Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq1241 183 4e-41 seq13 174 2e-38 seq376 89.7 6e-13 seq1185 86.0 7e-12 seq14 86.0 7e-12 >seq1241 Length=4265459 Score = 183 bits (202), Expect = 4e-41 Identities = 258/357 (72%), Gaps = 8/357 (2%) Strand=Plus/Minus Query 155011 GGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCG-CTGCTGCTACATGCTTCATTGT 155069 || ||||| |||||| | ||||||| || | | | | | || || | || ||| | Sbjct 4250727 GGATGGTTTGGTGTTTTGATGATCC-TTACTTTATTGACCGCAACTTCTGTATTTATTAT 4250669 Query 155070 CGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTC 155129 || ||||||||||||||||| |||| |||||||||||||||||||| || |||| || Sbjct 4250668 TGCTTTCATTGCTGCACCTCCAATAGATATTGATGGTATTCGTGAACCTGTTTCTGGATC 4250609 Query 155130 TTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGG 155189 |||| | ||||| | ||| || || | | |||| || | |||| ||| || || || Sbjct 4250608 TTTACTTTATGGAAGCAATATTATTTTTTGTGCCATTATTCCTACTTCTGCAGCTATAGG 4250549 Query 155190 TCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGG 155249 | | ||||| || ||||| |||||||| | || ||||||| ||||| ||||||||||| Sbjct 4250548 TTTGCACTTTTACCCTATATGGGAAGCGACTTCTGTTGATGAATGGTTATACAATGGTGG 4250489 Query 155250 TCCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACT--GT-GGTCG 155306 ||||| | || | || | |||||| | | || | ||| | || || ||||| Sbjct 4250488 TCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT---AGCTTGCTACGTGGGTCG 4250432 Query 155307 TCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTC 155363 | ||||||||||| || ||||| || || || |||||||| ||||||||| || Sbjct 4250431 TGAGTGGGAACTTAGTTTTCGTCTGGGTATACGCCCTTGGATTGTTGTTGCATATTC 4250375 >seq13 Length=34719086 Score = 174 bits (192), Expect = 2e-38 Identities = 255/357 (71%), Gaps = 8/357 (2%) Strand=Plus/Plus Query 155011 GGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCG-CTGCTGCTACATGCTTCATTGT 155069 || ||||| |||||| | ||||||| || | | | | | || || | || ||| | Sbjct 21513248 GGATGGTTTGGTGTTTTGATGATCC-TTACTTTATTGACCGCAACTTCTGTATTTATTAT 21513306 Query 155070 CGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTC 155129 || |||||| |||||||||| |||| |||||||||||||||||||| || |||| || Sbjct 21513307 TGCTTTCATTRCTGCACCTCCAATAGATATTGATGGTATTCGTGAACCTGTTTCTGGATC 21513366 Query 155130 TTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGG 155189 |||| | ||||| | ||| || || | | |||| || | |||| ||| || || || Sbjct 21513367 TTTACTTTATGGAAGCAATATTATTTTTTGTGCCATTATTCCTACTTCTGCAGCTATAGG 21513426 Query 155190 TCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGG 155249 | | ||||| || ||||| |||||||| | || ||||||| ||||| ||||||||||| Sbjct 21513427 TTTGCACTTTTACCCTATATGGGAAGCGACTTCTGTTGATGAATGGTTATACAATGGTGG 21513486 Query 155250 TCCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACT--GT-GGTCG 155306 ||||| | || | || | |||||| | | || | ||| | || || ||||| Sbjct 21513487 TCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT---AGCTTGCTACGTGGGTCG 21513543 Query 155307 TCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTC 155363 | ||||||||||| || ||| || || || |||||||| ||||||||| || Sbjct 21513544 TGAGTGGGAACTTAGTTTTYKTCTGGGTATACGCCCTTGGATTGTTGTTGCATATTC 21513600 Score = 87.8 bits (96), Expect = 2e-12 Identities = 82/102 (80%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 155062 TTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGTGAACCCGTC 155121 || ||| | || |||||||||||||||| || ||| |||||||||||||||||||| | Sbjct 21517414 TTTATTATTGCTTTCATTGCTGCACCTC-TG-AGATATTGATGGTATTCGTGAACCTATT 21517357 Query 155122 GCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCT 155163 |||| | |||| | ||||| ||||| || || ||| ||||| Sbjct 21517356 TCTGGATTTTTACTTTATGGAAACAATATTATTTCTAGTGCT 21517315 >seq376 Length=2445099 Score = 89.7 bits (98), Expect = 6e-13 Identities = 112/157 (71%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 154991 CTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTG 155050 |||| ||||| | || | || ||||| |||||| | ||||||||| | | | Sbjct 1076028 CTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCK 1076087 Query 155051 CTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTC 155110 | || | || ||| | || ||||||||||||||| ||||| ||||||||||||| Sbjct 1076088 CAACTTCTGTATTTATTATTGCTTTCATTGCTGCACCTYYGGTAGATATTGATGGTATTC 1076147 Query 155111 GTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAA 155147 |||||| || |||| |||||| | ||||| | ||| Sbjct 1076148 RTGAACCTGTTTCTGGATCTTTACTTTATGGAARCAA 1076184 >seq1185 Length=2433339 Score = 86.0 bits (94), Expect = 7e-12 Identities = 112/157 (71%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 154991 CTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTG 155050 |||| ||||| | || | || ||||| |||||| | ||||||||| | | | Sbjct 1074405 CTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCT 1074464 Query 155051 CTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTC 155110 | || | || ||| | || ||||||||||||||| ||||| ||||||||||||| Sbjct 1074465 CAACTTCTGTATTTATTATTGCTTTCATTGCTGCACCTTYGGTAGATATTGATGGTATTC 1074524 Query 155111 GTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAA 155147 |||||| || |||| |||||| | ||||| | ||| Sbjct 1074525 RTGAACCTGTTTCTGGATCTTTACTTTATGGAARCAA 1074561 >seq14 Length=29158859 Score = 86.0 bits (94), Expect = 7e-12 Identities = 112/157 (71%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 154991 CTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTG 155050 |||| ||||| | || | || ||||| |||||| | ||||||||| | | | Sbjct 26472218 CTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCT 26472277 Query 155051 CTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTC 155110 | || | || ||| | || ||||||||||||||| ||||| ||||||||||||| Sbjct 26472278 CAACTTCTGTATTTATTATTGCTTTCATTGCTGCACCTTYGGTAGATATTGATGGTATTC 26472337 Query 155111 GTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAA 155147 |||||| || |||| |||||| | ||||| | ||| Sbjct 26472338 RTGAACCTGTTTCTGGATCTTTACTTTATGGAARCAA 26472374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584826054639560