Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq1241 136 1e-27 seq13 129 2e-25 seq629 113 1e-20 seq8 113 1e-20 >seq1241 Length=4265459 Score = 136 bits (150), Expect = 1e-27 Identities = 258/369 (70%), Gaps = 12/369 (3%) Strand=Plus/Minus Query 19537 TCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACCATCTG 19596 |||||| |||| |||||||| ||||||| || | | ||| || | |||| Sbjct 4250737 TCTTTACATTGGATGGTTTGGTGTTTTGATGAT-CCTTACTTTATTGACCGCAACTTCTG 4250679 Query 19597 C-TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGAACCCG 19655 || |||||||| |||||||| || || ||| | || |||||||| || || ||||| | Sbjct 4250678 TATTTATTATTGCTTTCATTGCTGCACCTCCAATAGATATTGATGGTATTCGTGAACCTG 4250619 Query 19656 TATCCGGTAGCCTT-CTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG--CA 19712 | || || | | || |||||||||| ||| || || | | ||| | |||| | | Sbjct 4250618 TTTCTGG-ATCTTTACTTTATGGAAGCAATATTATTTTTTGTGCCATTATTCCTACTTCT 4250560 Query 19713 GCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAATGGC 19772 ||| || || || | ||||| ||||| || |||||||| | ||| ||||||||||| Sbjct 4250559 GCA--GCTATAGGTTTGCACTTTTACCCTATATGGGAAGCGACTTCTGTTGATGAATGGT 4250502 Query 19773 TCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCAT--CTATGC 19830 | ||||| || || || | | || | || | |||||| | |||| | || ||| Sbjct 4250501 TATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCT-TGC 4250443 Query 19831 TTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGT 19890 | || |||| || |||||||||||||| | ||| || || || | ||||||||| ||| Sbjct 4250442 T-ACGTGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATACGCCCTTGGATTGTTGT 4250384 Query 19891 TGCCTACTC 19899 ||| || || Sbjct 4250383 TGCATATTC 4250375 >seq13 Length=34719086 Score = 129 bits (142), Expect = 2e-25 Identities = 258/374 (69%), Gaps = 12/374 (3%) Strand=Plus/Plus Query 19537 TCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACCATCTG 19596 |||||| |||| |||||||| ||||||| || | | ||| || | |||| Sbjct 21513238 TCTTTACATTGGATGGTTTGGTGTTTTGATGAT-CCTTACTTTATTGACCGCAACTTCTG 21513296 Query 19597 C-TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGAACCCG 19655 || |||||||| |||||| | || || ||| | || |||||||| || || ||||| | Sbjct 21513297 TATTTATTATTGCTTTCATTRCTGCACCTCCAATAGATATTGATGGTATTCGTGAACCTG 21513356 Query 19656 TATCCGGTAGCCTT-CTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG--CA 19712 | || || | | || |||||||||| ||| || || | | ||| | |||| | | Sbjct 21513357 TTTCTGG-ATCTTTACTTTATGGAAGCAATATTATTTTTTGTGCCATTATTCCTACTTCT 21513415 Query 19713 GCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAATGGC 19772 ||| || || || | ||||| ||||| || |||||||| | ||| ||||||||||| Sbjct 21513416 GCA--GCTATAGGTTTGCACTTTTACCCTATATGGGAAGCGACTTCTGTTGATGAATGGT 21513473 Query 19773 TCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCAT--CTATGC 19830 | ||||| || || || | | || | || | |||||| | |||| | || ||| Sbjct 21513474 TATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCT-TGC 21513532 Query 19831 TTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGT 19890 | || |||| || |||||||||||||| | | || || || | ||||||||| ||| Sbjct 21513533 T-ACGTGGGTCGTGAGTGGGAACTTAGTTTTYKTCTGGGTATACGCCCTTGGATTGTTGT 21513591 Query 19891 TGCCTACTCTGCTC 19904 ||| || || ||| Sbjct 21513592 TGCATATTCARCTC 21513605 >seq629 Length=2291386 Score = 113 bits (124), Expect = 1e-20 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 20156 AACTATGGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGT 20215 || || ||||||| ||||| ||||| ||||| ||||| || |||||||| ||||||||| Sbjct 2030033 AATTACGGTTACAGATTTGGTCAAGAGGAAGAAACCTACAATATCGTAGCGGCTCATGGT 2029974 Query 20216 TACTTTGGACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTC 20275 || ||||| | |||||||||||||| ||| ||| ||||| | |||| |||||||| Sbjct 2029973 TATTTTGGCTGATTGATCTTCCAATATGCTAGTTTGAACAACTCTCATTCTTTACACTTC 2029914 Query 20276 TT 20277 || Sbjct 2029913 TT 2029912 >seq8 Length=29603939 Score = 113 bits (124), Expect = 1e-20 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 20156 AACTATGGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGT 20215 || || ||||||| ||||| ||||| ||||| ||||| || |||||||| ||||||||| Sbjct 4091918 AATTACGGTTACAGATTTGGTCAAGAGGAAGAAACCTACAATATCGTAGCGGCTCATGGT 4091977 Query 20216 TACTTTGGACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTC 20275 || ||||| | |||||||||||||| ||| ||| ||||| | |||| |||||||| Sbjct 4091978 TATTTTGGCTGATTGATCTTCCAATATGCTAGTTTGAACAACTCTCATTCTTTACACTTC 4092037 Query 20276 TT 20277 || Sbjct 4092038 TT 4092039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148826589055158