Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq111 140 6e-28 seq317 122 2e-22 seq104 114 2e-20 seq350 86.0 1e-11 >seq111 Length=1131199 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| ||||||||||| |||| |||||| || | ||| || || || || || Sbjct 723096 ATACCACCCCTCAATCGAAGGACCAAATGCAAAGTTGACTCCTTTTGGATGTTGTAATCC 723155 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || || ||| || ||||| || |||||||| || |||||||| ||||| ||| Sbjct 723156 GCCAGAGTCCTGCCATCTTCCAATTGCTTACCGGCAAAGATCAATCTCTGCTGATCTGGA 723215 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || || ||||| ||||| | ||| | || ||| ||||||||| ||| Sbjct 723216 GGAATACCCTCCTTGTCTTGAATTTTTGCTTTCACGTTRTCAATCGTATCGGAACTCTCG 723275 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || |||||||| || || || || |||||||| Sbjct 723276 ACCTCCAGGGTAATTGTCTTCCCTGTTAGGGTCTTCACGAAAATTTGCAT 723325 Score = 113 bits (124), Expect = 8e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||| ||||||||||| || |||| || | || | ||| || || ||||||||| Sbjct 723552 ATACCTCCTCTCAATCGGAGAACCAAGTGGAGAGTCGACTCCTTCTGGATGTTATAGTCG 723611 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || || | || || ||||| || ||||| || || | |||||| || ||||| Sbjct 723612 GCTAGGGTGCGGCCGTCCTCCAATTGCTTGCCGGCGAAGATAAGTCTCTGCTGGTCAGGG 723671 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||| || ||||| || || |||| || | ||| || || |||||| ||| Sbjct 723672 GGAATTCCCTCCTTATCCTGGATCTTGGCCTTAACATTATCGATCGTGTCGGAACTCTCG 723731 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || || || || || ||||| ||||| || || || ||||| Sbjct 723732 ACTTCGAGGGTGATCGTCTTCCCGGTTAGGGTTTTGACGAAGATCTGCAT 723781 >seq317 Length=1923123 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||| ||||||||||| || |||| || | || | ||| || ||||||||| ||| Sbjct 1310851 ATACCTCCTCTCAATCGCAGAACCAAGTGGAGAGTCGACTCCTTCTGAATATTATAATCG 1310910 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || |||| ||| || || || ||||||||||| || | ||||| || || || Sbjct 1310911 GCTAGGGTTCGGCCATCCTCCAACTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCCGGG 1310970 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||| || ||||| || || |||| || | || |||||| || || ||| Sbjct 1310971 GGAATTCCCTCCTTATCCTGGATCTTGGCCTTGACGTTGTCAATAGTGTCCGAGCTCTCC 1311030 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||| || || || || ||||| ||||| || || || ||||| Sbjct 1311031 ACTTCCAGAGTAATCGTMTTCCCGGTTAGGGTTTTGACGAAGATCTGCAT 1311080 Score = 96.9 bits (106), Expect = 6e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || ||||| || |||||||| || | ||||| ||||| ||||| || || || || Sbjct 1310469 ATCCTCCAATTGCTTCCCGGCAAAGATGAGCCTCTGCTGATCCGGAGGAATGCCCTCCTT 1310528 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 || || || || | || | ||| ||||||||||||| ||| || || |||||||| Sbjct 1310529 GTCCTGAATCTTCGCCTTCACATTGTCAATAGTATCGGAACTCTCGACCTCCAGAGTTAT 1310588 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || || || |||||||| Sbjct 1310589 GGTCTTCCCGGTAAGGGTCTTCACGAAAATTTGCAT 1310624 >seq104 Length=1555027 Score = 114 bits (126), Expect = 2e-20 Identities = 164/230 (71%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||| ||||||||||| || |||| || | || | ||| || ||||||||| ||| Sbjct 784232 ATACCTCCTCTCAATCGCAGAACCAAGTGGAGAGTCGACTCCTTCTGAATATTATAATCG 784291 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || |||| ||| || || || ||||||||||| || | ||||| || || || Sbjct 784292 GCTAGGGTTCGGCCATCCTCCAACTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCCGGG 784351 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||| || ||||| || || |||| || | || |||||| || || ||| Sbjct 784352 GGAATTCCCTCCTTATCCTGGATCTTGGCCTTGACGTTGTCAATAGTGTCCGAGCTCTCC 784411 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||| || || || || ||||| | ||| || || || ||||| Sbjct 784412 ACTTCCAGAGTAATCGTCTTCCCGGTTAG-GGTTTRACGAAGATCTGCAT 784460 >seq350 Length=1502417 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || ||||| || | | |||| | ||| || |||||||| ||||||||||| |||||| Sbjct 383316 ATGTTATAATCTGCAAGAGTTCGACCATCTTCCAATTGTTTACCGGCAAAAATCAATCTC 383375 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTG 193270 |||||||||||||| || ||||| ||||| || Sbjct 383376 TGTTGATCAGGAGGGATGCCTTCCTTATCCTG 383407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899640331654320