Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq317 104 4e-17 seq104 98.7 2e-15 seq4 93.3 8e-14 seq350 91.5 3e-13 seq10 89.7 9e-13 seq12 86.0 1e-11 seq111 84.2 4e-11 >seq317 Length=1923123 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| ||||| | ||| | || || || | ||| | ||| || |||||||||||| Sbjct 1310851 ATACCTCCTCTCAATCGCAGAACCAAGTGGAGAGTCGACTCCTTCTGAATATTATAATCG 1310910 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || | ||| | || ||||| || || || ||||| || | ||||| ||||| || Sbjct 1310911 GCTAGGGTTCGGCCATCCTCCAACTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCCGGG 1310970 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| || ||||| || || || || || || ||||| || || || Sbjct 1310971 GGAATTCCCTCCTTATCCTGGATCTTGGCCTTGACGTTGTCAATAGTGTCCGAGCTCTCC 1311030 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| |||||||| || || || |||| ||||| | ||| |||||||| Sbjct 1311031 ACTTCCAGAGTAATCGTMTTCCCGGTTAGGGTTTTGACGAAGATCTGCAT 1311080 Score = 100 bits (110), Expect = 5e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 171873 GTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCA 171932 |||| |||||| || |||||||||| | | || | || || | ||||| ||| Sbjct 1310200 GTAGACTCTTTCTGGATGTTATAATCTGCAAGGGTGCGACCATCCTCAAGCTGTTTCCCA 1310259 Query 171933 GCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTT 171992 ||||| || | ||||| ||||| ||||| || ||||| ||||| || || ||| ||| Sbjct 1310260 GCAAAGATCAGCCTCTGCTGGTCCGGTGGGATCCCTTCCTTATCCTGGATCTTAGCTTTG 1310319 Query 171993 ACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTT 172052 |||||| ||||| || || || || || || ||||| ||||| || |||| || Sbjct 1310320 ACATTATCAATAGTGTCGGAGCTCTCAACCTCCAGGGTAATTGTTTTCCCTGTTAGGGTC 1310379 Query 172053 TTAATGAATATCTGCATT 172070 || | |||||||||||| Sbjct 1310380 TTCACAAATATCTGCATT 1310397 >seq104 Length=1555027 Score = 98.7 bits (108), Expect = 2e-15 Identities = 160/230 (70%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| ||||| | ||| | || || || | ||| | ||| || |||||||||||| Sbjct 784232 ATACCTCCTCTCAATCGCAGAACCAAGTGGAGAGTCGACTCCTTCTGAATATTATAATCG 784291 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || | ||| | || ||||| || || || ||||| || | ||||| ||||| || Sbjct 784292 GCTAGGGTTCGGCCATCCTCCAACTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCCGGG 784351 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| || ||||| || || || || || || ||||| || || || Sbjct 784352 GGAATTCCCTCCTTATCCTGGATCTTGGCCTTGACGTTGTCAATAGTGTCCGAGCTCTCC 784411 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| |||||||| || || || ||| | | ||| | ||| |||||||| Sbjct 784412 ACTTCCAGAGTAATCGTCTTCCCGGTT-AGGGTTTRACGAAGATCTGCAT 784460 >seq4 Length=23020739 Score = 93.3 bits (102), Expect = 8e-14 Identities = 154/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | ||| || | || | || | |||| |||||| |||||||||||| | Sbjct 9341683 ACCACCACGAAGACGAAGGACAAGGTGGAGGGTAGACTCTTTCTGAATATTATAATCGGC 9341624 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 | | || | || || | ||||| |||||||| || |||||||| ||||| ||||| Sbjct 9341623 AAGGGTACGACCATCCTCGAGCTGTTTCCCAGCAAAGATCAATCTCTGCTGGTCCGGTGG 9341564 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || || || || || || || ||| ||| || || ||||| || || || || Sbjct 9341563 GATACCCTCCTTGTCCTGAATCTTAGCTTTCACGTTRTCAATAGTRTCAGAGCTCTCRAC 9341504 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||| || || || || || | || || | || || ||||| Sbjct 9341503 CTCCAGAGTRATYGTCTTYCCTGTYAGKGTYTTCACAAAWATYTGCAT 9341456 >seq350 Length=1502417 Score = 91.5 bits (100), Expect = 3e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 171835 TCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTAT 171894 ||||| | || ||||| || | || || | || | || | ||| || || |||| Sbjct 383263 TCATAGTTCCTCCTCTCAGCCTCAAAACCAGGTGAAGCGTTGACTCCTTCTGGATGTTAT 383322 Query 171895 AATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGT 171954 |||||| | || ||| | || |||||||||||||| |||||||| ||||||||||| | Sbjct 383323 AATCTGCAAGAGTTCGACCATCTTCCAATTGTTTACCGGCAAAAATCAATCTCTGTTGAT 383382 Query 171955 CAGGTGGTATTCCTTCTTTATCTTG 171979 |||| || || ||||| ||||| || Sbjct 383383 CAGGAGGGATGCCTTCCTTATCCTG 383407 >seq10 Length=33391235 Score = 89.7 bits (98), Expect = 9e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || |||||||| | | || ||| | || |||||||| |||||||||||||| |||||| Sbjct 21109301 ATGTTATAATCCGCAAGAGTTCGGCCATCTTCCAATTGCTTACCAGCAAAAATCAATCTC 21109242 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTG 171979 ||||| ||||| || || ||||||||||| || Sbjct 21109241 TGTTGATCAGGAGGGATGCCTTCTTTATCCTG 21109210 >seq12 Length=31678690 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || |||||||||| | || ||| | || |||||||| ||||| |||||||| |||||| Sbjct 4925795 ATGTTATAATCTGCAAGAGTTCGACCATCTTCCAATTGCTTACCGGCAAAAATCAATCTC 4925854 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTG 171979 ||||| ||||| || || ||||| ||||| || Sbjct 4925855 TGTTGATCAGGAGGGATGCCTTCCTTATCCTG 4925886 >seq111 Length=1131199 Score = 84.2 bits (92), Expect = 4e-11 Identities = 147/228 (64%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | | || | || | || | |||| ||| || ||||| ||||| | Sbjct 722642 ACCACCMCKMARWCGAAGGACMAGGTGGAGRGTAGACTCYTTCTGRATATTRTAATCSGC 722701 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 | | | | || || | || || |||||||| || |||||||| || || ||||| Sbjct 722702 MAGRGTMCKRCCATCYTCSARYTGYTTCCCAGCAAAGATCAATCTCTGCTGRTCCGGTGG 722761 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || || || || || || || ||| ||| || || ||||| || || || || Sbjct 722762 GATACCCTCCTTGTCCTGAATCTTAGCTTTCACGTTRTCAATAGTRTCAGAGCTCTCRAC 722821 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||| || || || || || | || || | || |||||||| Sbjct 722822 CTCCAGAGTRATCGTCTTYCCTGTYAGKGTCTTCACAAAWATCTGCAT 722869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905121845935800