Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq1241 168 8e-37 seq13 163 3e-35 seq629 84.2 2e-11 seq8 84.2 2e-11 >seq1241 Length=4265459 Score = 168 bits (186), Expect = 8e-37 Identities = 267/377 (71%), Gaps = 8/377 (2%) Strand=Plus/Plus Query 67950 GAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGA 68009 || ||||| ||| |||||||| || ||||| ||||| || ||||||||||| |||| Sbjct 4250375 GAATATGCAACAACAATCCAAGGGCGTATACCCAGACGAAAACTAAGTTCCCACTCACGA 4250434 Query 68010 -CCAC--AGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCA 68066 |||| || | ||| | || | | |||||| | || | || | |||| ||| Sbjct 4250435 CCCACGTAGCAAGCT---ACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCA 4250491 Query 68067 CCATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCG 68126 ||||| || ||||| ||||| | || | |||||||| ||||| || ||||| | ||| Sbjct 4250492 CCATTGTATAACCATTCATCAACAGAAGTCGCTTCCCATATAGGGTAAAAGTGCAAACCT 4250551 Query 68127 ATTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAA 68186 || || ||| |||||| || |||| | |||| || ||| | || || | | || Sbjct 4250552 ATAGCTGCAGAAGTAGGAATAATGGCACAAAAAATAATATTGCTTCCATAAAGTAAAGAT 4250611 Query 68187 CCTGCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATG 68246 || | ||||||||| | |||||||| ||||| | ||||||||| |||||||| ||||| Sbjct 4250612 CCAGAAACAGGTTCACGAATACCATCAATATCTATTGGAGGTGCAGCAATGAAAGCAATA 4250671 Query 68247 ATGAAGCAAGTTGCTGCTG-CGAGCAAGCAAGGAATCATCAACACACCGAACCAACCAAC 68305 || || || | ||| | | | ||| |||| |||||||| ||||| ||||| |||| Sbjct 4250672 ATAAATACAGAAGTTGCGGTCAATAAAGTAAGG-ATCATCAAAACACCAAACCATCCAAT 4250730 Query 68306 ATAGATGCGATTGTCAA 68322 || | |||| |||| Sbjct 4250731 GTAAAGATGATTTTCAA 4250747 >seq13 Length=34719086 Score = 163 bits (180), Expect = 3e-35 Identities = 267/382 (70%), Gaps = 8/382 (2%) Strand=Plus/Minus Query 67945 GAGCAGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACT 68004 ||| || ||||| ||| |||||||| || ||||| ||| || ||||||||||| Sbjct 21513605 GAGYTGAATATGCAACAACAATCCAAGGGCGTATACCCAGAMRAAAACTAAGTTCCCACT 21513546 Query 68005 GACGA-CCAC--AGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAG 68061 |||| |||| || | ||| | || | | |||||| | || | || | ||| Sbjct 21513545 CACGACCCACGTAGCAAGCT---ACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAG 21513489 Query 68062 GTCCACCATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAA 68121 | |||||||| || ||||| ||||| | || | |||||||| ||||| || ||||| | Sbjct 21513488 GACCACCATTGTATAACCATTCATCAACAGAAGTCGCTTCCCATATAGGGTAAAAGTGCA 21513429 Query 68122 GACCGATTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGA 68181 ||| || || ||| |||||| || |||| | |||| || ||| | || || | | Sbjct 21513428 AACCTATAGCTGCAGAAGTAGGAATAATGGCACAAAAAATAATATTGCTTCCATAAAGTA 21513369 Query 68182 GCGAACCTGCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATG 68241 || || | ||||||||| | |||||||| ||||| | ||||||||| | |||||| | Sbjct 21513368 AAGATCCAGAAACAGGTTCACGAATACCATCAATATCTATTGGAGGTGCAGYAATGAAAG 21513309 Query 68242 CAATGATGAAGCAAGTTGCTGCTG-CGAGCAAGCAAGGAATCATCAACACACCGAACCAA 68300 |||| || || || | ||| | | | ||| |||| |||||||| ||||| ||||| Sbjct 21513308 CAATAATAAATACAGAAGTTGCGGTCAATAAAGTAAGG-ATCATCAAAACACCAAACCAT 21513250 Query 68301 CCAACATAGATGCGATTGTCAA 68322 |||| || | |||| |||| Sbjct 21513249 CCAATGTAAAGATGATTTTCAA 21513228 >seq629 Length=2291386 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 67590 GAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACA 67649 |||||||| ||| ||||| ||||||||||| | || || || |||||||| || || Sbjct 2029930 GAGTTGTTCAAACTAGCATATTGGAAGATCAATCAGCCAAAATAACCATGAGCCGCTACG 2029989 Query 67650 ATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTT 67693 || ||||| || ||||| ||||| || || |||||||||| || Sbjct 2029990 ATATTGTAGGTTTCTTCCTCTTGACCAAATCTGTAACCGTAATT 2030033 >seq8 Length=29603939 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 67590 GAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACA 67649 |||||||| ||| ||||| ||||||||||| | || || || |||||||| || || Sbjct 4092021 GAGTTGTTCAAACTAGCATATTGGAAGATCAATCAGCCAAAATAACCATGAGCCGCTACG 4091962 Query 67650 ATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTT 67693 || ||||| || ||||| ||||| || || |||||||||| || Sbjct 4091961 ATATTGTAGGTTTCTTCCTCTTGACCAAATCTGTAACCGTAATT 4091918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566938334363160