Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq9 273 3e-68 seq672 251 9e-62 seq1241 125 9e-24 seq11 125 9e-24 seq13 116 4e-21 seq1081 109 7e-19 seq629 96.9 4e-15 seq8 96.9 4e-15 seq725 82.4 9e-11 >seq9 Length=33717675 Score = 273 bits (302), Expect = 3e-68 Identities = 460/656 (70%), Gaps = 8/656 (1%) Strand=Plus/Plus Query 179066 GTTGGTACACCCATGGTCTTGCTAGTTCCTATCTTGAAGGTGCTAACTTTCTTACGGCA- 179124 ||||||| |||||| | | || ||||||||| | ||||| ||||||| |||| | | Sbjct 26714187 GTTGGTATACCCATAGATTAGCAAGTTCCTATTTGGAAGGCTCTAACTT-CTTAAGTGAT 26714245 Query 179125 GCTGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCT-ACTTTGGGGTCCTGA 179183 || || || || || ||| || | | | || | |||| || | ||| ||||||||||| Sbjct 26714246 GCAGTTTCCACTCCGGCTAATAGTTTAGCGCACT-TCTTGTTGTTACTATGGGGTCCTGA 26714304 Query 179184 GTCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCT 179243 | || || |||| || ||||| ||| | || | |||| || ||| || || || Sbjct 26714305 AGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCAGTCTATAGACTTTTGTTGCACT 26714364 Query 179244 CCACGGTGCCTTCGCCCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCA 179302 || || || |||| ||||| || || ||| | ||||| ||||| || || || ||| Sbjct 26714365 ACATGGCGCTTTCGAACTAATAGGTTT-ATGTTACGTCAATTTGAGCTTGCTCGATCTGT 26714423 Query 179303 TCGGTATCCGTCCTTACAATGCGATTGCTTTTACTGGTCCTATTGCCGTATTCGTTAGTG 179362 | | | | |||| ||||| ||||| || | ||||| ||||| || || ||| || Sbjct 26714424 TGAAT-TGTGACCTTGTAATGCAATTGCATTCTCCGGTCCAATTGCTGTTTT-GTTTCTG 26714481 Query 179363 TATTTCTCATCTACCCACTTGGACAATCCAGTTGGTTCTTTGCGCCATCGTTTGGTGTTG 179422 |||| || || || || | || || || |||||||||||||| || |||||||| | Sbjct 26714482 TATTCCTAATTTATCCGTTAGGTCAGTCTAGTTGGTTCTTTGCACCTAGTTTTGGTGTAG 26714541 Query 179423 CGGCGATCTTTAGATTCCTACTTTTCTTACAAGGTTTCCACAACTGGACACTCAACCCCT 179482 | || || ||| ||||| | || || || || || || || || |||||||| ||||| | Sbjct 26714542 CAGCTATATTTTGATTCATCCTCTTTTTYCAGGGGTTTCATAATTGGACACTAAACCCAT 26714601 Query 179483 TTCACATGATGGGAGTTGCAGGTATCCTGGGTGGTGCTCTGCTCTCTGCTATTCATGGAG 179542 |||| ||||||||||||| || | |||| | |||| || | | |||||||| || | Sbjct 26714602 TTCATATGATGGGAGTTGTTGGGGTGTTGGGCGCTGCTTTGTTATGCGCTATTCACGGTG 26714661 Query 179543 TAACTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTTAAAGCGTTCG 179602 | || | ||||| || | || |||||| || ||||| ||||| | ||| Sbjct 26714662 CTATCATAAAAAATACTTTATTTGGAGATGGTGATGGTGCAAATACATTCCGTGGTTTCA 26714721 Query 179603 ACTCTACGCAAGAGGAGGAGACCTATTCTATGGTTACAGCGAACCGTTTTTGGTCGCAGA 179662 || | || |||| || || || ||||| ||||| || | |||| |||||||| || | Sbjct 26714722 ACCCAACTCAAGTTGAAGAAACTTATTCAATGGTCACCACTAACCRCTTTTGGTCCCAAA 26714781 Query 179663 TCTTCGGGGTTCCGTTTAGCAATAAGCGTTGGTTCCACTTCTTTAAGCTGTTTGTT 179718 |||| ||||| | ||| |||||| |||||||| || ||| ||| | |||| || Sbjct 26714782 TCTTTAGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCAATAACCGGTTTATT 26714837 >seq672 Length=1945142 Score = 251 bits (278), Expect = 9e-62 Identities = 521/773 (67%), Gaps = 35/773 (5%) Strand=Plus/Minus Query 178949 TGGATGACTGGCTTAATCGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 179008 ||||||||||| | || | ||||| || ||||| ||||||||| | | |||| Sbjct 1649948 TGGATGACTGGTTACGAAGGAACCGCTTCGTTTTTGTAGGTTGGTCTAGCCAATTACTCT 1649889 Query 179009 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 179068 |||| ||| ||| | || | || |||||| | ||| ||| | || Sbjct 1649888 TTCCTTGTGCCTATTTYGCTTTAGGGGGTTGGTT-----GGAAT-------TTA--ATTT 1649843 Query 179069 GGTACACCCATGGTCTTGCTAGTTCCTATCTTGAAGGTGCTAACTTTCTTACGGCA-GCT 179127 |||| |||||| | | || ||||||||| | ||||| |||||| |||| | | || Sbjct 1649842 GGTATACCCATAGATTAGCAAGTTCCTATTTGGAAGGCTTTAACTT-CTTAAGTGATGCA 1649784 Query 179128 GTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCT-ACTTTGGGGTCCTGAGTC 179186 || || || || ||| || | | | || | |||| || | ||| ||||||||||| | Sbjct 1649783 GTTTCCACTCCGGCTAATAGTTTAGCGCACT-TCTTGTTGTTACTATGGGGTCCTGAAGC 1649725 Query 179187 TCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCA 179246 || || |||| || ||||| ||| | || | |||| || ||| || || || || Sbjct 1649724 ACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCAGTCTATAGACTTTTGTTGCACTACA 1649665 Query 179247 CGGTGCCTTCGCCCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCG 179305 || || |||| ||||| || || ||| | ||||| ||||| || || || ||| | Sbjct 1649664 TGGCGCTTTCGGACTAATAGGTTT-ATGTTACGTCAATTTGAGCTTGCTCGATCTGTTSA 1649606 Query 179306 GTATCCGTCCTTACAATGCGATTGCTTTTACTGGTCCTATTGCCGTATTCGTTAGTGTAT 179365 | | | |||| ||||| ||||| || | ||||| ||||| || || ||| ||||| Sbjct 1649605 AT-TGTGACCTTRTAATGCAATTGCATTCTCCGGTCCAATTGCTGTTTTTGTTTCTGTAT 1649547 Query 179366 TTCTCATCTACCCACTTGGACAATCCAGTTGGTTCTTTGCGCCATCGTTTGGTGTTGCGG 179425 | || || || | | || || || ||||||||||||| || |||||||| || | Sbjct 1649546 TCCTAATTTATCYRTTAGGTCAGTCTRGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCAG 1649487 Query 179426 CGATCTTTAGATTCCTACTTTTCTTACAAGGTTTCCACAACTGGACACTCAACCCCTTTC 179485 | || ||| ||||| | || || || || || || || || |||||||| ||||| |||| Sbjct 1649486 CTATATTTTGATTCATCCTCTTTTTYCAGGGGTTTCATAATTGGACACTAAACCCATTTC 1649427 Query 179486 ACATGATGGGAGTTGCAGGTATCCTGGGTGGTGCTCTGCTCTCTGCTATTCATGGAGTAA 179545 | ||||||||||||| || | |||| | |||| || | | |||||||| || | | Sbjct 1649426 ATATGATGGGAGTTGTTGGGGTGTTGGGCGCTGCTYTGTTATGCGCTATTCACGGTGCTA 1649367 Query 179546 CTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTTAAAGCGTTCGACT 179605 || | ||||| || | || |||||| ||| ||| ||| || Sbjct 1649366 TCATARAAAATACTTTATTTGGAGATGGGGAA-----------ATT---CCGGTTTAACC 1649321 Query 179606 CTACGCAAGAGGAGGAGACCTATTCTATGGTTACAGCGAACCGTTTTTGGTCGCAGATCT 179665 | || |||| || || || ||||| ||||| || | |||| |||||||| || |||| Sbjct 1649320 CAACTCAAGTTGAAGAAACTTATTCAATGGTCACCACTAACCRCTTTTGGTCCCAAATCT 1649261 Query 179666 TCGGGGTTCCGTTTAGCAATAAGCGTTGGTTCCACTTCTTTAAGCTGTTTGTT 179718 | ||||| | ||| |||||| |||||||| || ||| ||| | |||| || Sbjct 1649260 TTAGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCAATAACCGGTTTATT 1649208 >seq1241 Length=4265459 Score = 125 bits (138), Expect = 9e-24 Identities = 245/356 (69%), Gaps = 6/356 (2%) Strand=Plus/Minus Query 177600 GGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGT 177658 || ||||| || || ||||||| | ||| | ||| | |||||| |||| || || | Sbjct 4250727 GGATGGTTTGGTGTTTTGATGATCCTTACTTTATTGACCGCAACT-TCTGTATTTATTAT 4250669 Query 177659 CGCCTTCGTCGCTGCTCCCCCCGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTC 177718 || ||| | ||||| || || | || || || || || |||||||| || |||| || Sbjct 4250668 TGCTTTCATTGCTGCACCTCCAATAGATATTGATGGTATTCGTGAACCTGTTTCTGGATC 4250609 Query 177719 ACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGG 177778 | | ||||| | ||| || || | | |||| || | || |||| || || || Sbjct 4250608 TTTACTTTATGGAAGCAATATTATTTTTTGTGCCATTATTCCTACTTCTGCAGCTATAGG 4250549 Query 177779 TCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGG 177838 | | ||||| || || || |||||||| | || ||||||| ||| | || || ||||| Sbjct 4250548 TTTGCACTTTTACCCTATATGGGAAGCGACTTCTGTTGATGAATGGTTATACAATGGTGG 4250489 Query 177839 TCCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCAT--CTATGCATATATGGGACGT 177896 ||||| | || | || | |||||| | | || | || ||| || |||| ||| Sbjct 4250488 TCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCT-TGC-TACGTGGGTCGT 4250431 Query 177897 GAGTGGGAACTTTCATACCGTCTAGGTATGCGCCCCTGGATCTGTGTTGCATACTC 177952 |||||||||||| | ||||| ||||| ||||| ||||| ||||||||| || Sbjct 4250430 GAGTGGGAACTTAGTTTTCGTCTGGGTATACGCCCTTGGATTGTTGTTGCATATTC 4250375 >seq11 Length=35299535 Score = 125 bits (138), Expect = 9e-24 Identities = 206/297 (69%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 179655 GTCGCAGATCTTCGGGGTTCCGTTTAGCAATAAGCGTTGGTTCCACTTCTTTAAGCTGTT 179714 ||| || ||||| |||||| | || |||||| | |||||| || ||| ||| | | || Sbjct 68910 GTCCCACATCTTTGGGGTTGCTGTTTCCAATAAACATTGGTTACATTTCCTTATGTTATT 68851 Query 179715 TGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTAGCTCTTAATCT 179774 ||| | || | ||| | ||| | | || ||| | | || || || | || || Sbjct 68850 TGTACTAGTAACCGGTTTATGGATGAGTGCTCTTGAAGTAGTGGGTCTGGCCTTGAACCT 68791 Query 179775 TCGTGCTTATGATTTTGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAGAC 179834 |||| ||||||||||| ||| | ||| | || |||||||||||| || ||||| Sbjct 68790 ACGTGTCTATGATTTTGTTTCTCAGAAAATCCATGTAGTAGAAGATCCTGAATTTGAGAC 68731 Query 179835 GTTCTATACAAAGAACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGA 179894 ||||| || || || ||||| | |||||||| ||| ||||||| ||| || || Sbjct 68730 TTTCTAAACCAACAATATTCTCTTAAATGAAGGTATACATGCTTGGATGGTGGCTCAAGA 68671 Query 179895 TCAACCACATGAAAACTTCATCTTCCCAGAAGAAGTCCTACCTAGTGGTAACGCACT 179951 ||| || |||||||| | || ||||| || || || |||| |||| ||||| || Sbjct 68670 TCAGCCTTATGAAAACCTTATATTCCCTGAGGAGGTTTTACCCCGTGGAAACGCTCT 68614 Score = 82.4 bits (90), Expect = 9e-11 Identities = 103/140 (74%), Gaps = 1/140 (1%) Strand=Plus/Plus Query 179813 CAGAAGATCCTGAGTTCGAGACGTTCTATACAAAGAACATTCTTCTGAATGAAGGACTAC 179872 || ||||||||||||| ||||| |||| ||||| || ||||| | |||||||| | | Sbjct 34851773 CAAAAGATCCTGAGTTTGAGACTCTCTACACAAAAAATATTCTCTTAAATGAAGGTATTC 34851832 Query 179873 GTGCTTGGTTGGCACCTGCTGATCAACCACATGAAAACT-TCATCTTCCCAGAAGAAGTC 179931 |||||||| |||| || ||| | || |||||||| | | || ||| || || || Sbjct 34851833 GTGCTTGGATGGCGGCTCAAGATTAGCCTCATGAAAAATCTTATAATCCTTGAGGAGGTT 34851892 Query 179932 CTACCTAGTGGTAACGCACT 179951 ||||| || | ||||| || Sbjct 34851893 CTACCCCGTAGAAACGCTCT 34851912 >seq13 Length=34719086 Score = 116 bits (128), Expect = 4e-21 Identities = 242/356 (68%), Gaps = 6/356 (2%) Strand=Plus/Plus Query 177600 GGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGT 177658 || ||||| || || ||||||| | ||| | ||| | |||||| |||| || || | Sbjct 21513248 GGATGGTTTGGTGTTTTGATGATCCTTACTTTATTGACCGCAACT-TCTGTATTTATTAT 21513306 Query 177659 CGCCTTCGTCGCTGCTCCCCCCGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTC 177718 || ||| | |||| || || | || || || || || |||||||| || |||| || Sbjct 21513307 TGCTTTCATTRCTGCACCTCCAATAGATATTGATGGTATTCGTGAACCTGTTTCTGGATC 21513366 Query 177719 ACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGG 177778 | | ||||| | ||| || || | | |||| || | || |||| || || || Sbjct 21513367 TTTACTTTATGGAAGCAATATTATTTTTTGTGCCATTATTCCTACTTCTGCAGCTATAGG 21513426 Query 177779 TCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGG 177838 | | ||||| || || || |||||||| | || ||||||| ||| | || || ||||| Sbjct 21513427 TTTGCACTTTTACCCTATATGGGAAGCGACTTCTGTTGATGAATGGTTATACAATGGTGG 21513486 Query 177839 TCCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCAT--CTATGCATATATGGGACGT 177896 ||||| | || | || | |||||| | | || | || ||| || |||| ||| Sbjct 21513487 TCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCT-TGC-TACGTGGGTCGT 21513544 Query 177897 GAGTGGGAACTTTCATACCGTCTAGGTATGCGCCCCTGGATCTGTGTTGCATACTC 177952 |||||||||||| | ||| ||||| ||||| ||||| ||||||||| || Sbjct 21513545 GAGTGGGAACTTAGTTTTYKTCTGGGTATACGCCCTTGGATTGTTGTTGCATATTC 21513600 >seq1081 Length=585217 Score = 109 bits (120), Expect = 7e-19 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 179389 TCCAGTTGGTTCTTTGCGCCATCGTTTGGTGTTGCGGCGATCTTTAGATTCCTACTTTTC 179448 || |||||||||||||||| ||| |||| || || || ||| ||||| | || || Sbjct 578917 TCTAGTTGGTTCTTTGCGCTCAATTTTCGTGTGGCAGCTATATTTTGATTCATCCTCTTT 578858 Query 179449 TTACAAGGTTTCCACAACTGGACACTCAACCCCTTTCACATGATGGGAGTTGCAGGTATC 179508 || || || || || || || ||| | ||| ||||| |||||| |||||| || | Sbjct 578857 TTCCAGGGGTTTCATAATTGAACATTGAACTYATTTCATATGATGAGAGTTGTTGGAGTG 578798 Query 179509 CTGGGTGGTGCTCTGCTCTCTGCTATTCATGGAGTAACTGTAGAGAATACATTGTATGAA 179568 |||| |||||| | | |||||||||| || |||||||| |||| || | |||| Sbjct 578797 TTGGGCACTGCTCTRTTATGCACTATTCATGGTGTTACTGTAGAAGATACTTTATTTGAA 578738 Query 179569 GATGGAGAACAAGCAAACACATT 179591 ||||| || ||||| ||||| Sbjct 578737 GATGGTGATGGTGCAAATACATT 578715 >seq629 Length=2291386 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 178188 ACGACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACATAT 178247 || ||||||| ||| | || || ||||||| || || ||||| |||||||| || Sbjct 2030054 ACCACAGAAAATGAATATGCTAATTACGGTTACAGATTTGGTCAAGAGGAAGAAACCTAC 2029995 Query 178248 AACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCGTTCAAC 178307 || ||||| || || |||||||| || || | ||||||||||||||||| || ||| Sbjct 2029994 AATATCGTAGCGGCTCATGGTTATTTTGGCTGATTGATCTTCCAATATGCTAGTTTGAAC 2029935 Query 178308 AACTCCCGTTCACTGCACTTCTT 178330 ||||| | ||| | |||||||| Sbjct 2029934 AACTCTCATTCTTTACACTTCTT 2029912 >seq8 Length=29603939 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 178188 ACGACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACATAT 178247 || ||||||| ||| | || || ||||||| || || ||||| |||||||| || Sbjct 4091897 ACCACAGAAAATGAATATGCTAATTACGGTTACAGATTTGGTCAAGAGGAAGAAACCTAC 4091956 Query 178248 AACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCGTTCAAC 178307 || ||||| || || |||||||| || || | ||||||||||||||||| || ||| Sbjct 4091957 AATATCGTAGCGGCTCATGGTTATTTTGGCTGATTGATCTTCCAATATGCTAGTTTGAAC 4092016 Query 178308 AACTCCCGTTCACTGCACTTCTT 178330 ||||| | ||| | |||||||| Sbjct 4092017 AACTCTCATTCTTTACACTTCTT 4092039 >seq725 Length=1948186 Score = 82.4 bits (90), Expect = 9e-11 Identities = 103/140 (74%), Gaps = 1/140 (1%) Strand=Plus/Plus Query 179813 CAGAAGATCCTGAGTTCGAGACGTTCTATACAAAGAACATTCTTCTGAATGAAGGACTAC 179872 || ||||||||||||| ||||| |||| ||||| || ||||| | |||||||| | | Sbjct 1573254 CAAAAGATCCTGAGTTTGAGACTCTCTACACAAAAAATATTCTCTTAAATGAAGGTATTC 1573313 Query 179873 GTGCTTGGTTGGCACCTGCTGATCAACCACATGAAAACT-TCATCTTCCCAGAAGAAGTC 179931 |||||||| |||| || ||| | || |||||||| | | || ||| || || || Sbjct 1573314 GTGCTTGGATGGCGGCTCAAGATTAGCCTCATGAAAAATCTTATAATCCTTGAGGAGGTT 1573373 Query 179932 CTACCTAGTGGTAACGCACT 179951 ||||| || | ||||| || Sbjct 1573374 CTACCCCGTAGAAACGCTCT 1573393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605657728879160