Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq111 104 3e-17 seq931 100 4e-16 seq296 95.1 2e-14 seq12 95.1 2e-14 seq10 89.7 8e-13 seq4 86.0 9e-12 >seq111 Length=1131199 Score = 104 bits (114), Expect = 3e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || | || || || || ||||| | || ||||| ||| Sbjct 723325 ATGCAAATTTTCGTGAAGACCCTAACAGGGAAGACAATTACCCTGGAGGTCGAGAGTTCC 723266 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||||||||| ||||| ||||| || || || || |||||||| || Sbjct 723265 GATACGATTGAYAACGTGAAAGCAAAAATTCAAGACAAGGAGGGTATTCCTCCAGATCAG 723206 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||| | |||||||||||| | |||||| ||| ||| | | ||||| | Sbjct 723205 CAGAGATTGATCTTTGCCGGTAAGCAATTGGAAGATGGCAGGACTCTGGCGGATTACA-- 723148 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 | ||||||| ||| | || | ||||| || | |||| || || ||| Sbjct 723147 ACATCCAAAAGGAGTCAACTTTGCATTTGGTCCTTCGATTGAGGGGTGGT 723098 >seq931 Length=1020267 Score = 100 bits (110), Expect = 4e-16 Identities = 110/155 (71%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || |||||||||||||| || || | || || ||| ||| Sbjct 506068 ATGCAAATCTTTGTGAARACCTTGACTGGAAAAACCATYACCCTMGARGTTGAAAGYTCT 506009 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || || || || || || || ||||| || ||||| || Sbjct 506008 GAYACWATTGATAATGTSAARGCCAARATCCARGACAAGGAGGGCATTCCCCCAGACCAR 505949 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 ||||| |||| | ||| || |||||||| || || Sbjct 505948 CAAAGGYTGATCTTTGCWGGCAAGCAGCTTGAGGA 505914 >seq296 Length=1448965 Score = 95.1 bits (104), Expect = 2e-14 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || ||||||||||| || || || || || || || || |||| Sbjct 597000 ATGCAGATCTTTGTGAAGACATTGACTGGGAAGACGATAACGTTGGAGGTAGAGAGTTCT 596941 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || |||||| || || || || || || ||||| ||||| || || Sbjct 596940 GATACCATTGATAATGTGAAAGCAAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAG 596881 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| | || | ||||||||||||||| || || || ||| | | ||||| | Sbjct 596880 CAGAGACTCATCTTTGCCGGTAAGCAGCTGGAGGACGGAAGGACTCTTGCGGATTACA-- 596823 Query 156003 ATATCCAAA--GAGGCGACGCTTCA 156025 | ||||||| ||| | || ||||| Sbjct 596822 ACATCCAAAAGGAGTCTACCCTTCA 596798 >seq12 Length=31678690 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 155913 CAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTC 155972 || ||||| |||||||| ||||| || ||||| |||||||||| |||||||||||| | Sbjct 4925886 CAGGATAAGGAAGGCATCCCTCCTGATCAACAGAGATTGATTTTTGCCGGTAAGCAATTG 4925827 Query 155973 GAAGATACCAGAACTTTATCAGATTATAATATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 |||||| ||||| | |||||||||| || || ||| | |||||||| | || Sbjct 4925826 GAAGATGGTCGAACTCTTGCAGATTATAACATCCAGAAGGAGTCAACGCTTCACCTKGTC 4925767 Query 156033 TTAAGATTAAGAGGCGG 156049 || || | ||||| || Sbjct 4925766 TTGAGGCTGAGAGGAGG 4925750 >seq10 Length=33391235 Score = 89.7 bits (98), Expect = 8e-13 Identities = 90/115 (78%), Gaps = 4/115 (3%) Strand=Plus/Plus Query 155913 CAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTC 155972 || |||||||||||||| ||||| || ||||| |||||||||| ||| |||||||| | Sbjct 21109210 CAGGATAAAGAAGGCATCCCTCCTGATCAACAGAGATTGATTTTTGCTGGTAAGCAATTG 21109269 Query 155973 GAAGATACCAGAACTTTATCAGATTATAATATATCCAAA--GAGGCGACGCTTCA 156025 |||||| | ||||| | | ||||||| | ||||||| ||| | || ||||| Sbjct 21109270 GAAGATGGCCGAACTCTTGCGGATTATA--ACATCCAAAAGGAGTCAACACTTCA 21109322 >seq4 Length=23020739 Score = 86.0 bits (94), Expect = 9e-12 Identities = 137/203 (67%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || | || || || || || || | || || || ||| Sbjct 9341456 ATGCARATWTTTGTGAARACMCTRACAGGRAAGACRATYACTCTGGAGGTYGAGAGCTCT 9341515 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||||||||| ||| || || || || || || || || || || || Sbjct 9341516 GAYACTATTGAYAACGTGAAAGCTAAGATTCAGGACAAGGAGGGTATCCCACCGGACCAG 9341575 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||| | ||| || || |||||||| ||| | || | | ||||||||| Sbjct 9341576 CAGAGATTGATCTTTGCTGGGAAACAGCTCGAGGATGGTCGTACCCTTGCCGATTATAAT 9341635 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 || |||||| | || || || Sbjct 9341636 ATTCAGAAAGAGTCTACCCTCCA 9341658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731860555351600