Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq1241 134 4e-27 seq13 131 5e-26 seq376 102 2e-17 seq1185 98.7 3e-16 seq14 98.7 3e-16 >seq1241 Length=4265459 Score = 134 bits (148), Expect = 4e-27 Identities = 272/401 (68%), Gaps = 2/401 (0%) Strand=Plus/Plus Query 41116 GAGCTGTGTATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACT 41175 ||| || ||||| |||| ||||| || | ||||| || | | ||||||||||| Sbjct 4250370 GAGTTGAATATGCAACAACAATCCAAGGGCGTATACCCAGACGAAAACTAAGTTCCCACT 4250429 Query 41176 GTCTACCAGCGTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTC 41235 | ||| |||| ||||| || | ||| ||||| | ||||| || | ||| || | Sbjct 4250430 CACGACCCACGTAGCAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGAC 4250489 Query 41236 CGCCGTTGTATAGCCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTC 41295 | || ||||||| ||| || || | | |||||||| || ||||| || || | | Sbjct 4250490 CACCATTGTATAACCATTCATCAACAGAAGTCGCTTCCCATATAGGGTAAAAGTGCAAAC 4250549 Query 41296 CGATTGCGTTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACG 41355 | || || ||| | |||| | || | | | ||||||||| | || || | ||| | Sbjct 4250550 CTATAGCTGCAGAAGTAGGAATAATGGCACAAAAAATAATATTGCTTCCATAAAGTAAAG 4250609 Query 41356 AGCCGGAAACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGA 41415 | || ||||| || ||||| || ||||| ||||||| || ||||| || || || || | Sbjct 4250610 ATCCAGAAACAGGTTCACGAATACCATCAATATCTATTGGAGGTGCAGCAATGAAAGCAA 4250669 Query 41416 TTATGAA-ACATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCT 41474 | || || ||| | || || || | ||| | | ||||| | ||||||||||| || Sbjct 4250670 TAATAAATACA-GAAGTTGCGGTCAATAAAGTAAGGATCATCAAAACACCAAACCATCCA 4250728 Query 41475 ACGTATAGGCGGTTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 | ||| || | || || |||| || | | || ||||||| Sbjct 4250729 ATGTAAAGATGATTTTCAATGCTGGTTATCTAGCTACAAAA 4250769 >seq13 Length=34719086 Score = 131 bits (144), Expect = 5e-26 Identities = 270/401 (67%), Gaps = 2/401 (0%) Strand=Plus/Minus Query 41116 GAGCTGTGTATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACT 41175 ||| || ||||| |||| ||||| || | ||||| || | ||||||||||| Sbjct 21513605 GAGYTGAATATGCAACAACAATCCAAGGGCGTATACCCAGAMRAAAACTAAGTTCCCACT 21513546 Query 41176 GTCTACCAGCGTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTC 41235 | ||| |||| ||||| || | ||| ||||| | ||||| || | ||| || | Sbjct 21513545 CACGACCCACGTAGCAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGAC 21513486 Query 41236 CGCCGTTGTATAGCCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTC 41295 | || ||||||| ||| || || | | |||||||| || ||||| || || | | Sbjct 21513485 CACCATTGTATAACCATTCATCAACAGAAGTCGCTTCCCATATAGGGTAAAAGTGCAAAC 21513426 Query 41296 CGATTGCGTTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACG 41355 | || || ||| | |||| | || | | | ||||||||| | || || | ||| | Sbjct 21513425 CTATAGCTGCAGAAGTAGGAATAATGGCACAAAAAATAATATTGCTTCCATAAAGTAAAG 21513366 Query 41356 AGCCGGAAACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGA 41415 | || ||||| || ||||| || ||||| ||||||| || ||||| | || || || | Sbjct 21513365 ATCCAGAAACAGGTTCACGAATACCATCAATATCTATTGGAGGTGCAGYAATGAAAGCAA 21513306 Query 41416 TTATGAA-ACATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCT 41474 | || || ||| | || || || | ||| | | ||||| | ||||||||||| || Sbjct 21513305 TAATAAATACA-GAAGTTGCGGTCAATAAAGTAAGGATCATCAAAACACCAAACCATCCA 21513247 Query 41475 ACGTATAGGCGGTTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 | ||| || | || || |||| || | | || ||||||| Sbjct 21513246 ATGTAAAGATGATTTTCAATGCTGGTTATCTAGCTACAAAA 21513206 >seq376 Length=2445099 Score = 102 bits (112), Expect = 2e-17 Identities = 131/182 (72%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 41335 TATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCACGTATGCCATCTATATCTACAG 41394 ||||| | || || | ||| || || ||||| || ||| | || ||||| |||||||| Sbjct 1076186 TATTGYTTCCATAAAGTAAAGATCCAGAAACAGGTTCAYGAATACCATCAATATCTACCR 1076127 Query 41395 GCGGTGCTGCGATAAAGGCGATTATGAA-ACATGTGGTAGCAGTTAGTAATGCTGGAATC 41453 ||||| || || || || || || || ||| | || | || | ||| | || ||| Sbjct 1076126 RAGGTGCAGCAATGAAAGCAATAATAAATACA-GAAGTTGMGGTCAATAAAGTAGGGATC 1076068 Query 41454 ATTAGCACACCAAACCAACCTACGTATAGGCGGTTGTCGGTGCTAGTGACCCAGTTACAA 41513 || | ||||||||||| || | ||| || ||||| || ||||| || | |||||||||| Sbjct 1076067 ATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTRGTTATCCAGTTACAA 1076008 Query 41514 AA 41515 || Sbjct 1076007 AA 1076006 >seq1185 Length=2433339 Score = 98.7 bits (108), Expect = 3e-16 Identities = 131/182 (72%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 41335 TATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCACGTATGCCATCTATATCTACAG 41394 ||||| | || || | ||| || || ||||| || ||| | || ||||| |||||||| Sbjct 1074563 TATTGYTTCCATAAAGTAAAGATCCAGAAACAGGTTCAYGAATACCATCAATATCTACCR 1074504 Query 41395 GCGGTGCTGCGATAAAGGCGATTATGAA-ACATGTGGTAGCAGTTAGTAATGCTGGAATC 41453 ||||| || || || || || || || ||| | || | || | ||| | || ||| Sbjct 1074503 AAGGTGCAGCAATGAAAGCAATAATAAATACA-GAAGTTGAGGTCAATAAAGTAGGGATC 1074445 Query 41454 ATTAGCACACCAAACCAACCTACGTATAGGCGGTTGTCGGTGCTAGTGACCCAGTTACAA 41513 || | ||||||||||| || | ||| || ||||| || ||||| || | |||||||||| Sbjct 1074444 ATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTRGTTATCCAGTTACAA 1074385 Query 41514 AA 41515 || Sbjct 1074384 AA 1074383 >seq14 Length=29158859 Score = 98.7 bits (108), Expect = 3e-16 Identities = 131/182 (72%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 41335 TATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCACGTATGCCATCTATATCTACAG 41394 ||||| | || || | ||| || || ||||| || ||| | || ||||| |||||||| Sbjct 26472376 TATTGYTTCCATAAAGTAAAGATCCAGAAACAGGTTCAYGAATACCATCAATATCTACCR 26472317 Query 41395 GCGGTGCTGCGATAAAGGCGATTATGAA-ACATGTGGTAGCAGTTAGTAATGCTGGAATC 41453 ||||| || || || || || || || ||| | || | || | ||| | || ||| Sbjct 26472316 AAGGTGCAGCAATGAAAGCAATAATAAATACA-GAAGTTGAGGTCAATAAAGTAGGGATC 26472258 Query 41454 ATTAGCACACCAAACCAACCTACGTATAGGCGGTTGTCGGTGCTAGTGACCCAGTTACAA 41513 || | ||||||||||| || | ||| || ||||| || ||||| || | |||||||||| Sbjct 26472257 ATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTRGTTATCCAGTTACAA 26472198 Query 41514 AA 41515 || Sbjct 26472197 AA 26472196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143700265211034