Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq317 98.7 8e-16 seq104 98.7 8e-16 seq111 96.9 3e-15 seq296 86.0 5e-12 seq5 86.0 5e-12 seq10 84.2 2e-11 seq699 82.4 6e-11 >seq317 Length=1923123 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| |||||||||||||| |||| || || || || || |||| ||| ||| Sbjct 1310852 ATGCAGATTTTTGTCAAAACCCTAACGGGGAAGACAATMACTCTCGAGGTCGAGAGCTCT 1310793 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| ||| | || || ||||| ||||| || || | || || || Sbjct 1310792 -GATACCATCGATAATGTGAAGGCCAAGATCCAGGATAAGGAGGGAATCCCACCAGACCA 1310734 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||||| | |||| || ||||| || ||||||||| | || ||||||| ||||| Sbjct 1310733 GCAGAGATTGATTTTCGCTGGTAAGCAATTGGAGGACGGAAGGACTTTGGCGGATTACAA 1310674 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||| |||||||||||||| |||||| |||| || | || |||| || Sbjct 1310673 CATCCAAAAGGAGTCTACTTTGCACTTGGTCCTGCGTCTGAGAGGTGG 1310626 >seq104 Length=1555027 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| |||||||||||||| |||| || || || || || |||| ||| ||| Sbjct 784233 ATGCAGATTTTTGTCAAAACCCTAACGGGGAAGACAATAACTCTCGAGGTCGAGAGCTCT 784174 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| ||| | || || ||||| ||||| || || | || || || Sbjct 784173 -GATACCATCGATAATGTGAAGGCCAAGATCCAGGATAAGGAGGGAATCCCACCAGACCA 784115 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||||| | |||| || ||||| || ||||||||| | || ||||||| ||||| Sbjct 784114 GCAGAGATTGATTTTCGCTGGTAAGCAATTGGAGGACGGAAGGACTTTGGCGGATTACAA 784055 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||| |||||||||||||| |||||| |||| || | || |||| || Sbjct 784054 CATCCAAAAGGAGTCTACTTTGCACTTGGTCCTGCGTCTGAGAGGTGG 784007 >seq111 Length=1131199 Score = 96.9 bits (106), Expect = 3e-15 Identities = 157/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||| || || || ||||||| || || |||||| | || ||| | | Sbjct 723325 ATGCAAATTTTCGTGAAGACCCTAACAGGGAAGACAATTACCCTGGAGGTCGAGAGTTCC 723266 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | || ||| ||| ||| || || || || | || |||||| Sbjct 723265 GATACGATTGAYAACGTGAAAGCAAAAATTCAAGACAAGGAGGGTATTCCTCCAGATCAG 723206 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 |||||| | || | ||| ||||| || |||| || | || || ||||||| |||||| Sbjct 723205 CAGAGATTGATCTTTGCCGGTAAGCAATTGGAAGATGGCAGGACTCTGGCGGATTACAAC 723146 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGG 107781 || ||||||||||| || ||||| |||| | |||| |||||| Sbjct 723145 ATCCAAAAGGAGTCAACTTTGCATTTGGTCCTTCGATT--GAGGGG 723102 >seq296 Length=1448965 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 107631 GTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTAT 107690 || ||| |||||| || || || ||| | || ||| ||||||||||| || | | Sbjct 596925 GTGAAAGCAAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAGCAGAGACTCATCTTT 596866 Query 107691 GCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCT 107750 || ||||| ||||||||||||| | || | ||||| |||||||| |||||||||||| Sbjct 596865 GCCGGTAAGCAGCTGGAGGACGGAAGGACTCTTGCGGATTACAACATCCAAAAGGAGTCT 596806 Query 107751 AC 107752 || Sbjct 596805 AC 596804 >seq5 Length=31606955 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| ||||| ||||| | || || || ||||| ||| | || |||| || Sbjct 1683744 ATGCAAATCTTTGTGAAAACCCTCACCGGAAAGACCATCACCCTTGAGGTGGAGTCTTCT 1683803 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||| || || ||||| | ||| || ||| Sbjct 1683804 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATCCCCCCAGACCAG 1683863 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | ||||| | || || || ||||| || |||| | ||| | || ||||||||| Sbjct 1683864 CAGCGTCTTATCTTCGCCGGAAAGCAGCTCGAAGACGGCCGAACCCTCGCAGACTACAAC 1683923 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || ||||||||||| || | ||| ||||| Sbjct 1683924 ATCCAAAAGGAGTCAACCCTCCACTTGGTG 1683953 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| || ||||| || | ||||| || ||||| ||| | || |||| ||| Sbjct 1684428 ATGCAAATCTTCGTCAAGACCCTTACAGGGAAGACCATCACCCTTGAGGTGGAGAGCTC- 1684486 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || | | | | || || |||||| ||||| || ||| | || ||| || Sbjct 1684487 CGACACCATAGACAACGTGAAGGCCAAGATTCAAGATAAGGAGGGCATCCCACCGGACCA 1684546 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||| | ||| || || ||||| ||||||| | || | || |||||||| Sbjct 1684547 GCAGAGGCTTATCTTTGCAGGAAAGCAGCTCGAGGACGGCCGCACCCTTGCCGACTACAA 1684606 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||| || || ||||| || | || ||||| Sbjct 1684607 CATCCAGAAAGAGTCCACTCTCCATTTGGTG 1684637 >seq10 Length=33391235 Score = 84.2 bits (92), Expect = 2e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 107649 GATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAG 107708 |||||||||||| | || ||||| |||||| | |||| ||| ||||| || |||| Sbjct 21109213 GATAAAGAAGGCATCCCTCCTGATCAACAGAGATTGATTTTTGCTGGTAAGCAATTGGAA 21109272 Query 107709 GACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || | | ||| | ||||| || ||||| ||||||||||| || | ||| |||| ||| Sbjct 21109273 GATGGCCGAACTCTTGCGGATTATAACATCCAAAAGGAGTCAACACTTCACCTGGTTTTG 21109332 Query 107769 AGATTGCGAGGGGGAAATA 107787 || || | || |||| || Sbjct 21109333 AGGCTGAGGGGAGGAACTA 21109351 >seq699 Length=1873381 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || || || | || ||||| ||||| ||| | || |||| | | Sbjct 139843 ATGCAGATCTTCGTTAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTGGAGTCATCC 139902 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | | || || || || || || |||||| | ||| || ||| Sbjct 139903 GATACCATTGACAATGTCAAGGCCAAAATCCAAGACAAGGAAGGCATTCCCCCAGACCAG 139962 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| | || | ||| ||||| ||||||||||||| || || | || ||||||||| Sbjct 139963 CAGAGGTTGATCTTTGCCGGTAAGCAGCTGGAGGACGGCAGGACCCTAGCTGACTACAAC 140022 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || | || ||||| Sbjct 140023 ATCCAGAAGGAGTCAACCCTCCATTTGGTG 140052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398870718499939