||||| | ||| Sbjct 1076125 TYYGGTAGATATTGATGGTATTCRTGAACCTGTTTCTGGATCTTTACTTTATGGAARCAA 1076184 >seq1185 Length=2433339 Score = 127 bits (140), Expect = 6e-25 Identities = 136/180 (76%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 42289 TTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTTGGTGTGCTG 42348 |||||||||||| | || ||| | ||||||||||| |||| ||||||||||| || Sbjct 1074383 TTTTGTAACTGGATAACYAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1074442 Query 42349 ATGATTCCCTGTCTGCTCGCTGCTACCACCTGT-TTTATTGTCGCTTTCATTGCTGCCCC 42407 ||||| || | | | | | || | ||| |||||| | |||||||||||||| || Sbjct 1074443 ATGATCCCTACTTTATTGACCTCAACTTC-TGTATTTATTATTGCTTTCATTGCTGCACC 1074501 Query 42408 TCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTATGGCAACAA 42467 | |||||| |||||||| |||| ||||||||| ||||| ||| | || ||||| | ||| Sbjct 1074502 TTYGGTAGATATTGATGGTATTCRTGAACCTGTTTCTGGATCTTTACTTTATGGAARCAA 1074561 >seq14 Length=29158859 Score = 127 bits (140), Expect = 6e-25 Identities = 136/180 (76%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 42289 TTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTTGGTGTGCTG 42348 |||||||||||| | || ||| | ||||||||||| |||| ||||||||||| || Sbjct 26472196 TTTTGTAACTGGATAACYAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 26472255 Query 42349 ATGATTCCCTGTCTGCTCGCTGCTACCACCTGT-TTTATTGTCGCTTTCATTGCTGCCCC 42407 ||||| || | | | | | || | ||| |||||| | |||||||||||||| || Sbjct 26472256 ATGATCCCTACTTTATTGACCTCAACTTC-TGTATTTATTATTGCTTTCATTGCTGCACC 26472314 Query 42408 TCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTATGGCAACAA 42467 | |||||| |||||||| |||| ||||||||| ||||| ||| | || ||||| | ||| Sbjct 26472315 TTYGGTAGATATTGATGGTATTCRTGAACCTGTTTCTGGATCTTTACTTTATGGAARCAA 26472374 >seq629 Length=2291386 Score = 80.6 bits (88), Expect = 8e-11 Identities = 93/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 42940 AATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGGT 42999 ||||| || |||| || ||||||||||| || || || || || || || || |||||| Sbjct 2030033 AATTACGGTTACAGATTTGGTCAAGAGGAAGAAACCTACAATATCGTAGCGGCTCATGGT 2029974 Query 43000 TACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCACTT 43058 || ||||| | | |||||||||||||| | |||| || || || ||||| ||||| Sbjct 2029973 TATTTTGGCTGATTGATCTTCCAATATGC-TAGTTTGAACAACTCTCATTCTTTACACTT 2029915 Query 43059 CTT 43061 ||| Sbjct 2029914 CTT 2029912 >seq8 Length=29603939 Score = 80.6 bits (88), Expect = 8e-11 Identities = 93/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 42940 AATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGGT 42999 ||||| || |||| || ||||||||||| || || || || || || || || |||||| Sbjct 4091918 AATTACGGTTACAGATTTGGTCAAGAGGAAGAAACCTACAATATCGTAGCGGCTCATGGT 4091977 Query 43000 TACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCACTT 43058 || ||||| | | |||||||||||||| | |||| || || || ||||| ||||| Sbjct 4091978 TATTTTGGCTGATTGATCTTCCAATATGC-TAGTTTGAACAACTCTCATTCTTTACACTT 4092036 Query 43059 CTT 43061 ||| Sbjct 4092037 CTT 4092039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143530667730548