Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq317 111 3e-19 seq4 102 2e-16 seq111 96.9 7e-15 seq10 96.9 7e-15 seq350 91.5 3e-13 seq104 89.7 1e-12 seq12 87.8 4e-12 seq105 86.0 1e-11 seq7 86.0 1e-11 >seq317 Length=1923123 Score = 111 bits (122), Expect = 3e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 192319 AGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGT 192378 ||||| | || | ||| | |||| |||||| ||| |||||||| | | || || Sbjct 1310179 AGACGAAGGACAAGATGGAGGGTAGACTCTTTCTGGATGTTATAATCTGCAAGGGTGCGA 1310238 Query 192379 TCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCT 192438 |||| || | ||||| ||||||||||| | ||||| || || ||||| || ||||| Sbjct 1310239 CCATCCTCAAGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCCGGTGGGATCCCTTCC 1310298 Query 192439 TTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTA 192498 ||||| || || ||| ||| |||||| |||| || || || || || || ||| Sbjct 1310299 TTATCCTGGATCTTAGCTTTGACATTATCAATAGTGTCGGAGCTCTCAACCTCCAGGGTA 1310358 Query 192499 ATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || ||||| || |||| || || | ||||||||||||| Sbjct 1310359 ATTGTTTTCCCTGTTAGGGTCTTCACAAATATCTGCATT 1310397 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| ||||| | || | || || || | ||| | ||| || ||||||||||| Sbjct 1310851 ATACCTCCTCTCAATCGCAGAACCAAGTGGAGAGTCGACTCCTTCTGAATATTATAATCG 1310910 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || ||||| |||| ||||| || || || |||||||| | ||||| || || || Sbjct 1310911 GCTAGGGTTCGGCCATCCTCCAACTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCCGGG 1310970 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| || ||||| || || || || || || |||| || || || Sbjct 1310971 GGAATTCCCTCCTTATCCTGGATCTTGGCCTTGACGTTGTCAATAGTGTCCGAGCTCTCC 1311030 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| |||||||| || || || |||| ||||| | || |||||||| Sbjct 1311031 ACTTCCAGAGTAATCGTMTTCCCGGTTAGGGTTTTGACGAAGATCTGCAT 1311080 >seq4 Length=23020739 Score = 102 bits (112), Expect = 2e-16 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | |||||| | || | || | |||| |||||| ||||||||||| | Sbjct 9341683 ACCACCACGAAGACGAAGGACAAGGTGGAGGGTAGACTCTTTCTGAATATTATAATCGGC 9341624 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | || || |||| || | ||||| ||||||||||| |||||||| || || ||||| Sbjct 9341623 AAGGGTACGACCATCCTCGAGCTGTTTCCCAGCAAAGATCAATCTCTGCTGGTCCGGTGG 9341564 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || || || || || || || ||| ||| || || |||| || || || || Sbjct 9341563 GATACCCTCCTTGTCCTGAATCTTAGCTTTCACGTTRTCAATAGTRTCAGAGCTCTCRAC 9341504 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||| || || || || || | || || | ||| || ||||| Sbjct 9341503 CTCCAGAGTRATYGTCTTYCCTGTYAGKGTYTTCACAAAWATYTGCAT 9341456 >seq111 Length=1131199 Score = 96.9 bits (106), Expect = 7e-15 Identities = 150/228 (66%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | | || | || | || | |||| ||| || ||||| ||||| | Sbjct 722642 ACCACCMCKMARWCGAAGGACMAGGTGGAGRGTAGACTCYTTCTGRATATTRTAATCSGC 722701 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | || | |||| || | || || ||||||||||| |||||||| || || ||||| Sbjct 722702 MAGRGTMCKRCCATCYTCSARYTGYTTCCCAGCAAAGATCAATCTCTGCTGRTCCGGTGG 722761 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || || || || || || || ||| ||| || || |||| || || || || Sbjct 722762 GATACCCTCCTTGTCCTGAATCTTAGCTTTCACGTTRTCAATAGTRTCAGAGCTCTCRAC 722821 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||| || || || || || | || || | ||| |||||||| Sbjct 722822 CTCCAGAGTRATCGTCTTYCCTGTYAGKGTCTTCACAAAWATCTGCAT 722869 >seq10 Length=33391235 Score = 96.9 bits (106), Expect = 7e-15 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| |||||||| | | ||||| |||| |||||||| ||||||||||| || ||||| Sbjct 21109302 GATGTTATAATCCGCAAGAGTTCGGCCATCTTCCAATTGCTTACCAGCAAAAATCAATCT 21109243 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTG 192446 |||||||||||| || || ||||||||||| || Sbjct 21109242 CTGTTGATCAGGAGGGATGCCTTCTTTATCCTG 21109210 >seq350 Length=1502417 Score = 91.5 bits (100), Expect = 3e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| |||||||| | | ||||| |||| |||||||||||||| ||||| || ||||| Sbjct 383315 GATGTTATAATCTGCAAGAGTTCGACCATCTTCCAATTGTTTACCGGCAAAAATCAATCT 383374 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTG 192446 |||||||||||| || || ||||| ||||| || Sbjct 383375 CTGTTGATCAGGAGGGATGCCTTCCTTATCCTG 383407 >seq104 Length=1555027 Score = 89.7 bits (98), Expect = 1e-12 Identities = 158/230 (69%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| ||||| | || | || || || | ||| | ||| || ||||||||||| Sbjct 784232 ATACCTCCTCTCAATCGCAGAACCAAGTGGAGAGTCGACTCCTTCTGAATATTATAATCG 784291 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || ||||| |||| ||||| || || || |||||||| | ||||| || || || Sbjct 784292 GCTAGGGTTCGGCCATCCTCCAACTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCCGGG 784351 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| || ||||| || || || || || || |||| || || || Sbjct 784352 GGAATTCCCTCCTTATCCTGGATCTTGGCCTTGACGTTGTCAATAGTGTCCGAGCTCTCC 784411 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| |||||||| || || || ||| | | ||| | || |||||||| Sbjct 784412 ACTTCCAGAGTAATCGTCTTCCCGGTT-AGGGTTTRACGAAGATCTGCAT 784460 >seq12 Length=31678690 Score = 87.8 bits (96), Expect = 4e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| |||||||| | | ||||| |||| |||||||| ||||| ||||| || ||||| Sbjct 4925794 GATGTTATAATCTGCAAGAGTTCGACCATCTTCCAATTGCTTACCGGCAAAAATCAATCT 4925853 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTG 192446 |||||||||||| || || ||||| ||||| || Sbjct 4925854 CTGTTGATCAGGAGGGATGCCTTCCTTATCCTG 4925886 >seq105 Length=1713518 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || || | |||||| | || | ||| | |||| | |||| ||| ||||||||| Sbjct 257400 CCTCCACGAAGACGAAGCACGAGATGCAGGGTAGACACTTTGTGGATGTTATAATCACCC 257459 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | || | |||| || ||||| || |||||||| || | |||||| ||||| || || Sbjct 257460 AGCGTATGCCCATCCTCAAATTGCTTCCCAGCAAAAATGAGTCTCTGCTGATCGGGCGGG 257519 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATT 192464 | || ||||||||||| |||||| |||| ||||| Sbjct 257520 GTACCCTCTTTATCTTGGATTTTAGTTTTCACATT 257554 >seq7 Length=26383534 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || || | |||||| | || | ||| | |||| | |||| ||| ||||||||| Sbjct 16934625 CCTCCACGAAGACGAAGCACGAGATGCAGGGTAGACACTTTGTGGATGTTATAATCACCC 16934684 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | || | |||| || ||||| || |||||||| || | |||||| ||||| || || Sbjct 16934685 AGCGTATGCCCATCCTCAAATTGCTTCCCAGCAAAAATGAGTCTCTGCTGATCGGGCGGG 16934744 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATT 192464 | || ||||||||||| |||||| |||| ||||| Sbjct 16934745 GTACCCTCTTTATCTTGGATTTTAGTTTTCACATT 16934779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984464220323850