Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq9 235 6e-57 seq672 230 3e-55 seq1241 134 2e-26 seq13 127 2e-24 seq11 116 4e-21 seq629 107 2e-18 seq8 107 2e-18 seq12 104 3e-17 >seq9 Length=33717675 Score = 235 bits (260), Expect = 6e-57 Identities = 440/640 (69%), Gaps = 6/640 (1%) Strand=Plus/Plus Query 159421 GTTGGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAACTTTCTCACAGCAG 159480 ||||||| ||||| | | || ||||||||| | || || ||||||| | | | | Sbjct 26714187 GTTGGTATACCCATAGATTAGCAAGTTCCTATTTGGAAGGCTCTAACTTCTTAAGTGATG 26714246 Query 159481 CTGTCTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCT-ACTTTGGGGTCCTGAG 159539 | || || || || ||| | | | | || | |||| || | ||| ||||||||||| Sbjct 26714247 CAGTTTCCACTCCGGCTAATAGTTTAGCGCACT-TCTTGTTGTTACTATGGGGTCCTGAA 26714305 Query 159540 TCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGATTATGGAATTTTGTGGCACTC 159599 | || || |||| || ||||| ||| | || | ||| || |||||| ||||| Sbjct 26714306 GCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCAGTCTATAGACTTTTGTTGCACTA 26714365 Query 159600 CACGGTGCCTTCGCCCTAATTGGTTTCATGCTCCGTCAGTTTGAACTGGCACG-TCTCAT 159658 || || || |||| ||||| ||||| ||| | ||||| ||||| || || || ||| | Sbjct 26714366 CATGGCGCTTTCGAACTAATAGGTTT-ATGTTACGTCAATTTGAGCTTGCTCGATCTG-T 26714423 Query 159659 TGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGT 159718 || | | |||| ||||| ||||| ||||| ||||| ||||||||||| || || Sbjct 26714424 TGAATTGTGACCTTGTAATGCAATTGCATTCTCCGGTCCAATTGCTGTTTT-GTTTCTGT 26714482 Query 159719 CTTCCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGC 159778 ||||| || || || || |||||||| |||||||| || || || ||||| || || Sbjct 26714483 ATTCCTAATTTATCCGTTAGGTCAGTCTAGTTGGTTCTTTGCACCTAGTTTTGGTGTAGC 26714542 Query 159779 AGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGTTAAATCCCTT 159838 ||| || ||| ||||| | | || | || || ||||| || ||||| |||| || || Sbjct 26714543 AGCTATATTTTGATTCATCCTCTTTTTYCAGGGGTTTCATAATTGGACACTAAACCCATT 26714602 Query 159839 CCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTCAGTGCCATCCATGGCGT 159898 |||||||||||||||| ||| | | || | || | | | || || || || | Sbjct 26714603 TCATATGATGGGAGTTGTTGGGGTGTTGGGCGCTGCTTTGTTATGCGCTATTCACGGTGC 26714662 Query 159899 TACTGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGA 159958 || || | || || | | || |||||| || |||||||| || | || | Sbjct 26714663 TATCATAAAAAATACTTTATTTGGAGATGGTGATGGTGCAAATACATTCCGTGGTTTCAA 26714722 Query 159959 TTCAACTCAAGAGGAGGAGACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGAT 160018 ||||||||| || || ||||| || |||||||| | |||| ||| ||||| || || Sbjct 26714723 CCCAACTCAAGTTGAAGAAACTTATTCAATGGTCACCACTAACCRCTTTTGGTCCCAAAT 26714782 Query 160019 CTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTC 160058 ||| | |||| ||||| || || || ||| | |||||| Sbjct 26714783 CTTTAGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTC 26714822 >seq672 Length=1945142 Score = 230 bits (254), Expect = 3e-55 Identities = 507/757 (67%), Gaps = 37/757 (5%) Strand=Plus/Minus Query 159306 GATGACTGGCTTA--AACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGACTACTACTTC 159363 ||||||||| ||| || || | ||||| |||||||| || |||||| | | | |||| Sbjct 1649946 GATGACTGG-TTACGAAGGA-ACCGCTTCGTTTTTGTAGGTTGGTCTAGCCAATTACTCT 1649889 Query 159364 TTCCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTT 159423 |||| ||| ||| | || | || |||||| | || | ||| | || Sbjct 1649888 TTCCTTGTGCCTATTTYGCTTTAGGGGGTTGGTT----GGAAT--------TTA--ATTT 1649843 Query 159424 GGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAACTTTCTCACAGCAGCTG 159483 |||| ||||| | | || ||||||||| | || || |||||| | | | || | Sbjct 1649842 GGTATACCCATAGATTAGCAAGTTCCTATTTGGAAGGCTTTAACTTCTTAAGTGATGCAG 1649783 Query 159484 TCTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCT-ACTTTGGGGTCCTGAGTCT 159542 | || || || ||| | | | | || | |||| || | ||| ||||||||||| | Sbjct 1649782 TTTCCACTCCGGCTAATAGTTTAGCGCACT-TCTTGTTGTTACTATGGGGTCCTGAAGCA 1649724 Query 159543 CAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGATTATGGAATTTTGTGGCACTCCAC 159602 || || |||| || ||||| ||| | || | ||| || |||||| ||||| || Sbjct 1649723 CAAGGAGATTTTACTCGTTGGTGTCAATTAGGCAGTCTATAGACTTTTGTTGCACTACAT 1649664 Query 159603 GGTGCCTTCGCCCTAATTGGTTTCATGCTCCGTCAGTTTGAACTGGCACG-TCTCATTGG 159661 || || |||| ||||| ||||| ||| | ||||| ||||| || || || ||| || Sbjct 1649663 GGCGCTTTCGGACTAATAGGTTT-ATGTTACGTCAATTTGAGCTTGCTCGATCTG-TTSA 1649606 Query 159662 TATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTT 159721 | | |||| ||||| ||||| ||||| ||||| |||||||||||||| || || Sbjct 1649605 ATTGTGACCTTRTAATGCAATTGCATTCTCCGGTCCAATTGCTGTTTTTGTTTCTGTATT 1649546 Query 159722 CCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGC 159781 ||| || || | || |||||||| ||||||| || || || ||||| || ||||| Sbjct 1649545 CCTAATTTATCYRTTAGGTCAGTCTRGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCAGC 1649486 Query 159782 AATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGTTAAATCCCTTCCA 159841 || ||| ||||| | | || | || || ||||| || ||||| |||| || || || Sbjct 1649485 TATATTTTGATTCATCCTCTTTTTYCAGGGGTTTCATAATTGGACACTAAACCCATTTCA 1649426 Query 159842 TATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTCAGTGCCATCCATGGCGTTAC 159901 |||||||||||||| ||| | | || | || | | | || || || || | || Sbjct 1649425 TATGATGGGAGTTGTTGGGGTGTTGGGCGCTGCTYTGTTATGCGCTATTCACGGTGCTAT 1649366 Query 159902 TGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTC 159961 || | || || | | || |||||| | |||| || |||| | | Sbjct 1649365 CATARAAAATACTTTATTTGGAGATGG-------GGAAATTCC-------GGTTTAACCC 1649320 Query 159962 AACTCAAGAGGAGGAGACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTT 160021 |||||||| || || ||||| || |||||||| | |||| ||| ||||| || ||||| Sbjct 1649319 AACTCAAGTTGAAGAAACTTATTCAATGGTCACCACTAACCRCTTTTGGTCCCAAATCTT 1649260 Query 160022 CGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTC 160058 | |||| ||||| || || || ||| | |||||| Sbjct 1649259 TAGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTC 1649223 >seq1241 Length=4265459 Score = 134 bits (148), Expect = 2e-26 Identities = 247/356 (69%), Gaps = 6/356 (2%) Strand=Plus/Minus Query 157622 GGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGT 157680 || ||||| || || ||||||| | ||| | ||| | ||||| ||||| || || | Sbjct 4250727 GGATGGTTTGGTGTTTTGATGATCCTTACTTTATTGACCGCAACT-TCTGTATTTATTAT 4250669 Query 157681 CGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTC 157740 || ||| | ||||| || || | || || || || || |||||||| || |||| || Sbjct 4250668 TGCTTTCATTGCTGCACCTCCAATAGATATTGATGGTATTCGTGAACCTGTTTCTGGATC 4250609 Query 157741 ACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGG 157800 | | ||||| | ||| || || | | |||| || | || |||| || || || Sbjct 4250608 TTTACTTTATGGAAGCAATATTATTTTTTGTGCCATTATTCCTACTTCTGCAGCTATAGG 4250549 Query 157801 TCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGG 157860 | | ||||| || || || |||||||| | || ||||||| ||| | || || ||||| Sbjct 4250548 TTTGCACTTTTACCCTATATGGGAAGCGACTTCTGTTGATGAATGGTTATACAATGGTGG 4250489 Query 157861 TCCTTTCCAACTCGTAGTATTTCACTTCCTCATTGGTAT--CTATGCATACATGGGACGT 157918 ||||| | || | || | |||||| | ||||| | || ||| ||| |||| ||| Sbjct 4250488 TCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCT-TGC-TACGTGGGTCGT 4250431 Query 157919 GAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTC 157974 |||||||||||| | ||| | ||||| ||||| ||||| ||| |||||||| Sbjct 4250430 GAGTGGGAACTTAGTTTTCGTCTGGGTATACGCCCTTGGATTGTTGTTGCATATTC 4250375 >seq13 Length=34719086 Score = 127 bits (140), Expect = 2e-24 Identities = 247/361 (68%), Gaps = 6/361 (2%) Strand=Plus/Plus Query 157622 GGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGT 157680 || ||||| || || ||||||| | ||| | ||| | ||||| ||||| || || | Sbjct 21513248 GGATGGTTTGGTGTTTTGATGATCCTTACTTTATTGACCGCAACT-TCTGTATTTATTAT 21513306 Query 157681 CGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTC 157740 || ||| | |||| || || | || || || || || |||||||| || |||| || Sbjct 21513307 TGCTTTCATTRCTGCACCTCCAATAGATATTGATGGTATTCGTGAACCTGTTTCTGGATC 21513366 Query 157741 ACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGG 157800 | | ||||| | ||| || || | | |||| || | || |||| || || || Sbjct 21513367 TTTACTTTATGGAAGCAATATTATTTTTTGTGCCATTATTCCTACTTCTGCAGCTATAGG 21513426 Query 157801 TCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGG 157860 | | ||||| || || || |||||||| | || ||||||| ||| | || || ||||| Sbjct 21513427 TTTGCACTTTTACCCTATATGGGAAGCGACTTCTGTTGATGAATGGTTATACAATGGTGG 21513486 Query 157861 TCCTTTCCAACTCGTAGTATTTCACTTCCTCATTGGTAT--CTATGCATACATGGGACGT 157918 ||||| | || | || | |||||| | ||||| | || ||| ||| |||| ||| Sbjct 21513487 TCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCT-TGC-TACGTGGGTCGT 21513544 Query 157919 GAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCT 157978 |||||||||||| | | | ||||| ||||| ||||| ||| |||||||| || Sbjct 21513545 GAGTGGGAACTTAGTTTTYKTCTGGGTATACGCCCTTGGATTGTTGTTGCATATTCARCT 21513604 Query 157979 C 157979 | Sbjct 21513605 C 21513605 >seq11 Length=35299535 Score = 116 bits (128), Expect = 4e-21 Identities = 207/302 (69%), Gaps = 0/302 (0%) Strand=Plus/Minus Query 160010 GTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTCATGTTGTT 160069 ||| || ||||| || |||| |||| || || | ||| | |||||| | ||||| || Sbjct 68910 GTCCCACATCTTTGGGGTTGCTGTTTCCAATAAACATTGGTTACATTTCCTTATGTTATT 68851 Query 160070 TGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTTAATCT 160129 ||| | || | ||| | |||| || ||| | | || || || | || || Sbjct 68850 TGTACTAGTAACCGGTTTATGGATGAGTGCTCTTGAAGTAGTGGGTCTGGCCTTGAACCT 68791 Query 160130 TCGTGCTTACGATTTCGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGAC 160189 |||| || ||||| || ||| | ||| | || ||||||||| ||||||||||| Sbjct 68790 ACGTGTCTATGATTTTGTTTCTCAGAAAATCCATGTAGTAGAAGATCCTGAATTTGAGAC 68731 Query 160190 CTTCTACACCAAAAACATCCTATTGAACGAAGGACTACGTGCATGGTTGGCACCTGCTGA 160249 ||||| ||||| || || || || || ||||| ||| ||| ||| ||| || || Sbjct 68730 TTTCTAAACCAACAATATTCTCTTAAATGAAGGTATACATGCTTGGATGGTGGCTCAAGA 68671 Query 160250 TCAACCCCATGAAAACTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTA 160309 ||| || |||||||| |||| ||||| || || || || || | || ||||| ||||| Sbjct 68670 TCAGCCTTATGAAAACCTTATATTCCCTGAGGAGGTTTTACCCCGTGGAAACGCTCTTTA 68611 Query 160310 AT 160311 || Sbjct 68610 AT 68609 >seq629 Length=2291386 Score = 107 bits (118), Expect = 2e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 158231 AACTACGGTTACAAGTTCGGTCAAGAGGAAGAGACCTATAACATCGTCGCAGCACATGGC 158290 || |||||||||| || |||||||||||||| ||||| || ||||| || || ||||| Sbjct 2030033 AATTACGGTTACAGATTTGGTCAAGAGGAAGAAACCTACAATATCGTAGCGGCTCATGGT 2029974 Query 158291 TACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTC 158350 || || || | |||||||||||||| ||| || |||||||| | ||| || |||||| Sbjct 2029973 TATTTTGGCTGATTGATCTTCCAATATGCTAGTTTGAACAACTCTCATTCTTTACACTTC 2029914 Query 158351 TT 158352 || Sbjct 2029913 TT 2029912 >seq8 Length=29603939 Score = 107 bits (118), Expect = 2e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 158231 AACTACGGTTACAAGTTCGGTCAAGAGGAAGAGACCTATAACATCGTCGCAGCACATGGC 158290 || |||||||||| || |||||||||||||| ||||| || ||||| || || ||||| Sbjct 4091918 AATTACGGTTACAGATTTGGTCAAGAGGAAGAAACCTACAATATCGTAGCGGCTCATGGT 4091977 Query 158291 TACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTC 158350 || || || | |||||||||||||| ||| || |||||||| | ||| || |||||| Sbjct 4091978 TATTTTGGCTGATTGATCTTCCAATATGCTAGTTTGAACAACTCTCATTCTTTACACTTC 4092037 Query 158351 TT 158352 || Sbjct 4092038 TT 4092039 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 158741 GAGGATCAATACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTACTCTTGT 158800 ||||| ||||||||| ||||| || || || |||||| |||| | ||||| || Sbjct 28502934 GAGGACGTATACATTCTCGACGCGGCGGAGGAGGCAGGAATTGACCTGCCCTACTCCTGC 28502993 Query 158801 CGTGCTGGTGCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAGT 158860 | || || ||||||| || || || || || |||| ||| | ||| |||||| Sbjct 28502994 AGGGCAGGGTCTTGCTCCTCGTGCGCCGGCAAGGTTGTGAGTGGGAGTGTGGATCAGTCG 28503053 Query 158861 GATCAGTCGTTCTTAGACGATGATCAGATTGCAGCAGGATTTGTTCTTACGTGTGTAGCA 158920 || ||| || | || ||||||||||||| | |||||||| || || || || || Sbjct 28503054 GACCAGAGCTTTCTGGATGATGATCAGATTGGCGGTGGATTTGTGCTCACCTGCGTGGCG 28503113 Query 158921 TATCCAACATCTGA 158934 ||||| | ||||| Sbjct 28503114 TATCCGGCGTCTGA 28503127 >seq12 Length=31678690 Score = 104 bits (114), Expect = 3e-17 Identities = 101/129 (78%), Gaps = 1/129 (1%) Strand=Plus/Minus Query 160164 GCAGCAGAAGATCCAGAATTT-GAGACCTTCTACACCAAAAACATCCTATTGAACGAAGG 160222 ||| | |||||||| |||||| ||||| |||||||||||||| || || || | ||||| Sbjct 15529651 GCAACGGAAGATCCTGAATTTTGAGACTTTCTACACCAAAAATATTCTCTTAAGTGAAGG 15529592 Query 160223 ACTACGTGCATGGTTGGCACCTGCTGATCAACCCCATGAAAACTTTATCTTCCCAGAAGA 160282 | | ||| ||| ||||| || |||||||| ||||||||| |||| ||||| ||||| Sbjct 15529591 TATTCATGCTTGGATGGCARCTTAAGATCAACCTCATGAAAACCTTATATTCCCTGAAGA 15529532 Query 160283 AGTATTGCC 160291 || || || Sbjct 15529531 GGTTTTACC 15529523 Score = 100 bits (110), Expect = 3e-16 Identities = 95/120 (79%), Gaps = 1/120 (1%) Strand=Plus/Minus Query 160164 GCAGCAGAAGATCCAGAATTT-GAGACCTTCTACACCAAAAACATCCTATTGAACGAAGG 160222 ||| | |||||||| |||||| ||||| |||||||||||||| || || || | ||||| Sbjct 15589922 GCAACGGAAGATCCTGAATTTTGAGACTTTCTACACCAAAAATATTCTCTTAAGTGAAGG 15589863 Query 160223 ACTACGTGCATGGTTGGCACCTGCTGATCAACCCCATGAAAACTTTATCTTCCCAGAAGA 160282 | | ||| ||| ||||| || |||||||| ||||||||| |||| ||||| ||||| Sbjct 15589862 TATTCATGCTTGGATGGCARCTTAAGATCAACCTCATGAAAACCTTATATTCCCTGAAGA 15589803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548365824795320