Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq9 248 9e-61 seq672 241 1e-58 seq1241 167 3e-36 seq13 158 1e-33 seq12 104 3e-17 >seq9 Length=33717675 Score = 248 bits (274), Expect = 9e-61 Identities = 442/638 (69%), Gaps = 6/638 (1%) Strand=Plus/Plus Query 158904 TGGTATACACATGGACTCGCTACTTCCTATCTTGAGGGTGCAAACTTTCTTACAGCAGCA 158963 |||||||| ||| || | || | ||||||| | || || | ||||| | | | ||| Sbjct 26714189 TGGTATACCCATAGATTAGCAAGTTCCTATTTGGAAGGCTCTAACTTCTTAAGTGATGCA 26714248 Query 158964 GTTTCGACTCCAGCTGATGCTATGGGTCATTCTCTTCTGCTT-CTCTGGGGTCCTGAGGC 159022 ||||| ||||| ||| || | | | || | |||| | || || ||||||||||| || Sbjct 26714249 GTTTCCACTCCGGCTAATAGTTTAGCGCACT-TCTTGTTGTTACTATGGGGTCCTGAAGC 26714307 Query 159023 TCAAGGGGATTTCGTCAGGTGGGTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCA 159082 ||||| ||||| | ||| ||| | || | || | || |||||| || || || Sbjct 26714308 ACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCAGTCTATAGACTTTTGTTGCACTACA 26714367 Query 159083 CGGTGCCTTTGCCCTAATTGGTTTCATGCTTCGCCAGTTTGAACTGGCACG-TCTCATCG 159141 || || || | ||||| ||||| ||| | || || ||||| || || || ||| | Sbjct 26714368 TGGCGCTTTCGAACTAATAGGTTT-ATGTTACGTCAATTTGAGCTTGCTCGATCTGTTGA 26714426 Query 159142 GTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCT 159201 | | | || | ||||| ||||| ||||| ||||| ||||||||||| || || | Sbjct 26714427 AT-TGTGACCTTGTAATGCAATTGCATTCTCCGGTCCAATTGCTGTTTT-GTTTCTGTAT 26714484 Query 159202 TCCTTATCTACCCACTTGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCCG 159261 |||| || || || | |||||||| |||||||| || || || ||||| || || | Sbjct 26714485 TCCTAATTTATCCGTTAGGTCAGTCTAGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCAG 26714544 Query 159262 CAATATTCAGGTTCCTACTCTTCCTACAAGGGTTCCACAATTGGACACTAAACCCCTTCC 159321 | ||||| | ||| | ||||| | || ||||| || ||||||||||||||||| || | Sbjct 26714545 CTATATTTTGATTCATCCTCTTTTTYCAGGGGTTTCATAATTGGACACTAAACCCATTTC 26714604 Query 159322 ATATGATGGGAGTTGCTGGTATCCTAGGTGGAGCACTTCTATCTGCTATTCATGGGGTCA 159381 ||||||||||||||| ||| | | || | || | ||| |||||||| || | | Sbjct 26714605 ATATGATGGGAGTTGTTGGGGTGTTGGGCGCTGCTTTGTTATGCGCTATTCACGGTGCTA 26714664 Query 159382 CAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATT 159441 | ||||||| |||| | ||||| || ||||| || || | || | Sbjct 26714665 TCATAAAAAATACTTTATTTGGAGATGGTGATGGTGCAAATACATTCCGTGGTTTCAACC 26714724 Query 159442 CAACTCAAGAGGAGGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCT 159501 ||||||||| || || |||||||| |||||||| | |||| ||| ||||| || |||| Sbjct 26714725 CAACTCAAGTTGAAGAAACTTATTCAATGGTCACCACTAACCRCTTTTGGTCCCAAATCT 26714784 Query 159502 TCGGCATTGCGTTTTCTAACAAGCGGTGGCTTCATTTC 159539 | | |||| ||||| || || || ||| | |||||| Sbjct 26714785 TTAGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTC 26714822 >seq672 Length=1945142 Score = 241 bits (266), Expect = 1e-58 Identities = 436/638 (68%), Gaps = 19/638 (3%) Strand=Plus/Minus Query 158904 TGGTATACACATGGACTCGCTACTTCCTATCTTGAGGGTGCAAACTTTCTTACAGCAGCA 158963 |||||||| ||| || | || | ||||||| | || || ||||| | | | ||| Sbjct 1649843 TGGTATACCCATAGATTAGCAAGTTCCTATTTGGAAGGCTTTAACTTCTTAAGTGATGCA 1649784 Query 158964 GTTTCGACTCCAGCTGATGCTATGGGTCATTCTCTTCTGCTT-CTCTGGGGTCCTGAGGC 159022 ||||| ||||| ||| || | | | || | |||| | || || ||||||||||| || Sbjct 1649783 GTTTCCACTCCGGCTAATAGTTTAGCGCACT-TCTTGTTGTTACTATGGGGTCCTGAAGC 1649725 Query 159023 TCAAGGGGATTTCGTCAGGTGGGTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCA 159082 ||||| ||||| | ||| ||| | || | || | || |||||| || || || Sbjct 1649724 ACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCAGTCTATAGACTTTTGTTGCACTACA 1649665 Query 159083 CGGTGCCTTTGCCCTAATTGGTTTCATGCTTCGCCAGTTTGAACTGGCACG-TCTCATCG 159141 || || || | ||||| ||||| ||| | || || ||||| || || || ||| | Sbjct 1649664 TGGCGCTTTCGGACTAATAGGTTT-ATGTTACGTCAATTTGAGCTTGCTCGATCTGTTSA 1649606 Query 159142 GTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCT 159201 | | | || | ||||| ||||| ||||| ||||| |||||||||||||| || | Sbjct 1649605 AT-TGTGACCTTRTAATGCAATTGCATTCTCCGGTCCAATTGCTGTTTTTGTTTCTGTAT 1649547 Query 159202 TCCTTATCTACCCACTTGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCCG 159261 |||| || || | | |||||||| ||||||| || || || ||||| || || | Sbjct 1649546 TCCTAATTTATCYRTTAGGTCAGTCTRGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCAG 1649487 Query 159262 CAATATTCAGGTTCCTACTCTTCCTACAAGGGTTCCACAATTGGACACTAAACCCCTTCC 159321 | ||||| | ||| | ||||| | || ||||| || ||||||||||||||||| || | Sbjct 1649486 CTATATTTTGATTCATCCTCTTTTTYCAGGGGTTTCATAATTGGACACTAAACCCATTTC 1649427 Query 159322 ATATGATGGGAGTTGCTGGTATCCTAGGTGGAGCACTTCTATCTGCTATTCATGGGGTCA 159381 ||||||||||||||| ||| | | || | || | ||| |||||||| || | | Sbjct 1649426 ATATGATGGGAGTTGTTGGGGTGTTGGGCGCTGCTYTGTTATGCGCTATTCACGGTGCTA 1649367 Query 159382 CAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATT 159441 | ||||||| |||| | ||||| | ||| || |||| | Sbjct 1649366 TCATARAAAATACTTTATTTGGAGATGG-------GGAAATTCC-------GGTTTAACC 1649321 Query 159442 CAACTCAAGAGGAGGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCT 159501 ||||||||| || || |||||||| |||||||| | |||| ||| ||||| || |||| Sbjct 1649320 CAACTCAAGTTGAAGAAACTTATTCAATGGTCACCACTAACCRCTTTTGGTCCCAAATCT 1649261 Query 159502 TCGGCATTGCGTTTTCTAACAAGCGGTGGCTTCATTTC 159539 | | |||| ||||| || || || ||| | |||||| Sbjct 1649260 TTAGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTC 1649223 >seq1241 Length=4265459 Score = 167 bits (184), Expect = 3e-36 Identities = 252/356 (71%), Gaps = 2/356 (1%) Strand=Plus/Minus Query 157091 TTGGTTGGTTCGGTGTGCTTATGATTCCAACATTGCTTGCAGCAACTATCTGC-TTCATT 157149 |||| ||||| ||||| | ||||| | || || | | |||||| |||| || ||| Sbjct 4250729 TTGGATGGTTTGGTGTTTTGATGATCCTTACTTTATTGACCGCAACT-TCTGTATTTATT 4250671 Query 157150 GTTGCATTCGTAGCAGCACCTCCCGTTGATATCGACGGTATTCGCGAACCAGTTGCTGGT 157209 |||| ||| | || |||||||| | ||||| || |||||||| ||||| ||| |||| Sbjct 4250670 ATTGCTTTCATTGCTGCACCTCCAATAGATATTGATGGTATTCGTGAACCTGTTTCTGGA 4250611 Query 157210 TCTCTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCAAACGCAATC 157269 ||| | | ||||| | ||| || || | | |||| || ||||| |||| || || Sbjct 4250610 TCTTTACTTTATGGAAGCAATATTATTTTTTGTGCCATTATTCCTACTTCTGCAGCTATA 4250551 Query 157270 GGTCTTCACTTCTACCCCATCTGGGAAGCAGCATCACTTGATGAGTGGCTTTACAACGGT 157329 ||| | ||||| ||||| || |||||||| | || ||||||| ||| | ||||| ||| Sbjct 4250550 GGTTTGCACTTTTACCCTATATGGGAAGCGACTTCTGTTGATGAATGGTTATACAATGGT 4250491 Query 157330 GGTCCTTTCCAACTGGTAGTCTTTCACTTCCTGATCGGCATCTATGCCTATATGGGACGT 157389 ||||||| | || | || | |||||| | | || | | ||| |||| ||| Sbjct 4250490 GGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACGTGGGTCGT 4250431 Query 157390 GAGTGGGAACTTTCTTACCGTTTAGGTATGCGCCCCTGGATCTGTGTTGCCTACTC 157445 |||||||||||| || ||| | ||||| ||||| ||||| |||||| || || Sbjct 4250430 GAGTGGGAACTTAGTTTTCGTCTGGGTATACGCCCTTGGATTGTTGTTGCATATTC 4250375 >seq13 Length=34719086 Score = 158 bits (174), Expect = 1e-33 Identities = 249/356 (70%), Gaps = 2/356 (1%) Strand=Plus/Plus Query 157091 TTGGTTGGTTCGGTGTGCTTATGATTCCAACATTGCTTGCAGCAACTATCTGC-TTCATT 157149 |||| ||||| ||||| | ||||| | || || | | |||||| |||| || ||| Sbjct 21513246 TTGGATGGTTTGGTGTTTTGATGATCCTTACTTTATTGACCGCAACT-TCTGTATTTATT 21513304 Query 157150 GTTGCATTCGTAGCAGCACCTCCCGTTGATATCGACGGTATTCGCGAACCAGTTGCTGGT 157209 |||| ||| | | |||||||| | ||||| || |||||||| ||||| ||| |||| Sbjct 21513305 ATTGCTTTCATTRCTGCACCTCCAATAGATATTGATGGTATTCGTGAACCTGTTTCTGGA 21513364 Query 157210 TCTCTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCAAACGCAATC 157269 ||| | | ||||| | ||| || || | | |||| || ||||| |||| || || Sbjct 21513365 TCTTTACTTTATGGAAGCAATATTATTTTTTGTGCCATTATTCCTACTTCTGCAGCTATA 21513424 Query 157270 GGTCTTCACTTCTACCCCATCTGGGAAGCAGCATCACTTGATGAGTGGCTTTACAACGGT 157329 ||| | ||||| ||||| || |||||||| | || ||||||| ||| | ||||| ||| Sbjct 21513425 GGTTTGCACTTTTACCCTATATGGGAAGCGACTTCTGTTGATGAATGGTTATACAATGGT 21513484 Query 157330 GGTCCTTTCCAACTGGTAGTCTTTCACTTCCTGATCGGCATCTATGCCTATATGGGACGT 157389 ||||||| | || | || | |||||| | | || | | ||| |||| ||| Sbjct 21513485 GGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACGTGGGTCGT 21513544 Query 157390 GAGTGGGAACTTTCTTACCGTTTAGGTATGCGCCCCTGGATCTGTGTTGCCTACTC 157445 |||||||||||| || | | ||||| ||||| ||||| |||||| || || Sbjct 21513545 GAGTGGGAACTTAGTTTTYKTCTGGGTATACGCCCTTGGATTGTTGTTGCATATTC 21513600 >seq12 Length=31678690 Score = 104 bits (114), Expect = 3e-17 Identities = 101/129 (78%), Gaps = 1/129 (1%) Strand=Plus/Minus Query 159645 GCAGCAGAAGATCCAGAATTT-GAAACGTTCTACACCAAGAACATTCTTCTGAATGAAGG 159703 ||| | |||||||| |||||| || || ||||||||||| || ||||| | | |||||| Sbjct 15529651 GCAACGGAAGATCCTGAATTTTGAGACTTTCTACACCAAAAATATTCTCTTAAGTGAAGG 15529592 Query 159704 ACTACGTGCTTGGTTGGCACCTGCTGATCAACCCCATGAAAACTTCATCTTCCCAGAAGA 159763 | | ||||||| ||||| || |||||||| ||||||||| | || ||||| ||||| Sbjct 15529591 TATTCATGCTTGGATGGCARCTTAAGATCAACCTCATGAAAACCTTATATTCCCTGAAGA 15529532 Query 159764 AGTTCTACC 159772 ||| |||| Sbjct 15529531 GGTTTTACC 15529523 Score = 96.9 bits (106), Expect = 4e-15 Identities = 101/130 (78%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 159645 GCAGCAGAAGATCCAGAATTT-GAAACGTTCTACACCAAGAACATTCTTCTGAATGAAGG 159703 ||| | |||||||| |||||| || || ||||||||||| || ||||| | | |||||| Sbjct 15589922 GCAACGGAAGATCCTGAATTTTGAGACTTTCTACACCAAAAATATTCTCTTAAGTGAAGG 15589863 Query 159704 ACTACGTGCTTGGTTGGCACCTGCTGATCAACCCCATGAAAACTTCATCTTCCCAGAAGA 159763 | | ||||||| ||||| || |||||||| ||||||||| | || ||||| ||||| Sbjct 15589862 TATTCATGCTTGGATGGCARCTTAAGATCAACCTCATGAAAACCTTATATTCCCTGAAGA 15589803 Query 159764 -AGTTCTACC 159772 ||| |||| Sbjct 15589802 GGGTTTTACC 15589793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545265073284080