Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq699 100 2e-16 seq790 98.7 7e-16 seq111 98.7 7e-16 seq325 95.1 8e-15 seq96 95.1 8e-15 seq13 95.1 8e-15 seq673 91.5 1e-13 seq449 86.0 4e-12 seq324 86.0 4e-12 seq275 86.0 4e-12 seq17 86.0 4e-12 seq5 86.0 4e-12 >seq699 Length=1873381 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||||||| || || ||| || || |||||||| || | Sbjct 140070 ACCACCGCGGAGACGAAGCACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGC 140011 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || | |||| |||| || || |||||||| ||||| | |||||| ||| | || Sbjct 140010 TAGGGTCCTGCCGTCCTCCAGCTGCTTACCGGCAAAGATCAACCTCTGCTGGTCTGGGGG 139951 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | ||||| ||||| ||||| || | ||| |||| ||| ||| ||| |||| Sbjct 139950 AATGCCTTCCTTGTCTTGGATTTTGGCCTTGA-CATTGTCAATGGTATCGGATGACTCCA 139892 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||| ||||| || || || || | || || || ||||||||||| Sbjct 139891 CCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTAACGAAGATCTGCAT 139843 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | |||||| || || || |||||| || |||||||| || | Sbjct 139841 CCACCACGAAGACGGAGCACCAAGTGGAGGGTTGACTCTTTCTGGATGTTGTAGTCTGCA 139782 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || || | || ||||||||||| |||| ||||||||| ||| | || Sbjct 139781 AGGGTACGGCCATCTTCGAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGA 139722 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || | | || | ||| | ||||||| ||| ||||| Sbjct 139721 ATCCCTTCCTTGTCTTGGATCTT-GGCCTTGACGTTGTCGATGGTGTCGGATGACTCCAC 139663 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || || |||||||||||||| Sbjct 139662 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTAACAAAGATCTGCAT 139615 >seq790 Length=2681026 Score = 98.7 bits (108), Expect = 7e-16 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||| || || ||| ||| || || |||||||| |||| ||| ||||| |||| || Sbjct 2380157 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCG 2380098 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | || || ||||| || || | |||||||| || |||| | ||||| ||||| Sbjct 2380097 AGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGAATGCCTTCCTTGTCTTGG 2380038 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || || || | ||| ||| | ||||||| || || || || | ||||| || || Sbjct 2380037 ATCTTGGCCTTGA-CATTGTCGATGGTGTCGGAGGACTCGACCTCTAGGGTGATGGTCTT 2379979 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGG 33755 ||| |||| ||||| || ||||||||||| ||||| Sbjct 2379978 ACCCGTTAGGGTTTTCACGAAGATCTGCATGGTTGG 2379943 >seq111 Length=1131199 Score = 98.7 bits (108), Expect = 7e-16 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| ||||| || | |||||||| | ||| ||| ||||| ||||||||||| | Sbjct 723098 ACCACCCCTCAATCGAAGGACCAAATGCAAAGTTGACTCCTTTTGGATGTTGTAATCCGC 723157 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || | | || |||||||| || |||||||| ||||| | |||||||||| | || Sbjct 723158 CAGAGTCCTGCCATCTTCCAATTGCTTACCGGCAAAGATCAATCTCTGCTGATCTGGAGG 723217 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCA 33673 | ||| || ||||| |||||| ||||| Sbjct 723218 AATACCCTCCTTGTCTTGAATTTTTGCTTTCA 723249 >seq325 Length=8951201 Score = 95.1 bits (104), Expect = 8e-15 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || |||||| ||| || || |||||||| |||| ||| || || |||| || Sbjct 8316246 CACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCCTC 8316187 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || || || ||||| || || | |||||||| || |||| | || || ||||| Sbjct 8316186 CAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTG 8316127 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || || |||| ||| ||| | ||||||| || || || || | || ||||| | Sbjct 8316126 GATCTTGGCCTTCA-CATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTTATCGTCT 8316068 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || |||| ||||| || ||||||||||| Sbjct 8316067 TCCCCGTTAGGGTTTTCACGAAGATCTGCAT 8316037 >seq96 Length=1311920 Score = 95.1 bits (104), Expect = 8e-15 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| || || |||||||| |||| ||| ||||| |||| || | || Sbjct 515483 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGC 515424 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || |||||||| |||| | ||||| ||| | || | |||||| ||||| || || Sbjct 515423 TTGCCGGCAAATATCAGCCTTTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGGATCTTG 515364 Query 33667 TGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 ||| | ||| |||| ||||||| ||| || || | ||||| || || || || Sbjct 515363 GCTTTGA-CATTGTCAATGGTGTCGGAGCTTTCAACCTCGAGGGTGATGGTCTTTCCGGT 515305 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 || ||||| |||||||||||||| Sbjct 515304 TAGGGTTTTCACAAAGATCTGCAT 515281 >seq13 Length=34719086 Score = 95.1 bits (104), Expect = 8e-15 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || |||||| ||| || || |||||||| |||| ||| || || |||| || Sbjct 8292194 CACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCCTC 8292253 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || || || ||||| || || | |||||||| || |||| | || || ||||| Sbjct 8292254 CAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTG 8292313 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || || |||| ||| ||| | ||||||| || || || || | || ||||| | Sbjct 8292314 GATCTTGGCCTTCA-CATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTTATCGTCT 8292372 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || |||| ||||| || ||||||||||| Sbjct 8292373 TCCCCGTTAGGGTTTTCACGAAGATCTGCAT 8292403 >seq673 Length=4704030 Score = 91.5 bits (100), Expect = 1e-13 Identities = 164/237 (69%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || || | ||||| || ||||| ||| || || |||||||| |||| Sbjct 4141980 CCACCGCGCAGGCGGAGCACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCA 4141921 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || |||| |||| || || ||||| || || | |||||||| || |||| Sbjct 4141920 AGGGTCCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGG 4141861 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || |||| ||| ||| | ||||||| || || || Sbjct 4141860 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCA-CATTGTCGATGGTGTCGGAAGACTCAAC 4141802 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGGTGT 33758 || | || ||||| || || |||| ||||| || ||||||||||| ||| ||| Sbjct 4141801 CTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTTTGCTGT 4141745 >seq449 Length=2648660 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || ||||| ||| || || |||||||| |||| ||| || || |||| || Sbjct 2148486 CACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCCTC 2148545 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || || || ||||| || || | |||||||| || |||| | || || ||||| Sbjct 2148546 CAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTG 2148605 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || || |||| ||| ||| | ||||||| || || || || | || ||||| | Sbjct 2148606 GATCTTGGCCTTCA-CATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTTATCGTCT 2148664 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | ||||| || ||||||||||| Sbjct 2148665 TCCCCGTCAGGGTTTTCACGAAGATCTGCAT 2148695 >seq324 Length=8003036 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || ||||| ||| || || |||||||| |||| ||| || || |||| || Sbjct 1599024 CACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCCTC 1598965 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || || || | ||| || || | |||||||| || |||| | || || ||||| Sbjct 1598964 CAGCTGCTTGCTGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTG 1598905 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || || |||| ||| ||| | ||||||| || || || || | || ||||| | Sbjct 1598904 GATCTTGGCCTTCA-CATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTTATCGTCT 1598846 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || |||| ||||| || ||||||||||| Sbjct 1598845 TCCCCGTTAGGGTTTTCACGAAGATCTGCAT 1598815 >seq275 Length=2000977 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/208 (70%), Gaps = 8/208 (4%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| || || ||||||||||| | || || | | || ||||| || Sbjct 275274 TGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCCAGGGTCCTCCCATCCTCCAACTGC 275333 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 ||||| || |||||||| | |||||| || | || | ||||| ||||| ||| || Sbjct 275334 TTTCCAGCGAAAATCAACCTCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGAATCTTA 275393 Query 33667 TGTTTCAACATAGTC-ACGGTGTC---GCTTGATTCCACGTCAACCGTGATCGTTTTACC 33722 ||| |||| ||| | |||||| ||| ||||| || | ||||| || || || Sbjct 275394 GCCTTC-ACATTGTCGATGGTGTCAGAGCT---CTCCACCTCCAAGGTGATGGTCTTTCC 275449 Query 33723 TGTTAACGTTTTTACAAAGATCTGCATA 33750 ||| || || || || |||||||||||| Sbjct 275450 TGTCAAGGTCTTCACGAAGATCTGCATA 275477 >seq17 Length=24923725 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || ||||| ||| || || |||||||| |||| ||| || || |||| || Sbjct 24420830 CACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCCTC 24420889 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || || || ||||| || || | |||||||| || |||| | || || ||||| Sbjct 24420890 CAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTG 24420949 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || || |||| ||| ||| | ||||||| || || || || | || ||||| | Sbjct 24420950 GATCTTGGCCTTCA-CATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTTATCGTCT 24421008 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | ||||| || ||||||||||| Sbjct 24421009 TCCCCGTCAGGGTTTTCACGAAGATCTGCAT 24421039 >seq5 Length=31606955 Score = 86.0 bits (94), Expect = 4e-12 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| | |||||| || || || ||| || || |||||||| |||| Sbjct 1684198 CCACCACGCAGACGGAGCACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGCA 1684139 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || | | || || | |||||||| || || ||||| | |||||| ||| | || Sbjct 1684138 AGGGTCCTGCCATCCTCTAGCTGTTTTCCAGCGAAGATCAATCTCTGCTGGTCTGGGGGA 1684079 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | ||||| ||||| ||| || || | | | |||| ||||||| ||| || Sbjct 1684078 ATCCCTTCCTTGTCTTGAATCTTGGCCTTGA-CGTTGTCAATGGTGTCGGAGCTTTCGAC 1684020 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || || | || || |||||||||||||| Sbjct 1684019 CTCAAGGGTGATAGTCTTRCCGGTGAGGGTCTTGACAAAGATCTGCAT 1683972 Score = 84.2 bits (92), Expect = 1e-11 Identities = 145/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| || || ||||||||||| | || || | | | || ||||| || Sbjct 1685086 TGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGCCAGGGTCCTTCCATCCTCCAACTGC 1685027 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || || || || ||||| | |||||| || | || | ||| || ||||| || || Sbjct 1685026 TTACCAGCRAAGATCAACCTCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGGATCTT- 1684968 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGAT-TCCACGTCAACCGTGATCGTTTTACCTG 33724 || | |||| ||| | |||||| | | | ||||| || | ||||| || || |||| Sbjct 1684967 TGCCTTCACATTGTCGATGGTGTC-CGAGCTCTCCACCTCCAAGGTGATGGTCTTCCCTG 1684909 Query 33725 TTAACGTTTTTACAAAGATCTGCATA 33750 | || || || ||||||||||||||| Sbjct 1684908 TCAAGGTCTTCACAAAGATCTGCATA 1684883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328698988393920