Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq672 152 6e-32 seq9 143 3e-29 seq1241 138 1e-27 seq13 132 6e-26 seq629 95.1 1e-14 seq11 95.1 1e-14 seq8 95.1 1e-14 >seq672 Length=1945142 Score = 152 bits (168), Expect = 6e-32 Identities = 368/560 (66%), Gaps = 15/560 (3%) Strand=Plus/Minus Query 73364 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 73423 ||||| || | ||||| |||||| || | || ||||| || | || |||||| | Sbjct 1649958 TTTGATATTATGGATGACTGGTTACGAAGGAACCGCTTCGTTTTTGTAGGTTGGTCTAGC 1649899 Query 73424 CTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTC 73483 | ||||| || |||||||| || | || | || |||||||| |||| | || Sbjct 1649898 CAATTACTCTTTCCTTGTGCCTATTTYGCTTTAGGGGGTTGGTT----GGAATTTAATT- 1649844 Query 73484 GTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAATTTTTTA 73543 ||||| || ||| | | ||| || ||| | || || || || ||| Sbjct 1649843 ---------TGGTATACCCATAGATTAGCAAGTTCCTATTTGGAAGGCTTTAACTTCTTA 1649793 Query 73544 ACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTTTGGGGA 73603 | || ||||| || || || | | || | | | || | ||||| || ||||| Sbjct 1649792 AGTGATGCAGTTTCCACTCCGGCTAATAGTTTAGCGCACTTCTTGTTGTTACTATGGGGT 1649733 Query 73604 CCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTA 73663 || || |||||||||||| || || |||| ||||||||| | |||| || ||||| Sbjct 1649732 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCAGTCTATAGACTTTTGTT 1649673 Query 73664 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCAGGA 73723 ||| ||||||| | || ||||| |||||||| ||| | | || |||||| |||| || Sbjct 1649672 GCACTACATGGCGCTTTCGGACTAATAGGTTT-ATGTTACGTCAATTTGAGCTTGCTCGA 1649614 Query 73724 CTTGTTGGGATACGTCCTTACAACGCATTAGCTTTTTCAGCAGTTATCGCAGTATTCACG 73783 |||| | | |||| || ||| | || || || | || || || || Sbjct 1649613 TCTGTTSAATTGTGACCTTRTAATGCAATTGCATTCTCCGGTCCAATTGCTGTTTTTGTT 1649554 Query 73784 AGCATCTTTCTAATATATCCTTTAGGACAGCATAGTTGGTTCTTCGCACCTTCATTCGGT 73843 | || ||||| |||| ||||| ||| | |||||||||| |||||| || ||| Sbjct 1649553 TCTGTATTCCTAATTTATCYRTTAGGTCAGTCTRGTTGGTTCTTTGCACCTAGTTTTGGT 1649494 Query 73844 GTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAAT 73903 || ||||| || ||| | | || | || | ||||| || || ||| || || || Sbjct 1649493 GTAGCAGCTATATTTTGATTCATCCTCTTTTTYCAGGGGTTTCATAATTGGACACTAAAC 1649434 Query 73904 CCATTTCATATGATGGGTGT 73923 ||||||||||||||||| || Sbjct 1649433 CCATTTCATATGATGGGAGT 1649414 >seq9 Length=33717675 Score = 143 bits (158), Expect = 3e-29 Identities = 236/339 (70%), Gaps = 10/339 (3%) Strand=Plus/Plus Query 73589 TTGTTCCTTTGGGGACCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGA 73648 ||||| || ||||| || || |||||||||||| || || |||| ||||||||| | Sbjct 26714285 TTGTTACTATGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCAGT 26714344 Query 73649 CTATGGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAG 73708 |||| || ||||| ||| ||||||| | || | ||| |||||||| ||| | | || Sbjct 26714345 CTATAGACTTTTGTTGCACTACATGGCGCTTTCGAACTAATAGGTTT-ATGTTACGTCAA 26714403 Query 73709 TTTGAGATTGCAGGACTTGTTGGGATACGTCCTTACAACGCATTAGCTTTTTCAGCAGTT 73768 |||||| |||| || ||||| | | |||| || ||| | || || || | Sbjct 26714404 TTTGAGCTTGCTCGATCTGTTGAATTGTGACCTTGTAATGCAATTGCATTCTCCGGTCCA 26714463 Query 73769 ATCGCAGTATTCACGAGCATC----TTTCTAATATATCCTTTAGGACAGCATAGTTGGTT 73824 || || || || | || || ||||| ||||| ||||| ||| ||||||||| Sbjct 26714464 ATTGCTGTTTT-----GTTTCTGTATTCCTAATTTATCCGTTAGGTCAGTCTAGTTGGTT 26714518 Query 73825 CTTCGCACCTTCATTCGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTT 73884 ||| |||||| || ||||| ||||| || ||| | | || | || | ||||| || Sbjct 26714519 CTTTGCACCTAGTTTTGGTGTAGCAGCTATATTTTGATTCATCCTCTTTTTYCAGGGGTT 26714578 Query 73885 CCACAATATAACTCTTAATCCATTTCATATGATGGGTGT 73923 || ||| || || || ||||||||||||||||| || Sbjct 26714579 TCATAATTGGACACTAAACCCATTTCATATGATGGGAGT 26714617 >seq1241 Length=4265459 Score = 138 bits (152), Expect = 1e-27 Identities = 256/376 (68%), Gaps = 0/376 (0%) Strand=Plus/Minus Query 72255 CACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCATGTCTTCTAAC 72314 || ||| |||| | ||| |||| ||||||||||| || ||||||| | | | || Sbjct 4250749 CATTGAAAATCATCTTTACATTGGATGGTTTGGTGTTTTGATGATCCTTACTTTATTGAC 4250690 Query 72315 TGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGATATCGACGGAAT 72374 || || || || ||| | || ||||| ||||| |||||| | ||||| || || || Sbjct 4250689 CGCAACTTCTGTATTTATTATTGCTTTCATTGCTGCACCTCCAATAGATATTGATGGTAT 4250630 Query 72375 CAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGT 72434 | ||||| ||| | || ||||| | ||||| | ||| || || | | |||| | | Sbjct 4250629 TCGTGAACCTGTTTCTGGATCTTTACTTTATGGAAGCAATATTATTTTTTGTGCCATTAT 4250570 Query 72435 TCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGGA 72494 ||| |||| || ||||| || ||||| || || || |||||||| | || | || Sbjct 4250569 TCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCTATATGGGAAGCGACTTCTGTTGA 4250510 Query 72495 CGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGGAAT 72554 || ||||| || || || |||||||| || || || || | |||||| | |||| | Sbjct 4250509 TGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT 4250450 Query 72555 CTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGAT 72614 || |||| ||||| | |||||||||| | | || || || | |||||||| Sbjct 4250449 AGCTTGCTACGTGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATACGCCCTTGGAT 4250390 Query 72615 ATGTGTAGCATACTCA 72630 ||| ||||| ||| Sbjct 4250389 TGTTGTTGCATATTCA 4250374 >seq13 Length=34719086 Score = 132 bits (146), Expect = 6e-26 Identities = 227/330 (69%), Gaps = 0/330 (0%) Strand=Plus/Plus Query 72255 CACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCATGTCTTCTAAC 72314 || ||| |||| | ||| |||| ||||||||||| || ||||||| | | | || Sbjct 21513226 CATTGAAAATCATCTTTACATTGGATGGTTTGGTGTTTTGATGATCCTTACTTTATTGAC 21513285 Query 72315 TGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGATATCGACGGAAT 72374 || || || || ||| | || ||||| |||| |||||| | ||||| || || || Sbjct 21513286 CGCAACTTCTGTATTTATTATTGCTTTCATTRCTGCACCTCCAATAGATATTGATGGTAT 21513345 Query 72375 CAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGT 72434 | ||||| ||| | || ||||| | ||||| | ||| || || | | |||| | | Sbjct 21513346 TCGTGAACCTGTTTCTGGATCTTTACTTTATGGAAGCAATATTATTTTTTGTGCCATTAT 21513405 Query 72435 TCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGGA 72494 ||| |||| || ||||| || ||||| || || || |||||||| | || | || Sbjct 21513406 TCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCTATATGGGAAGCGACTTCTGTTGA 21513465 Query 72495 CGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGGAAT 72554 || ||||| || || || |||||||| || || || || | |||||| | |||| | Sbjct 21513466 TGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT 21513525 Query 72555 CTCTGCCTACATGGGTAGACAGTGGGAACT 72584 || |||| ||||| | |||||||||| Sbjct 21513526 AGCTTGCTACGTGGGTCGTGAGTGGGAACT 21513555 >seq629 Length=2291386 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 72886 AACTACGGCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGA 72945 || ||||| || | || || ||||| |||||||| || || || || || |||||||| Sbjct 2030033 AATTACGGTTACAGATTTGGTCAAGAGGAAGAAACCTACAATATCGTAGCGGCTCATGGT 2029974 Query 72946 TACTTCGGTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTC 73005 || || || |||| |||||||| ||||| || |||||||||| ||| ||||||||| Sbjct 2029973 TATTTTGGCTGATTGATCTTCCAATATGCTAGTTTGAACAACTCTCATTCTTTACACTTC 2029914 Query 73006 TT 73007 || Sbjct 2029913 TT 2029912 >seq11 Length=35299535 Score = 95.1 bits (104), Expect = 1e-14 Identities = 204/303 (67%), Gaps = 4/303 (1%) Strand=Plus/Minus Query 74101 GTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTTACACTTCCTTATGTTGTT 74160 ||| || || ||||| | || |||| || ||| | ||||| ||||||||||| || Sbjct 68910 GTCCCACATCTTTGGGGTTGCTGTTTCCAATAAACATTGGTTACATTTCCTTATGTTATT 68851 Query 74161 CGTACCTGTCATGGGTATGTGGACA--TCATCTATAGGTATCGTAGGTCTAGCACTTAAC 74218 |||| || | ||| | |||| | ||| | ||| || ||||| || | ||| Sbjct 68850 TGTACTAGTAACCGGTTTATGGATGAGTGCTCTTGAAGTA--GTGGGTCTGGCCTTGAAC 68793 Query 74219 CTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAGAGTTTGAA 74278 || | | || || ||||| ||||| | || | || |||||| || || ||||| Sbjct 68792 CTACGTGTCTATGATTTTGTTTCTCAGAAAATCCATGTAGTAGAAGATCCTGAATTTGAG 68733 Query 74279 ACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCATGGATGTCATCTGTC 74338 || ||||| || || || ||||| | ||||||||||| || |||||| || Sbjct 68732 ACTTTCTAAACCAACAATATTCTCTTAAATGAAGGTATACATGCTTGGATGGTGGCTCAA 68673 Query 74339 GATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCCACGAGGCAACGCACTA 74398 ||||| || |||| ||| || | ||||| || || || || || || || ||||| || Sbjct 68672 GATCAGCCTTATGAAAACCTTATATTCCCTGAGGAGGTTTTACCCCGTGGAAACGCTCTT 68613 Query 74399 TAA 74401 ||| Sbjct 68612 TAA 68610 >seq8 Length=29603939 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 72886 AACTACGGCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGA 72945 || ||||| || | || || ||||| |||||||| || || || || || |||||||| Sbjct 4091918 AATTACGGTTACAGATTTGGTCAAGAGGAAGAAACCTACAATATCGTAGCGGCTCATGGT 4091977 Query 72946 TACTTCGGTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTC 73005 || || || |||| |||||||| ||||| || |||||||||| ||| ||||||||| Sbjct 4091978 TATTTTGGCTGATTGATCTTCCAATATGCTAGTTTGAACAACTCTCATTCTTTACACTTC 4092037 Query 73006 TT 73007 || Sbjct 4092038 TT 4092039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572864641689080