Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq1241 123 7e-24 seq13 120 9e-23 seq376 100 8e-17 >seq1241 Length=4265459 Score = 123 bits (136), Expect = 7e-24 Identities = 270/399 (68%), Gaps = 8/399 (2%) Strand=Plus/Plus Query 26452 GGATAGTGGT----GCTGTATATGCAACAAATATCCATGGTCTCATTCCTAGTCTGTAAG 26507 ||||| |||| | || ||||||||||| ||||| || | || || || | || Sbjct 4250358 GGATAATGGTAAGAGTTGAATATGCAACAACAATCCAAGGGCGTATACCCAGACGAAAAC 4250417 Query 26508 ATAGTTCCCACTGTCTCCCTGCATATGCTGCTACTCCTATTAAGAAGTGGAAGATAATGA 26567 |||||||||| | || | || ||||| || | ||||||||| | | ||| | Sbjct 4250418 TAAGTTCCCACTCACGACCCACGTAGCAAGCTACACCAAGTAAGAAGTGTAGAACAATTA 4250477 Query 26568 GTTGATATGGTCCGCCATTGTATAGCCACTCGTCCAGTGTGCCAGCTTCCCAGATCGGGT 26627 | | ||| || || |||||||||| ||| || || | | |||||||| || |||| Sbjct 4250478 GCTCATAAGGACCACCATTGTATAACCATTCATCAACAGAAGTCGCTTCCCATATAGGGT 4250537 Query 26628 AAAAATGTAGTCCGATTGCGTTAGAGGAGGGGACGACTGCTCCTGATATTATATTGTTTC 26687 |||| || | || || || ||| | || | | || | | || |||||| ||| Sbjct 4250538 AAAAGTGCAAACCTATAGCTGCAGAAGTAGGAATAATGGCACAAAAAATAATATTGCTTC 4250597 Query 26688 CGTACATTAACGAGCCGGAAACTGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTG 26747 | || | ||| || || ||||| || ||||| || ||||| ||||||| || ||||| | Sbjct 4250598 CATAAAGTAAAGATCCAGAAACAGGTTCACGAATACCATCAATATCTATTGGAGGTGCAG 4250657 Query 26748 CGATGAAGGCAAGTATAAA-ACATGTAGTGGCTG-CGAGTAAGCAGGGTATCATAAGCAC 26805 | ||||| |||| ||||| ||| | ||| || | | | ||| | || ||||| | || Sbjct 4250658 CAATGAAAGCAATAATAAATACA-GAAGTTGCGGTCAATAAAGTAAGG-ATCATCAAAAC 4250715 Query 26806 CCCGAACCATCCCACATAGAGACGGTTCTCAGTACTTGT 26844 || |||||||| | || ||| | || ||| | || || Sbjct 4250716 ACCAAACCATCCAATGTAAAGATGATTTTCAATGCTGGT 4250754 >seq13 Length=34719086 Score = 120 bits (132), Expect = 9e-23 Identities = 268/399 (67%), Gaps = 8/399 (2%) Strand=Plus/Minus Query 26452 GGATAGTGGT----GCTGTATATGCAACAAATATCCATGGTCTCATTCCTAGTCTGTAAG 26507 ||||| |||| | || ||||||||||| ||||| || | || || || || Sbjct 21513617 GGATAATGGTAAGAGYTGAATATGCAACAACAATCCAAGGGCGTATACCCAGAMRAAAAC 21513558 Query 26508 ATAGTTCCCACTGTCTCCCTGCATATGCTGCTACTCCTATTAAGAAGTGGAAGATAATGA 26567 |||||||||| | || | || ||||| || | ||||||||| | | ||| | Sbjct 21513557 TAAGTTCCCACTCACGACCCACGTAGCAAGCTACACCAAGTAAGAAGTGTAGAACAATTA 21513498 Query 26568 GTTGATATGGTCCGCCATTGTATAGCCACTCGTCCAGTGTGCCAGCTTCCCAGATCGGGT 26627 | | ||| || || |||||||||| ||| || || | | |||||||| || |||| Sbjct 21513497 GCTCATAAGGACCACCATTGTATAACCATTCATCAACAGAAGTCGCTTCCCATATAGGGT 21513438 Query 26628 AAAAATGTAGTCCGATTGCGTTAGAGGAGGGGACGACTGCTCCTGATATTATATTGTTTC 26687 |||| || | || || || ||| | || | | || | | || |||||| ||| Sbjct 21513437 AAAAGTGCAAACCTATAGCTGCAGAAGTAGGAATAATGGCACAAAAAATAATATTGCTTC 21513378 Query 26688 CGTACATTAACGAGCCGGAAACTGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTG 26747 | || | ||| || || ||||| || ||||| || ||||| ||||||| || ||||| | Sbjct 21513377 CATAAAGTAAAGATCCAGAAACAGGTTCACGAATACCATCAATATCTATTGGAGGTGCAG 21513318 Query 26748 CGATGAAGGCAAGTATAAA-ACATGTAGTGGCTG-CGAGTAAGCAGGGTATCATAAGCAC 26805 ||||| |||| ||||| ||| | ||| || | | | ||| | || ||||| | || Sbjct 21513317 YAATGAAAGCAATAATAAATACA-GAAGTTGCGGTCAATAAAGTAAGG-ATCATCAAAAC 21513260 Query 26806 CCCGAACCATCCCACATAGAGACGGTTCTCAGTACTTGT 26844 || |||||||| | || ||| | || ||| | || || Sbjct 21513259 ACCAAACCATCCAATGTAAAGATGATTTTCAATGCTGGT 21513221 Score = 80.6 bits (88), Expect = 8e-11 Identities = 123/170 (72%), Gaps = 8/170 (5%) Strand=Plus/Plus Query 26672 GATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACGTATGCCATCTATA 26731 || || ||||||||||| || | ||| | || |||| || ||||| || ||||| ||| Sbjct 21517322 GAAATAATATTGTTTCCATAAAGTAAAAATCCAGAAATAGGTTCACGAATACCATCAATA 21517381 Query 26732 TCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA---ACATGTAGTGGCTGCGAGTAAG 26788 ||| || | ||||| || ||||| |||| ||||| | | || |||| || | ||| Sbjct 21517382 TCT-CA-GAGGTGCAGCAATGAAAGCAATAATAAATACAAAAGTTGTGG--GCAATAAAG 21517437 Query 26789 CAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCTCAGT 26838 |||| ||| | | || || |||||||| | || |||||||| ||||| Sbjct 21517438 TAGGG-ATCCTCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGT 21517486 >seq376 Length=2445099 Score = 100 bits (110), Expect = 8e-17 Identities = 133/183 (73%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 26679 TATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACGTATGCCATCTATATCTACAG 26738 ||||| |||| || | ||| || || ||||| || ||| | || ||||| |||||||| Sbjct 1076186 TATTGYTTCCATAAAGTAAAGATCCAGAAACAGGTTCAYGAATACCATCAATATCTACCR 1076127 Query 26739 GCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAGTGGCTGCGAGTAA-GCAGGGTAT 26796 ||||| || ||||| |||| ||||| ||| | ||| | | | ||| | |||| || Sbjct 1076126 RAGGTGCAGCAATGAAAGCAATAATAAATACA-GAAGTTGMGGTCAATAAAGTAGGG-AT 1076069 Query 26797 CATAAGCACCCCGAACCATCCCACATAGAGACGGTTCTCAGTACTTGTAACCCACTCACA 26856 ||| | || || |||||||| | || |||||||| ||||| || || | ||| | ||| Sbjct 1076068 CATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTRGTTATCCAGTTACA 1076009 Query 26857 AAA 26859 ||| Sbjct 1076008 AAA 1076006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147709805645920