Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq176 89.7 1e-12 seq7 87.8 4e-12 seq325 86.0 1e-11 seq55 86.0 1e-11 seq2 86.0 1e-11 seq1241 84.2 5e-11 seq855 84.2 5e-11 >seq176 Length=2116299 Score = 89.7 bits (98), Expect = 1e-12 Identities = 200/295 (68%), Gaps = 6/295 (2%) Strand=Plus/Plus Query 279806 GAATTTATTGATAAAGAACTGATCCATTTTTCTAATTATGATGTTCATCGTTCTATTCC- 279864 || ||| || | || ||||| || || ||||| | || | || | |||||||| Sbjct 1040773 GACTTTGTTCACAAGGAACTTATACAGTTTTCCATGGCAGACCTGCAAAGGTCTATTCCG 1040832 Query 279865 TCATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGTTTCAAAAG 279924 ||| | | ||||| ||||| || || | |||||| | || || | ||| || || Sbjct 1040833 TCAATGG-TAGATGGYTTGAAGCCAGGTCAAAGGAAGATTCTCTTTAGCTCTTTTAAGAG 1040891 Query 279925 AAAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATGCAGG 279984 || || || |||||| ||||| ||||| | |||||||| || || ||| | | Sbjct 1040892 GAACTTTGTCAAGGAAGCAAAAGTTGCCCAGTTTTCTGGTTATGTGTCTGAGCATTCTGC 1040951 Query 279985 TTATCATCACGGTGA--AGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCCAAGATTTT 280042 || || || ||||| || |||| | |||| | ||||| | || | || || |||||| Sbjct 1040952 CTACCACCATGGTGAGCAGAGTCT-TGCAAG-TACTATTATTGGGATGGCACAGGATTTT 1041009 Query 280043 ATGGCTTCAAACAACTTAAATCTGCTTTCACCAAATGGTCAATTTGGTTCTCGTA 280097 ||| || || | ||||| ||| ||||||||||||||||||| | |||| Sbjct 1041010 GTGGGGAGCAATAATATCAATCTTCTTCAACCAAATGGTCAATTTGGTACCCGTA 1041064 >seq7 Length=26383534 Score = 87.8 bits (96), Expect = 4e-12 Identities = 200/295 (68%), Gaps = 6/295 (2%) Strand=Plus/Minus Query 279806 GAATTTATTGATAAAGAACTGATCCATTTTTCTAATTATGATGTTCATCGTTCTATTCC- 279864 || ||| || | || ||||| || || ||||| | || | || | |||||||| Sbjct 1246949 GACTTTGTTCACAAGGAACTTATACAGTTTTCCATGGCAGACCTGCAAAGGTCTATTCCG 1246890 Query 279865 TCATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGTTTCAAAAG 279924 ||| | | ||||| ||||| || || | |||||| | || || | ||| || || Sbjct 1246889 TCAATGG-TAGATGGCTTGAAGCCAGGTCAAAGGAAGATTCTCTTTAGCTCTTTTAAGAG 1246831 Query 279925 AAAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATGCAGG 279984 || || || |||||| ||||| ||||| | |||||||| || || ||| | | Sbjct 1246830 GAACTTTGTCAAGGAAGCAAAAGTTGCCCAGTTTTCTGGTTATGTGTCTGAGCATTCTGC 1246771 Query 279985 TTATCATCACGGTGA--AGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCCAAGATTTT 280042 || || || ||||| || |||| | |||| | ||||| | || | || || |||||| Sbjct 1246770 CTACCACCATGGTGAGCAGAGTCT-TGCAAG-TACTATTATTGGGATGGCACAGGATTTT 1246713 Query 280043 ATGGCTTCAAACAACTTAAATCTGCTTTCACCAAATGGTCAATTTGGTTCTCGTA 280097 ||| || || | ||||| ||| ||||||||||||||||||| | |||| Sbjct 1246712 GTGGGGAGCAATAATATCAATCTTCTTCAACCAAATGGTCAATTTGGTACCCGTA 1246658 >seq325 Length=8951201 Score = 86.0 bits (94), Expect = 1e-11 Identities = 121/164 (74%), Gaps = 12/164 (7%) Strand=Plus/Plus Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389 || || |||||| | ||||| ||||||||||||||| | |||| || |||||||| Sbjct 8779204 GTGCTCTTCAATCGTCAACCTAGTCTGCATAAAATGTCTCTTATGGGGCACAAAGTCAAG 8779263 Query 305390 GTATTAT-CTGGATTGA-CATTTCGATTAAAT--GTAAGTG--CTTGTACGCCTTATAAT 305443 || || | | | | | ||||||| || ||| || ||| |||| || |||||| Sbjct 8779264 --ATCATGCCGTACTCAACATTTCGCTTGAATCTGTCTGTGACCTTG----CCATATAAT 8779317 Query 305444 GCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATC 305487 || || |||||||| ||||||||||| ||||| ||||| || || Sbjct 8779318 GCTGACTTTGATGGGGATGAAATGAACATGCACGTACCCCAGTC 8779361 >seq55 Length=2015086 Score = 86.0 bits (94), Expect = 1e-11 Identities = 121/164 (74%), Gaps = 12/164 (7%) Strand=Plus/Minus Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389 || || |||||| | ||||| ||||||||||||||| | |||| || |||||||| Sbjct 787354 GTGCTCTTCAATCGTCAACCTAGTCTGCATAAAATGTCTCTTATGGGGCACAAAGTCAAG 787295 Query 305390 GTATTAT-CTGGATTGA-CATTTCGATTAAAT--GTAAGTG--CTTGTACGCCTTATAAT 305443 || || | | | | | ||||||| || ||| || ||| |||| || |||||| Sbjct 787294 --ATCATGCCGTACTCAACATTTCGCTTGAATCTGTCTGTGACCTTG----CCATATAAT 787241 Query 305444 GCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATC 305487 || || |||||||| ||||||||||| ||||| ||||| || || Sbjct 787240 GCTGACTTTGATGGGGATGAAATGAACATGCACGTACCCCAGTC 787197 >seq2 Length=36374806 Score = 86.0 bits (94), Expect = 1e-11 Identities = 121/164 (74%), Gaps = 12/164 (7%) Strand=Plus/Minus Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389 || || |||||| | ||||| ||||||||||||||| | |||| || |||||||| Sbjct 10672769 GTGCTCTTCAATCGTCAACCTAGTCTGCATAAAATGTCTCTTATGGGGCACAAAGTCAAG 10672710 Query 305390 GTATTAT-CTGGATTGA-CATTTCGATTAAAT--GTAAGTG--CTTGTACGCCTTATAAT 305443 || || | | | | | ||||||| || ||| || ||| |||| || |||||| Sbjct 10672709 --ATCATGCCGTACTCAACATTTCGCTTGAATCTGTCTGTGACCTTG----CCATATAAT 10672656 Query 305444 GCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATC 305487 || || |||||||| ||||||||||| ||||| ||||| || || Sbjct 10672655 GCTGACTTTGATGGGGATGAAATGAACATGCACGTACCCCAGTC 10672612 >seq1241 Length=4265459 Score = 84.2 bits (92), Expect = 5e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 131864 GTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGG 131923 || || ||||| || || || || || ||||| || || |||||| || || |||||| Sbjct 519923 GTGGCCTTTGCCTGCGTGGAGGGGATTTTCTTCTCGGGGAGTTTCTGCGCGATATTTTGG 519864 Query 131924 CTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGAT 131983 ||||| ||||| || || ||||| ||||| | || ||||| || | |||||| |||| Sbjct 519863 CTTAAAAAGCGCGGTTTAATGCCGGGACTGACTTTCTCCAACGAACTGATCTCGCGAGAC 519804 Query 131984 GAAGCATTGCA 131994 || | ||||| Sbjct 519803 GAGGGCTTGCA 519793 >seq855 Length=4499644 Score = 84.2 bits (92), Expect = 5e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 131864 GTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGG 131923 || || ||||| || || || || || ||||| || || |||||| || || |||||| Sbjct 754029 GTGGCCTTTGCCTGCGTGGAGGGGATTTTCTTCTCGGGGAGTTTCTGCGCGATATTTTGG 753970 Query 131924 CTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGAT 131983 ||||| ||||| || || ||||| ||||| | || ||||| || | |||||| |||| Sbjct 753969 CTTAAAAAGCGCGGTTTAATGCCGGGACTGACTTTCTCCAACGAACTGATCTCGCGAGAC 753910 Query 131984 GAAGCATTGCA 131994 || | ||||| Sbjct 753909 GAGGGCTTGCA 753899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186793777245211